Rh2DG428600

ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
N/A
Physical Location & Seq
Forward (+)
61991307 .. 61998560
7254 bp
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UTR
Exon/CDS
Intron
Rh2DG428600.1

Sequence Viewer

Length: 180 bp
ATGGCAGCCCGTGCCCACGACGTGGCCGCCCTGAGCATCAAGGGCAACTCGGCCATTCTAAACTTTCCAGAACTGGCCGGGTTGCTGCCCCGTCCGGAGTCACTCAAACCTCCGGACATTCAAGCTGCCGCGGCCAAAGCGGCAGCTATGGATTACGCGGCAAACCTAGTCAGTACGTAG

Protein Analysis

59

Amino Acids

6.01

Weight (kDa)

6.52

Isoelectric Point (pI)

27.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 22
AccII CGCG 2 cut(s) 131, 158
AccIII TCCGGA 2 cut(s) 94, 112
AciI CCGC 5 cut(s) 27, 129, 131, 140, 158
AcoI YGGCCR 4 cut(s) 24, 51, 75, 132
AdeI CACNNNGTG 1 cut(s) 22
AfaI GTAC 1 cut(s) 175
AfiI CCNNNNNNNGG 1 cut(s) 22
AgsI TTSAA 1 cut(s) 122
AjiI CACGTC 1 cut(s) 22
AluBI AGCT 2 cut(s) 125, 146
AluI AGCT 2 cut(s) 125, 146
Aor13HI TCCGGA 2 cut(s) 94, 112
AoxI GGCC 4 cut(s) 24, 51, 75, 132
ApeKI GCWGC 4 cut(s) 5, 85, 125, 143
AsuC2I CCSGG 1 cut(s) 79
BaeGI GKGCMC 1 cut(s) 16
BbvI GCAGC 4 cut(s) 17, 72, 112, 155
BcnI CCSGG 1 cut(s) 79
BfaI CTAG 1 cut(s) 167
BglI GCCNNNNNGGC 1 cut(s) 140
BisI GCNGC 9 cut(s) 6, 27, 86, 126, 129, 132, 141, 144, 159
BlsI GCNGC 9 cut(s) 7, 28, 87, 127, 130, 133, 142, 145, 160
Bme1390I CCNGG 1 cut(s) 79
BmgBI CACGTC 1 cut(s) 22
BmrFI CCNGG 1 cut(s) 79
BmsI GCATC 1 cut(s) 45
Bpu10I CCTNAGC 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 79
BsaAI YACGTR 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 129
BsaWI WCCGGW 2 cut(s) 94, 112
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse1I ACTGG 1 cut(s) 78
BseAI TCCGGA 2 cut(s) 94, 112
BseDI CCNNGG 1 cut(s) 129
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMII CTCAG 1 cut(s) 23
BseNI ACTGG 1 cut(s) 78
BseSI GKGCMC 1 cut(s) 16
BseXI GCAGC 4 cut(s) 17, 72, 112, 155
Bsh1236I CGCG 2 cut(s) 131, 158
BshFI GGCC 4 cut(s) 26, 53, 77, 134
BsiSI CCGG 3 cut(s) 78, 95, 113
BslI CCNNNNNNNGG 1 cut(s) 22
BsnI GGCC 4 cut(s) 26, 53, 77, 134
Bsp1286I GDGCHC 1 cut(s) 16
Bsp13I TCCGGA 2 cut(s) 94, 112
BspACI CCGC 5 cut(s) 27, 129, 131, 140, 158
BspANI GGCC 4 cut(s) 26, 53, 77, 134
BspCNI CTCAG 1 cut(s) 24
BspEI TCCGGA 2 cut(s) 94, 112
BspFNI CGCG 2 cut(s) 131, 158
BsrI ACTGG 1 cut(s) 78
BssECI CCNNGG 1 cut(s) 129
BstAPI GCANNNNNTGC 1 cut(s) 11
BstBAI YACGTR 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 32
BstDSI CCRYGG 1 cut(s) 129
BstFNI CGCG 2 cut(s) 131, 158
BstMWI GCNNNNNNNGC 5 cut(s) 11, 42, 131, 137, 140
BstSCI CCNGG 1 cut(s) 77
BstSLI GKGCMC 1 cut(s) 16
BstSNI TACGTA 1 cut(s) 177
BstUI CGCG 2 cut(s) 131, 158
BstV1I GCAGC 4 cut(s) 17, 72, 112, 155
BsuRI GGCC 4 cut(s) 26, 53, 77, 134
BtgI CCRYGG 1 cut(s) 129
BtrI CACGTC 1 cut(s) 22
Cfr42I CCGCGG 1 cut(s) 132
Csp6I GTAC 1 cut(s) 174
CviJI RGCY 7 cut(s) 8, 26, 53, 77, 125, 134, 146
CviKI_1 RGCY 7 cut(s) 8, 26, 53, 77, 125, 134, 146
CviQI GTAC 1 cut(s) 174
DdeI CTNAG 1 cut(s) 32
DraIII CACNNNGTG 1 cut(s) 22
EaeI YGGCCR 4 cut(s) 24, 51, 75, 132
Eco105I TACGTA 1 cut(s) 177
FaiI YATR 1 cut(s) 149
Fnu4HI GCNGC 9 cut(s) 6, 27, 86, 126, 129, 132, 141, 144, 159
Fsp4HI GCNGC 9 cut(s) 6, 27, 86, 126, 129, 132, 141, 144, 159
FspBI CTAG 1 cut(s) 167
GluI GCNGC 9 cut(s) 6, 27, 86, 126, 129, 132, 141, 144, 159
HaeIII GGCC 4 cut(s) 26, 53, 77, 134
HapII CCGG 3 cut(s) 78, 95, 113
HinfI GANTC 1 cut(s) 98
HpaII CCGG 3 cut(s) 78, 95, 113
Hpy188III TCNNGA 3 cut(s) 68, 95, 113
Hpy99I CGWCG 1 cut(s) 23
HpyCH4IV ACGT 2 cut(s) 21, 176
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 42, 131, 137, 140
HpyF3I CTNAG 1 cut(s) 32
HpySE526I ACGT 2 cut(s) 21, 176
Kpn2I TCCGGA 2 cut(s) 94, 112
KspI CCGCGG 1 cut(s) 132
LpnPI CCDG 6 cut(s) 44, 59, 81, 91, 108, 126
Lsp1109I GCAGC 4 cut(s) 17, 72, 112, 155
LweI GCATC 1 cut(s) 45
MaeI CTAG 1 cut(s) 167
MaeII ACGT 2 cut(s) 21, 176
MaeIII GTNAC 1 cut(s) 99
MhlI GDGCHC 1 cut(s) 16
MlyI GAGTC 1 cut(s) 107
MnlI CCTC 1 cut(s) 120
MroI TCCGGA 2 cut(s) 94, 112
MspA1I CMGCKG 1 cut(s) 131
MspI CCGG 3 cut(s) 78, 95, 113
MspR9I CCNGG 1 cut(s) 79
MvnI CGCG 2 cut(s) 131, 158
MwoI GCNNNNNNNGC 5 cut(s) 11, 42, 131, 137, 140
NciI CCSGG 1 cut(s) 79
NmeAIII GCCGAG 1 cut(s) 29
NmuCI GTSAC 1 cut(s) 99
PflMI CCANNNNNTGG 1 cut(s) 22
PkrI GCNGC 9 cut(s) 7, 28, 87, 127, 130, 133, 142, 145, 160
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
Ppu21I YACGTR 1 cut(s) 177
RsaI GTAC 1 cut(s) 175
RsaNI GTAC 1 cut(s) 174
SacII CCGCGG 1 cut(s) 132
SatI GCNGC 9 cut(s) 6, 27, 86, 126, 129, 132, 141, 144, 159
SchI GAGTC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 79
SduI GDGCHC 1 cut(s) 16
SetI ASST 6 cut(s) 24, 112, 127, 148, 168, 179
SfaNI GCATC 1 cut(s) 45
Sfr303I CCGCGG 1 cut(s) 132
SgrBI CCGCGG 1 cut(s) 132
SnaBI TACGTA 1 cut(s) 177
SsiI CCGC 5 cut(s) 27, 129, 131, 140, 158
SspMI CTAG 1 cut(s) 167
StyD4I CCNGG 1 cut(s) 77
TaiI ACGT 2 cut(s) 24, 179
TauI GCSGC 5 cut(s) 29, 131, 134, 143, 161
TseFI GTSAC 1 cut(s) 99
TseI GCWGC 4 cut(s) 5, 85, 125, 143
Tsp45I GTSAC 1 cut(s) 99
Van91I CCANNNNNTGG 1 cut(s) 22
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.