Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

67727216 .. 67727894

Gene Structure 679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG467700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGTGGAGGAAAAGGCAATGCAAAAATCTCAGGGAGTTGGAGATTAGATCATGCAAAAAATTGAGTGTGCCAAGCGGGTTGAAGCACTTGATCACCCTCAATGAGTTGAAGTTAACTAATATGCCAGAAGAATTTGCTGCAGCCATTGCAAAAGGTAGAGGGCAAATTTGGGAGGGCCTTAACCACTCCCCAGCAATCACTGCAGATAACTGGGAATCTACCGAACCTCGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

78

Amino Acids

8.97

Weight (kDa)

9.62

Isoelectric Point (pI)

50.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	75
AcsI	RAATTY	2 cut(s)	131, 165
AfiI	CCNNNNNNNGG	1 cut(s)	228
AgsI	TTSAA	2 cut(s)	82, 109
AoxI	GGCC	1 cut(s)	175
ApeKI	GCWGC	2 cut(s)	137, 140
ApoI	RAATTY	2 cut(s)	131, 165
AspS9I	GGNCC	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	85
BbvI	GCAGC	2 cut(s)	124, 152
BclI	TGATCA	1 cut(s)	90
BfmI	CTRYAG	2 cut(s)	138, 201
BisI	GCNGC	2 cut(s)	138, 141
BlsI	GCNGC	2 cut(s)	139, 142
BmgT120I	GGNCC	1 cut(s)	175
BmrI	ACTGGG	1 cut(s)	220
BmuI	ACTGGG	1 cut(s)	220
BsaJI	CCNNGG	1 cut(s)	227
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse1I	ACTGG	1 cut(s)	215
Bse3DI	GCAATG	2 cut(s)	23, 144
BseDI	CCNNGG	1 cut(s)	227
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMI	GCAATG	2 cut(s)	23, 144
BseMII	CTCAG	1 cut(s)	43
BseNI	ACTGG	1 cut(s)	215
BseXI	GCAGC	2 cut(s)	124, 152
BseYI	CCCAGC	1 cut(s)	190
BshFI	GGCC	1 cut(s)	177
BslI	CCNNNNNNNGG	1 cut(s)	228
BsnI	GGCC	1 cut(s)	177
Bsp143I	GATC	2 cut(s)	47, 90
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	1 cut(s)	177
BspCNI	CTCAG	1 cut(s)	42
BspMAI	CTGCAG	2 cut(s)	142, 205
BsrDI	GCAATG	2 cut(s)	23, 144
BsrI	ACTGG	1 cut(s)	215
BssECI	CCNNGG	1 cut(s)	227
BssMI	GATC	2 cut(s)	47, 90
BstAPI	GCANNNNNTGC	2 cut(s)	146, 200
BstDEI	CTNAG	1 cut(s)	29
BstKTI	GATC	2 cut(s)	50, 93
BstMBI	GATC	2 cut(s)	47, 90
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 200
BstSFI	CTRYAG	2 cut(s)	138, 201
BstV1I	GCAGC	2 cut(s)	124, 152
BsuRI	GGCC	1 cut(s)	177
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	198
Cfr13I	GGNCC	1 cut(s)	175
CviAII	CATG	1 cut(s)	51
CviJI	RGCY	2 cut(s)	143, 177
CviKI_1	RGCY	2 cut(s)	143, 177
DdeI	CTNAG	1 cut(s)	29
DpnI	GATC	2 cut(s)	49, 92
DpnII	GATC	2 cut(s)	47, 90
EcoO109I	RGGNCCY	1 cut(s)	175
FaeI	CATG	1 cut(s)	54
FaiI	YATR	2 cut(s)	52, 122
FatI	CATG	1 cut(s)	50
FauI	CCCGC	1 cut(s)	68
FbaI	TGATCA	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	138, 141
Fsp4HI	GCNGC	2 cut(s)	138, 141
GluI	GCNGC	2 cut(s)	138, 141
GsaI	CCCAGC	1 cut(s)	194
HaeIII	GGCC	1 cut(s)	177
Hin1II	CATG	1 cut(s)	54
HincII	GTYRAC	1 cut(s)	114
HindII	GTYRAC	1 cut(s)	114
HinfI	GANTC	1 cut(s)	215
HpaI	GTTAAC	1 cut(s)	114
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	1 cut(s)	231
Hpy8I	GTNNAC	1 cut(s)	114
HpyCH4V	TGCA	5 cut(s)	21, 54, 140, 149, 203
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 200
HpyF3I	CTNAG	1 cut(s)	29
Hsp92II	CATG	1 cut(s)	54
Ksp22I	TGATCA	1 cut(s)	90
KspAI	GTTAAC	1 cut(s)	114
Kzo9I	GATC	2 cut(s)	47, 90
LpnPI	CCDG	4 cut(s)	16, 138, 196, 204
Lsp1109I	GCAGC	2 cut(s)	124, 152
MalI	GATC	2 cut(s)	49, 92
MboI	GATC	2 cut(s)	47, 90
MboII	GAAGA	1 cut(s)	140
MluCI	AATT	3 cut(s)	59, 131, 165
MmeI	TCCRAC	1 cut(s)	18
MnlI	CCTC	4 cut(s)	107, 152, 166, 237
MseI	TTAA	2 cut(s)	113, 180
MwoI	GCNNNNNNNGC	2 cut(s)	146, 200
NdeII	GATC	2 cut(s)	47, 90
NlaIII	CATG	1 cut(s)	54
PfeI	GAWTC	1 cut(s)	215
PkrI	GCNGC	2 cut(s)	139, 142
PspFI	CCCAGC	1 cut(s)	190
PspPI	GGNCC	1 cut(s)	175
PstI	CTGCAG	2 cut(s)	142, 205
SaqAI	TTAA	2 cut(s)	113, 180
SatI	GCNGC	2 cut(s)	138, 141
Sau3AI	GATC	2 cut(s)	47, 90
Sau96I	GGNCC	1 cut(s)	175
SetI	ASST	2 cut(s)	157, 229
SfcI	CTRYAG	2 cut(s)	138, 201
SgeI	CNNG	8 cut(s)	43, 63, 84, 88, 100, 137, 203, 223
Sse9I	AATT	3 cut(s)	59, 131, 165
SsiI	CCGC	1 cut(s)	75
TasI	AATT	3 cut(s)	59, 131, 165
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	2 cut(s)	113, 180
Tru9I	TTAA	2 cut(s)	113, 180
TscAI	CASTG	1 cut(s)	205
TseI	GCWGC	2 cut(s)	137, 140
TspRI	CASTG	1 cut(s)	205
XapI	RAATTY	2 cut(s)	131, 165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.