Rh2DG513900

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
N/A
Physical Location & Seq
Reverse (-)
73813859 .. 73814962
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG513900.1

Sequence Viewer

Length: 489 bp
ATGTCTACTTCATCATCAAAAGATGCAGAGAAATGCATTCCCAAGTTGCTGGGTCGTCTCAGCGAAGCCCGAACGGCGGCCAACACCGATGATCCGGCGGTTCTAAATAGCTTCCAGAGGATCCAAGAAGAGCTTGAAATCATGAAAAACATGCTACTGCTACCCAGAGCCAAACAGTGGGAGCAAACTCTGTCAGACCAGTTCAATGCCTTGGAACGCCGCCTCGACAAGTTCATCTTGGGATCCCAGGACGGCGAGTCCATGAGCAGCGTGGCAATCAACCGCGTGCTGGATCCCATTTTCGAAAACGTCGAAAACATCAAACTCGCAATCCCTTTGGTGGAGTCGATGCCTTCATTTCAACACGTTCCTGAGTCATGGACGCGTTCGTCTCAGAGTCATCAAGCAGCTCAGAAAAAGTCACAGCCTCTTGCCCAATTAATTCGAGTTGAAACTATAGTAATTCTCTTCTGCTTTATTCTACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

162

Amino Acids

18.34

Weight (kDa)

5.74

Isoelectric Point (pI)

57.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 388
AccB7I CCANNNNNTGG 1 cut(s) 177
AccI GTMKAC 1 cut(s) 5
AccII CGCG 2 cut(s) 285, 385
AciI CCGC 4 cut(s) 77, 98, 220, 283
AclWI GGATC 7 cut(s) 86, 115, 128, 237, 250, 287, 300
AcoI YGGCCR 1 cut(s) 78
AfiI CCNNNNNNNGG 4 cut(s) 76, 177, 289, 340
AflIII ACRYGT 2 cut(s) 364, 383
AgsI TTSAA 4 cut(s) 137, 205, 362, 452
AhdI GACNNNNNGTC 1 cut(s) 256
AjnI CCWGG 1 cut(s) 246
AluBI AGCT 3 cut(s) 111, 133, 410
AluI AGCT 3 cut(s) 111, 133, 410
Alw26I GTCTC 2 cut(s) 62, 396
AlwI GGATC 7 cut(s) 86, 115, 128, 237, 250, 287, 300
AoxI GGCC 1 cut(s) 78
ApeKI GCWGC 2 cut(s) 267, 407
AseI ATTAAT 1 cut(s) 440
AsuII TTCGAA 1 cut(s) 303
BamHI GGATCC 3 cut(s) 120, 242, 292
BbvI GCAGC 2 cut(s) 279, 419
BceAI ACGGC 2 cut(s) 90, 268
BciT130I CCWGG 1 cut(s) 248
BcoDI GTCTC 2 cut(s) 62, 396
BfmI CTRYAG 1 cut(s) 456
BglI GCCNNNNNGGC 1 cut(s) 74
BisI GCNGC 4 cut(s) 78, 220, 268, 408
BlsI GCNGC 4 cut(s) 79, 221, 269, 409
Bme1390I CCNGG 1 cut(s) 248
BmeRI GACNNNNNGTC 1 cut(s) 256
BmiI GGNNCC 3 cut(s) 122, 244, 294
BmrFI CCNGG 1 cut(s) 248
BmsI GCATC 2 cut(s) 13, 339
Bpu14I TTCGAA 1 cut(s) 303
BsaJI CCNNGG 2 cut(s) 210, 246
Bsc4I CCNNNNNNNGG 4 cut(s) 76, 177, 289, 340
Bse1I ACTGG 1 cut(s) 199
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 2 cut(s) 210, 246
BseLI CCNNNNNNNGG 4 cut(s) 76, 177, 289, 340
BseMII CTCAG 4 cut(s) 73, 363, 407, 425
BseNI ACTGG 1 cut(s) 199
BseXI GCAGC 2 cut(s) 279, 419
BseYI CCCAGC 1 cut(s) 49
Bsh1236I CGCG 2 cut(s) 285, 385
BshFI GGCC 1 cut(s) 80
BsiSI CCGG 1 cut(s) 95
BslI CCNNNNNNNGG 4 cut(s) 76, 177, 289, 340
BsmAI GTCTC 2 cut(s) 62, 396
BsmBI CGTCTC 2 cut(s) 62, 396
BsmI GAATGC 1 cut(s) 36
BsnI GGCC 1 cut(s) 80
Bsp119I TTCGAA 1 cut(s) 303
Bsp143I GATC 4 cut(s) 91, 120, 242, 292
BspACI CCGC 4 cut(s) 77, 98, 220, 283
BspANI GGCC 1 cut(s) 80
BspCNI CTCAG 4 cut(s) 72, 364, 406, 424
BspFNI CGCG 2 cut(s) 285, 385
BspHI TCATGA 1 cut(s) 141
BspLI GGNNCC 3 cut(s) 122, 244, 294
BspPI GGATC 7 cut(s) 86, 115, 128, 237, 250, 287, 300
BspQI GCTCTTC 1 cut(s) 123
BspT104I TTCGAA 1 cut(s) 303
BsrI ACTGG 1 cut(s) 199
BssECI CCNNGG 2 cut(s) 210, 246
BssMI GATC 4 cut(s) 91, 120, 242, 292
BssT1I CCWWGG 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 1 cut(s) 177
Bst6I CTCTTC 2 cut(s) 123, 473
BstBI TTCGAA 1 cut(s) 303
BstC8I GCNNGC 1 cut(s) 287
BstDEI CTNAG 4 cut(s) 59, 372, 393, 411
BstFNI CGCG 2 cut(s) 285, 385
BstKTI GATC 4 cut(s) 94, 123, 245, 295
BstMAI GTCTC 2 cut(s) 62, 396
BstMBI GATC 4 cut(s) 91, 120, 242, 292
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstNI CCWGG 1 cut(s) 248
BstNSI RCATGY 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 246
BstSFI CTRYAG 1 cut(s) 456
BstUI CGCG 2 cut(s) 285, 385
BstV1I GCAGC 2 cut(s) 279, 419
BstX2I RGATCY 3 cut(s) 120, 242, 292
BstXI CCANNNNNNTGG 1 cut(s) 49
BstYI RGATCY 3 cut(s) 120, 242, 292
BsuRI GGCC 1 cut(s) 80
BtsIMutI CAGTG 1 cut(s) 182
Cac8I GCNNGC 1 cut(s) 287
CciI TCATGA 1 cut(s) 141
CseI GACGC 1 cut(s) 391
CviAII CATG 4 cut(s) 142, 151, 262, 378
CviJI RGCY 7 cut(s) 68, 80, 111, 133, 170, 410, 427
CviKI_1 RGCY 7 cut(s) 68, 80, 111, 133, 170, 410, 427
DdeI CTNAG 4 cut(s) 59, 372, 393, 411
DpnI GATC 4 cut(s) 93, 122, 244, 294
DpnII GATC 4 cut(s) 91, 120, 242, 292
DrdI GACNNNNNNGTC 1 cut(s) 388
DriI GACNNNNNGTC 1 cut(s) 256
DseDI GACNNNNNNGTC 1 cut(s) 388
EaeI YGGCCR 1 cut(s) 78
Eam1104I CTCTTC 2 cut(s) 123, 473
Eam1105I GACNNNNNGTC 1 cut(s) 256
EarI CTCTTC 2 cut(s) 123, 473
Eco130I CCWWGG 1 cut(s) 210
EcoRII CCWGG 1 cut(s) 246
EcoT14I CCWWGG 1 cut(s) 210
EcoT22I ATGCAT 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 210
Esp3I CGTCTC 2 cut(s) 62, 396
FaeI CATG 4 cut(s) 145, 154, 265, 381
FaiI YATR 5 cut(s) 143, 152, 263, 379, 458
FalI AAGNNNNNCTT 4 cut(s) 117, 149, 221, 253
FatI CATG 4 cut(s) 141, 150, 261, 377
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 4 cut(s) 78, 220, 268, 408
Fsp4HI GCNGC 4 cut(s) 78, 220, 268, 408
GluI GCNGC 4 cut(s) 78, 220, 268, 408
GsaI CCCAGC 1 cut(s) 53
HaeIII GGCC 1 cut(s) 80
HapII CCGG 1 cut(s) 95
HgaI GACGC 1 cut(s) 391
Hin1II CATG 4 cut(s) 145, 154, 265, 381
HinfI GANTC 4 cut(s) 257, 344, 374, 397
HpaII CCGG 1 cut(s) 95
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 3 cut(s) 196, 396, 414
Hpy188III TCNNGA 3 cut(s) 115, 142, 371
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 1 cut(s) 363
HpyCH4III ACNGT 1 cut(s) 177
HpyCH4IV ACGT 2 cut(s) 309, 366
HpyCH4V TGCA 2 cut(s) 26, 36
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpyF3I CTNAG 4 cut(s) 59, 372, 393, 411
HpySE526I ACGT 2 cut(s) 309, 366
Hsp92II CATG 4 cut(s) 145, 154, 265, 381
Kzo9I GATC 4 cut(s) 91, 120, 242, 292
LguI GCTCTTC 1 cut(s) 123
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 9 cut(s) 35, 108, 128, 178, 212, 233, 260, 275, 384
Lsp1109I GCAGC 2 cut(s) 279, 419
LweI GCATC 2 cut(s) 13, 339
MaeII ACGT 2 cut(s) 309, 366
MaeIII GTNAC 1 cut(s) 420
MalI GATC 4 cut(s) 93, 122, 244, 294
MboI GATC 4 cut(s) 91, 120, 242, 292
MboII GAAGA 2 cut(s) 140, 460
MflI RGATCY 3 cut(s) 120, 242, 292
MluCI AATT 3 cut(s) 437, 441, 462
MluI ACGCGT 1 cut(s) 383
MlyI GAGTC 4 cut(s) 266, 353, 383, 406
MnlI CCTC 3 cut(s) 111, 233, 438
Mph1103I ATGCAT 1 cut(s) 38
MseI TTAA 1 cut(s) 440
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 248
Mva1269I GAATGC 1 cut(s) 36
MvaI CCWGG 1 cut(s) 248
MvnI CGCG 2 cut(s) 285, 385
MwoI GCNNNNNNNGC 1 cut(s) 74
NdeII GATC 4 cut(s) 91, 120, 242, 292
NlaIII CATG 4 cut(s) 145, 154, 265, 381
NlaIV GGNNCC 3 cut(s) 122, 244, 294
NmuCI GTSAC 1 cut(s) 420
NsiI ATGCAT 1 cut(s) 38
NspI RCATGY 1 cut(s) 154
NspV TTCGAA 1 cut(s) 303
PagI TCATGA 1 cut(s) 141
PciSI GCTCTTC 1 cut(s) 123
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PctI GAATGC 1 cut(s) 36
PflMI CCANNNNNTGG 1 cut(s) 177
PkrI GCNGC 4 cut(s) 79, 221, 269, 409
PleI GAGTC 4 cut(s) 265, 352, 382, 405
PpsI GAGTC 4 cut(s) 265, 352, 382, 405
PshBI ATTAAT 1 cut(s) 440
Psp6I CCWGG 1 cut(s) 246
PspFI CCCAGC 1 cut(s) 49
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 3 cut(s) 122, 244, 294
PsuI RGATCY 3 cut(s) 120, 242, 292
SapI GCTCTTC 1 cut(s) 123
SaqAI TTAA 1 cut(s) 440
SatI GCNGC 4 cut(s) 78, 220, 268, 408
Sau3AI GATC 4 cut(s) 91, 120, 242, 292
SchI GAGTC 4 cut(s) 266, 353, 383, 406
ScrFI CCNGG 1 cut(s) 248
SetI ASST 5 cut(s) 113, 135, 312, 369, 412
SfaNI GCATC 2 cut(s) 13, 339
SfcI CTRYAG 1 cut(s) 456
SfuI TTCGAA 1 cut(s) 303
Sse9I AATT 3 cut(s) 437, 441, 462
SsiI CCGC 4 cut(s) 77, 98, 220, 283
StyD4I CCNGG 1 cut(s) 246
StyI CCWWGG 1 cut(s) 210
TaaI ACNGT 1 cut(s) 177
TaiI ACGT 2 cut(s) 312, 369
TaqI TCGA 5 cut(s) 225, 303, 312, 347, 445
TasI AATT 3 cut(s) 437, 441, 462
TauI GCSGC 2 cut(s) 80, 222
Tru1I TTAA 1 cut(s) 440
Tru9I TTAA 1 cut(s) 440
TscAI CASTG 1 cut(s) 182
TseFI GTSAC 1 cut(s) 420
TseI GCWGC 2 cut(s) 267, 407
Tsp45I GTSAC 1 cut(s) 420
TspDTI ATGAA 3 cut(s) 158, 223, 345
TspRI CASTG 1 cut(s) 182
Van91I CCANNNNNTGG 1 cut(s) 177
VspI ATTAAT 1 cut(s) 440
XceI RCATGY 1 cut(s) 154
XcmI CCANNNNNNNNNTGG 1 cut(s) 268
XmiI GTMKAC 1 cut(s) 5
Zsp2I ATGCAT 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.