Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

90575603 .. 90580478

Gene Structure 4876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG688200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCGGAGGAGACGAAGACCACCGTTGACTACCGGATGGAGAGAGCGTCTGGTCCCCACTTCTCGGGCCTCCGACTCGACGGCCTCTTATCTTCTTCGCCTAATTCTTCTCCTTCTTCAGCTTCGCCTCTTTCTCTTCGCTCTTCTGCCGCCGATTCTTCAAACCTCGCCGACTCCAACGCCGCCAAGCAGCCCTTCGTCATCGGTGTTTCTGGAGGTACGGCTTCCGGTAAGACCACGGTGTGCGACATGATCATCCAGCAGCTTCACGATCATCGCGTCGTCCTTGTCAATCAGGATTCATTTTATCGTGGTTTGACGCCTGAGGAGTCTGAACGGGTGCATGAGTATAATTTTGATCATCCTGACGCGTTTGACACTGAGCAGATGTTAGAGTGTGTTCAAAAGCTAAAAAGCGGGCAGTCTGTCCAAGTTCCAATATATGATTTTAAGATACATCGGCGCAGTTCTGATAGTTTTCGACAGGTGAATGCTTCTGATGTAATAATCTTGGAGGGAATTCTGGTTTTCCATGACCAGCGTGTCCGTAATCTGATGAACATGAAGATTTTTGTCGATACAGATGCTGATGTGAGACTTGCTCGTAGATTAAGACGAGACACTGTTGAGAGGGGCAGGGATGTAGACTCTGTTCTTGAGCAGTATGCCAAGTTTGTCAAGCCTGCTTTTGATGATTTTGTTCTCCCCTCAAAGAAGTACGCTGATGTGATCATTCCCCGGGGAGGCGATAACCATGTTGCTATTGACTTAATTGTACAACATATTCGCACAAAGCTTGGTCAGCATGACCTTTGCGAAATATATCCTAATGTGTACGTTATACAGTCCACGTTTCAGGTATGCCTTCTGTTTTATGTTATTTGGTGTTGTAAGCATATTCTTCACCTTTTGTTTTTTGGGGGAGTCAAAACTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001704 GO:0001706 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006810 GO:0006833 GO:0006950 GO:0007275 GO:0007369 GO:0007389 GO:0007492 GO:0008104 GO:0008150 GO:0009505 GO:0009531 GO:0009611 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0009987 GO:0010154 GO:0010453 GO:0010470 GO:0016020 GO:0022414 GO:0022603 GO:0030104 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0033036 GO:0035987 GO:0042044 GO:0042592 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045184 GO:0045595 GO:0045995 GO:0048226 GO:0048316 GO:0048598 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0061458 GO:0065001 GO:0065007 GO:0065008 GO:0071944 GO:0090558 GO:0090708 GO:0098771 GO:0099402 GO:1903224 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

312

Amino Acids

35.19

Weight (kDa)

6.3

Isoelectric Point (pI)

51.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRK	PF00485	67 - 253	2.5e-51	Phosphoribulokinase / Uridine kinase family
CoaE	PF01121	67 - 235	4.6e-06	Dephospho-CoA kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	542
AccI	GTMKAC	1 cut(s)	645
AccII	CGCG	2 cut(s)	279, 371
AciI	CCGC	4 cut(s)	5, 150, 183, 417
AcsI	RAATTY	1 cut(s)	519
AcuI	CTGAAG	1 cut(s)	102
AcyI	GRCGYC	1 cut(s)	320
AdeI	CACNNNGTG	1 cut(s)	243
AfaI	GTAC	4 cut(s)	220, 719, 777, 836
AfiI	CCNNNNNNNGG	2 cut(s)	64, 743
AflIII	ACRYGT	1 cut(s)	369
AgsI	TTSAA	2 cut(s)	162, 404
AjuI	GAANNNNNNNTTGG	2 cut(s)	179, 211
AluBI	AGCT	4 cut(s)	122, 265, 409, 796
AluI	AGCT	4 cut(s)	122, 265, 409, 796
Alw26I	GTCTC	3 cut(s)	5, 589, 612
AlwNI	CAGNNNCTG	1 cut(s)	587
Ama87I	CYCGRG	2 cut(s)	64, 738
AoxI	GGCC	2 cut(s)	67, 82
ApeKI	GCWGC	2 cut(s)	190, 262
ApoI	RAATTY	1 cut(s)	519
AspLEI	GCGC	1 cut(s)	465
AspS9I	GGNCC	2 cut(s)	53, 67
AsuC2I	CCSGG	2 cut(s)	739, 740
AsuHPI	GGTGA	2 cut(s)	499, 896
AvaI	CYCGRG	2 cut(s)	64, 738
AvaII	GGWCC	1 cut(s)	53
AxyI	CCTNAGG	1 cut(s)	324
BbsI	GAAGAC	1 cut(s)	23
BbvI	GCAGC	2 cut(s)	202, 274
BccI	CCATC	1 cut(s)	31
BceAI	ACGGC	2 cut(s)	97, 237
BcgI	CGANNNNNNTGC	2 cut(s)	566, 600
BclI	TGATCA	3 cut(s)	252, 358, 729
BcnI	CCSGG	2 cut(s)	739, 740
BcoDI	GTCTC	3 cut(s)	5, 589, 612
BisI	GCNGC	4 cut(s)	150, 183, 191, 263
BlsI	GCNGC	4 cut(s)	151, 184, 192, 264
Bme1390I	CCNGG	2 cut(s)	739, 740
Bme18I	GGWCC	1 cut(s)	53
BmeT110I	CYCGRG	2 cut(s)	64, 738
BmgT120I	GGNCC	2 cut(s)	53, 67
BmiI	GGNNCC	1 cut(s)	55
BmrFI	CCNGG	2 cut(s)	739, 740
BmsI	GCATC	1 cut(s)	574
BpiI	GAAGAC	1 cut(s)	23
BplI	GAGNNNNNCTC	2 cut(s)	586, 618
BpmI	CTGGAG	1 cut(s)	234
BpuEI	CTTGAG	1 cut(s)	677
BpuMI	CCSGG	2 cut(s)	739, 740
BsaHI	GRCGYC	1 cut(s)	320
BsaJI	CCNNGG	4 cut(s)	237, 737, 738, 739
BsaWI	WCCGGW	2 cut(s)	33, 227
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 743
Bse21I	CCTNAGG	1 cut(s)	324
BseDI	CCNNGG	4 cut(s)	237, 737, 738, 739
BseGI	GGATG	4 cut(s)	42, 255, 361, 646
BseLI	CCNNNNNNNGG	2 cut(s)	64, 743
BseMII	CTCAG	2 cut(s)	315, 372
BseRI	GAGGAG	2 cut(s)	23, 341
BseXI	GCAGC	2 cut(s)	202, 274
Bsh1236I	CGCG	2 cut(s)	279, 371
BshFI	GGCC	2 cut(s)	69, 84
BsiHKCI	CYCGRG	2 cut(s)	64, 738
BsiSI	CCGG	3 cut(s)	34, 228, 739
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	2 cut(s)	64, 743
BsmAI	GTCTC	3 cut(s)	5, 589, 612
BsmBI	CGTCTC	1 cut(s)	5
BsmFI	GGGAC	1 cut(s)	39
BsmI	GAATGC	1 cut(s)	496
BsnI	GGCC	2 cut(s)	69, 84
BsoBI	CYCGRG	2 cut(s)	64, 738
Bsp1407I	TGTACA	1 cut(s)	775
Bsp143I	GATC	4 cut(s)	252, 271, 358, 729
BspACI	CCGC	4 cut(s)	5, 150, 183, 417
BspANI	GGCC	2 cut(s)	69, 84
BspCNI	CTCAG	2 cut(s)	316, 373
BspFNI	CGCG	2 cut(s)	279, 371
BspLI	GGNNCC	1 cut(s)	55
BspQI	GCTCTTC	1 cut(s)	148
BsrGI	TGTACA	1 cut(s)	775
BssECI	CCNNGG	4 cut(s)	237, 737, 738, 739
BssMI	GATC	4 cut(s)	252, 271, 358, 729
BssNI	GRCGYC	1 cut(s)	320
Bst4CI	ACNGT	4 cut(s)	25, 241, 625, 846
Bst6I	CTCTTC	2 cut(s)	141, 148
BstACI	GRCGYC	1 cut(s)	320
BstAUI	TGTACA	1 cut(s)	775
BstC8I	GCNNGC	2 cut(s)	419, 684
BstDEI	CTNAG	2 cut(s)	324, 381
BstDSI	CCRYGG	1 cut(s)	237
BstF5I	GGATG	4 cut(s)	42, 255, 361, 646
BstFNI	CGCG	2 cut(s)	279, 371
BstHHI	GCGC	1 cut(s)	465
BstKTI	GATC	4 cut(s)	255, 274, 361, 732
BstMAI	GTCTC	3 cut(s)	5, 589, 612
BstMBI	GATC	4 cut(s)	252, 271, 358, 729
BstMWI	GCNNNNNNNGC	1 cut(s)	802
BstSCI	CCNGG	2 cut(s)	737, 738
BstUI	CGCG	2 cut(s)	279, 371
BstV1I	GCAGC	2 cut(s)	202, 274
BstV2I	GAAGAC	1 cut(s)	23
Bsu36I	CCTNAGG	1 cut(s)	324
BsuRI	GGCC	2 cut(s)	69, 84
BtgI	CCRYGG	1 cut(s)	237
BtgZI	GCGATG	1 cut(s)	260
BtsCI	GGATG	4 cut(s)	42, 255, 361, 646
BtsIMutI	CAGTG	2 cut(s)	378, 621
Cac8I	GCNNGC	2 cut(s)	419, 684
CaiI	CAGNNNCTG	1 cut(s)	587
CfoI	GCGC	1 cut(s)	465
Cfr13I	GGNCC	2 cut(s)	53, 67
Cfr9I	CCCGGG	1 cut(s)	738
CseI	GACGC	4 cut(s)	36, 268, 328, 377
Csp6I	GTAC	4 cut(s)	219, 718, 776, 835
CviAII	CATG	6 cut(s)	250, 344, 533, 562, 755, 806
CviJI	RGCY	9 cut(s)	69, 84, 122, 193, 224, 265, 409, 682, 796
CviKI_1	RGCY	9 cut(s)	69, 84, 122, 193, 224, 265, 409, 682, 796
CviQI	GTAC	4 cut(s)	219, 718, 776, 835
DdeI	CTNAG	2 cut(s)	324, 381
DpnI	GATC	4 cut(s)	254, 273, 360, 731
DpnII	GATC	4 cut(s)	252, 271, 358, 729
DraIII	CACNNNGTG	1 cut(s)	243
DrdI	GACNNNNNNGTC	1 cut(s)	542
DseDI	GACNNNNNNGTC	1 cut(s)	542
Eam1104I	CTCTTC	2 cut(s)	141, 148
EarI	CTCTTC	2 cut(s)	141, 148
EciI	GGCGGA	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	102
Eco81I	CCTNAGG	1 cut(s)	324
Eco88I	CYCGRG	2 cut(s)	64, 738
EcoRI	GAATTC	1 cut(s)	519
Esp3I	CGTCTC	1 cut(s)	5
FaeI	CATG	6 cut(s)	253, 347, 536, 565, 758, 809
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	6 cut(s)	249, 343, 532, 561, 754, 805
FauI	CCCGC	1 cut(s)	410
FbaI	TGATCA	3 cut(s)	252, 358, 729
FblI	GTMKAC	1 cut(s)	645
Fnu4HI	GCNGC	4 cut(s)	150, 183, 191, 263
FokI	GGATG	4 cut(s)	49, 242, 348, 653
Fsp4HI	GCNGC	4 cut(s)	150, 183, 191, 263
GlaI	GCGC	1 cut(s)	464
GluI	GCNGC	4 cut(s)	150, 183, 191, 263
GsuI	CTGGAG	1 cut(s)	234
HaeIII	GGCC	2 cut(s)	69, 84
HapII	CCGG	3 cut(s)	34, 228, 739
HgaI	GACGC	4 cut(s)	36, 268, 328, 377
HhaI	GCGC	1 cut(s)	465
Hin1I	GRCGYC	1 cut(s)	320
Hin1II	CATG	6 cut(s)	253, 347, 536, 565, 758, 809
Hin6I	GCGC	1 cut(s)	463
HinP1I	GCGC	1 cut(s)	463
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HindIII	AAGCTT	1 cut(s)	794
HinfI	GANTC	7 cut(s)	75, 155, 173, 299, 329, 647, 924
HpaII	CCGG	3 cut(s)	34, 228, 739
HphI	GGTGA	2 cut(s)	499, 896
Hpy166II	GTNNAC	4 cut(s)	28, 646, 835, 849
Hpy188I	TCNGA	5 cut(s)	74, 334, 472, 499, 555
Hpy188III	TCNNGA	5 cut(s)	213, 269, 296, 365, 656
Hpy8I	GTNNAC	4 cut(s)	28, 646, 835, 849
Hpy99I	CGWCG	2 cut(s)	83, 284
HpyAV	CCTTC	3 cut(s)	123, 205, 875
HpyCH4III	ACNGT	4 cut(s)	25, 241, 625, 846
HpyCH4IV	ACGT	2 cut(s)	837, 851
HpyCH4V	TGCA	1 cut(s)	343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	802
HpyF3I	CTNAG	2 cut(s)	324, 381
HpySE526I	ACGT	2 cut(s)	837, 851
Hsp92I	GRCGYC	1 cut(s)	320
Hsp92II	CATG	6 cut(s)	253, 347, 536, 565, 758, 809
HspAI	GCGC	1 cut(s)	463
Ksp22I	TGATCA	3 cut(s)	252, 358, 729
Kzo9I	GATC	4 cut(s)	252, 271, 358, 729
LguI	GCTCTTC	1 cut(s)	148
Lsp1109I	GCAGC	2 cut(s)	202, 274
LweI	GCATC	1 cut(s)	574
MaeII	ACGT	2 cut(s)	837, 851
MalI	GATC	4 cut(s)	254, 273, 360, 731
MboI	GATC	4 cut(s)	252, 271, 358, 729
MluCI	AATT	4 cut(s)	103, 352, 519, 771
MluI	ACGCGT	1 cut(s)	369
MlyI	GAGTC	5 cut(s)	69, 167, 338, 641, 933
MmeI	TCCRAC	2 cut(s)	97, 201
MseI	TTAA	3 cut(s)	450, 611, 770
MspI	CCGG	3 cut(s)	34, 228, 739
MspR9I	CCNGG	2 cut(s)	739, 740
Mva1269I	GAATGC	1 cut(s)	496
MvnI	CGCG	2 cut(s)	279, 371
MwoI	GCNNNNNNNGC	1 cut(s)	802
NciI	CCSGG	2 cut(s)	739, 740
NdeII	GATC	4 cut(s)	252, 271, 358, 729
NlaIII	CATG	6 cut(s)	253, 347, 536, 565, 758, 809
NlaIV	GGNNCC	1 cut(s)	55
PciSI	GCTCTTC	1 cut(s)	148
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PctI	GAATGC	1 cut(s)	496
PfeI	GAWTC	2 cut(s)	155, 299
PkrI	GCNGC	4 cut(s)	151, 184, 192, 264
PleI	GAGTC	5 cut(s)	69, 167, 337, 641, 932
PpsI	GAGTC	5 cut(s)	69, 167, 337, 641, 932
PspN4I	GGNNCC	1 cut(s)	55
PspPI	GGNCC	2 cut(s)	53, 67
PsrI	GAACNNNNNNTAC	2 cut(s)	636, 668
PstNI	CAGNNNCTG	1 cut(s)	587
RsaI	GTAC	4 cut(s)	220, 719, 777, 836
RsaNI	GTAC	4 cut(s)	219, 718, 776, 835
SapI	GCTCTTC	1 cut(s)	148
SaqAI	TTAA	3 cut(s)	450, 611, 770
SatI	GCNGC	4 cut(s)	150, 183, 191, 263
Sau3AI	GATC	4 cut(s)	252, 271, 358, 729
Sau96I	GGNCC	2 cut(s)	53, 67
SchI	GAGTC	5 cut(s)	69, 167, 338, 641, 933
ScrFI	CCNGG	2 cut(s)	739, 740
SfaNI	GCATC	1 cut(s)	574
SinI	GGWCC	1 cut(s)	53
SmaI	CCCGGG	1 cut(s)	740
SmlI	CTYRAG	1 cut(s)	656
SmoI	CTYRAG	1 cut(s)	656
Sse9I	AATT	4 cut(s)	103, 352, 519, 771
SsiI	CCGC	4 cut(s)	5, 150, 183, 417
StyD4I	CCNGG	2 cut(s)	737, 738
TaaI	ACNGT	4 cut(s)	25, 241, 625, 846
TaiI	ACGT	2 cut(s)	840, 854
TaqI	TCGA	3 cut(s)	78, 481, 576
TasI	AATT	4 cut(s)	103, 352, 519, 771
TatI	WGTACW	1 cut(s)	775
TauI	GCSGC	2 cut(s)	152, 185
TfiI	GAWTC	2 cut(s)	155, 299
Tru1I	TTAA	3 cut(s)	450, 611, 770
Tru9I	TTAA	3 cut(s)	450, 611, 770
TscAI	CASTG	2 cut(s)	385, 628
TseI	GCWGC	2 cut(s)	190, 262
TspDTI	ATGAA	3 cut(s)	291, 572, 578
TspGWI	ACGGA	1 cut(s)	536
TspMI	CCCGGG	1 cut(s)	738
TspRI	CASTG	2 cut(s)	385, 628
VpaK11BI	GGWCC	1 cut(s)	53
XapI	RAATTY	1 cut(s)	519
XmaI	CCCGGG	1 cut(s)	738
XmiI	GTMKAC	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.