Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

11129362 .. 11133041

Gene Structure 3680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG128900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGTTTTCAGCTCTGACTGAGTCTTTGGTGAAATGTCCAATTGCTTTTTCTGTAGGATACAATGGTTCAAGCAGCAAGGCCTCATCGAGCTCCATGCCTATAACTCCTCGGAGTGAGGGGGAGATTTTGCAATCCTGCAATTTGAGCAGTATCAGCTTCAGTGAGCTCAAAAATGCTACAAGAAACTTCCGTCCCGATAGTGTACTAGGTGATGGCGGTTTTGGTTCCGTTTTCAAAGGTTGGATCGATGAAAGTACACTTATAGCTACCAAGGCTGGGTCTGGCATGGTAATTGCTGTGAAGAGACTCAACCAAGATGGTTTCCAGGGCCACAAGGAATGGTTGACAGAAATCAACTATCTTGGACAGCTACAGCATCCTAATCTTGTGAAATTGATTGGTTATTGCTTAGAGGATGAGCACCGGCTCCTGGTTTATGAGTTCATGCCTAAGGGCAGCATGGAAAATCATCTATTCAGGAGAAGTACTCACTTTCAGCCTCTTTCTTGGACCCTGCGAATGAAAATTGCCCTTGGTGCTGCAAAGGGACTTGCCTTTCTGCACAATGCTGAACAACAAGTCATACATCGTGACTTCAAGTCTGCCAACATTTTGCTTGACTCGAACTACAATGCGAAGCTGGCTGATTTTGGGCTGGCGAGGGATGGACCAACTGGCGACAAAAGCCATGTCTCTACTAGGGTCATAGGAACCCAAGGATATGCTGCTCCTGAGTATCTAGCCACAGGTACTACTTTAAAACTTCATTTTTTATTTTTATCTTGGCTTTTAGAAACAAGCCATTCTCTCTTTATCTTTCGGATGATATTTCAGTTCGAGAAGGTGTACTACTGTAGTCTTACAGAGCTAATGATTAGTTTGTTCCAAGTAATGGAAAGTTTTACCTCATTCTGTTTAAGAAATTTGAAGGACAGCAGTCCTTTAAATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

317

Amino Acids

35.41

Weight (kDa)

8.21

Isoelectric Point (pI)

39.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	66 - 248	8.2e-35	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	67 - 250	1.6e-35	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	892
AciI	CCGC	1 cut(s)	216
AclWI	GGATC	1 cut(s)	251
AcsI	RAATTY	2 cut(s)	922, 946
AcuI	CTGAAG	1 cut(s)	142
AfaI	GTAC	5 cut(s)	204, 256, 487, 751, 848
AfiI	CCNNNNNNNGG	3 cut(s)	276, 430, 892
AgsI	TTSAA	4 cut(s)	69, 235, 598, 928
AhdI	GACNNNNNGTC	1 cut(s)	598
AjnI	CCWGG	2 cut(s)	324, 429
AjuI	GAANNNNNNNTTGG	2 cut(s)	31, 63
AluBI	AGCT	8 cut(s)	11, 90, 156, 166, 266, 370, 640, 868
AluI	AGCT	8 cut(s)	11, 90, 156, 166, 266, 370, 640, 868
Alw21I	GWGCWC	3 cut(s)	92, 168, 423
Alw26I	GTCTC	2 cut(s)	298, 697
AlwI	GGATC	1 cut(s)	251
AoxI	GGCC	2 cut(s)	78, 328
ApeKI	GCWGC	4 cut(s)	72, 456, 539, 725
ApoI	RAATTY	2 cut(s)	922, 946
ArsI	GACNNNNNNTTYG	4 cut(s)	7, 39, 675, 707
AspS9I	GGNCC	3 cut(s)	328, 510, 668
AsuHPI	GGTGA	2 cut(s)	40, 221
AvaII	GGWCC	2 cut(s)	510, 668
AxyI	CCTNAGG	1 cut(s)	450
BaeI	ACNNNNGTAYC	2 cut(s)	49, 82
BanII	GRGCYC	2 cut(s)	92, 168
BarI	GAAGNNNNNNTAC	2 cut(s)	833, 865
Bbv12I	GWGCWC	3 cut(s)	92, 168, 423
BbvI	GCAGC	4 cut(s)	84, 468, 526, 712
BccI	CCATC	3 cut(s)	206, 311, 659
BcgI	CGANNNNNNTGC	2 cut(s)	76, 110
BciT130I	CCWGG	2 cut(s)	326, 431
BciVI	GTATCC	1 cut(s)	50
BcoDI	GTCTC	2 cut(s)	298, 697
BfaI	CTAG	3 cut(s)	206, 699, 740
BfmI	CTRYAG	3 cut(s)	51, 371, 853
BfuI	GTATCC	1 cut(s)	50
BisI	GCNGC	4 cut(s)	73, 457, 540, 726
BlsI	GCNGC	4 cut(s)	74, 458, 541, 727
BmcAI	AGTACT	1 cut(s)	487
Bme1390I	CCNGG	2 cut(s)	326, 431
Bme18I	GGWCC	2 cut(s)	510, 668
BmeRI	GACNNNNNGTC	1 cut(s)	598
BmgT120I	GGNCC	3 cut(s)	328, 510, 668
BmiI	GGNNCC	4 cut(s)	226, 428, 512, 712
BmrFI	CCNGG	2 cut(s)	326, 431
BmsI	GCATC	1 cut(s)	385
BoxI	GACNNNNGTC	1 cut(s)	936
BplI	GAGNNNNNCTC	2 cut(s)	472, 504
Bsa29I	ATCGAT	1 cut(s)	246
BsaJI	CCNNGG	5 cut(s)	107, 270, 325, 532, 715
Bsc4I	CCNNNNNNNGG	3 cut(s)	276, 430, 892
Bse118I	RCCGGY	1 cut(s)	423
Bse1I	ACTGG	1 cut(s)	679
Bse21I	CCTNAGG	1 cut(s)	450
BseBI	CCWGG	2 cut(s)	326, 431
BseCI	ATCGAT	1 cut(s)	246
BseDI	CCNNGG	5 cut(s)	107, 270, 325, 532, 715
BseGI	GGATG	4 cut(s)	376, 421, 670, 828
BseLI	CCNNNNNNNGG	3 cut(s)	276, 430, 892
BseMII	CTCAG	2 cut(s)	9, 723
BseNI	ACTGG	1 cut(s)	679
BseRI	GAGGAG	1 cut(s)	96
BseXI	GCAGC	4 cut(s)	84, 468, 526, 712
BseYI	CCCAGC	1 cut(s)	275
BsgI	GTGCAG	1 cut(s)	545
BshFI	GGCC	2 cut(s)	80, 330
BshVI	ATCGAT	1 cut(s)	246
BsiHKAI	GWGCWC	3 cut(s)	92, 168, 423
BsiSI	CCGG	1 cut(s)	424
BslFI	GGGAC	2 cut(s)	177, 561
BslI	CCNNNNNNNGG	3 cut(s)	276, 430, 892
BsmAI	GTCTC	2 cut(s)	298, 697
BsmFI	GGGAC	2 cut(s)	177, 561
BsnI	GGCC	2 cut(s)	80, 330
Bsp1286I	GDGCHC	3 cut(s)	92, 168, 423
Bsp143I	GATC	1 cut(s)	243
BspACI	CCGC	1 cut(s)	216
BspANI	GGCC	2 cut(s)	80, 330
BspCNI	CTCAG	2 cut(s)	10, 724
BspDI	ATCGAT	1 cut(s)	246
BspHI	TCATGA	1 cut(s)	950
BspLI	GGNNCC	4 cut(s)	226, 428, 512, 712
BspPI	GGATC	1 cut(s)	251
BsrFI	RCCGGY	1 cut(s)	423
BsrI	ACTGG	1 cut(s)	679
BssAI	RCCGGY	1 cut(s)	423
BssECI	CCNNGG	5 cut(s)	107, 270, 325, 532, 715
BssMI	GATC	1 cut(s)	243
BssT1I	CCWWGG	3 cut(s)	270, 532, 715
Bst2UI	CCWGG	2 cut(s)	326, 431
Bst4CI	ACNGT	1 cut(s)	854
Bst6I	CTCTTC	1 cut(s)	296
BstC8I	GCNNGC	2 cut(s)	642, 657
BstDEI	CTNAG	4 cut(s)	18, 409, 450, 732
BstF5I	GGATG	4 cut(s)	376, 421, 670, 828
BstKTI	GATC	1 cut(s)	246
BstMAI	GTCTC	2 cut(s)	298, 697
BstMBI	GATC	1 cut(s)	243
BstMWI	GCNNNNNNNGC	6 cut(s)	144, 153, 272, 536, 641, 684
BstNI	CCWGG	2 cut(s)	326, 431
BstPAI	GACNNNNGTC	1 cut(s)	936
BstSCI	CCNGG	2 cut(s)	324, 429
BstSFI	CTRYAG	3 cut(s)	51, 371, 853
BstV1I	GCAGC	4 cut(s)	84, 468, 526, 712
Bsu15I	ATCGAT	1 cut(s)	246
Bsu36I	CCTNAGG	1 cut(s)	450
BsuI	GTATCC	1 cut(s)	50
BsuRI	GGCC	2 cut(s)	80, 330
BsuTUI	ATCGAT	1 cut(s)	246
BtsCI	GGATG	4 cut(s)	376, 421, 670, 828
BtsIMutI	CAGTG	1 cut(s)	166
Cac8I	GCNNGC	2 cut(s)	642, 657
CciI	TCATGA	1 cut(s)	950
Cfr10I	RCCGGY	1 cut(s)	423
Cfr13I	GGNCC	3 cut(s)	328, 510, 668
ClaI	ATCGAT	1 cut(s)	246
Csp6I	GTAC	5 cut(s)	203, 255, 486, 750, 847
CviAII	CATG	6 cut(s)	94, 286, 445, 460, 689, 951
CviQI	GTAC	5 cut(s)	203, 255, 486, 750, 847
DdeI	CTNAG	4 cut(s)	18, 409, 450, 732
DpnI	GATC	1 cut(s)	245
DpnII	GATC	1 cut(s)	243
DraI	TTTAAA	2 cut(s)	759, 945
DriI	GACNNNNNGTC	1 cut(s)	598
Eam1104I	CTCTTC	1 cut(s)	296
Eam1105I	GACNNNNNGTC	1 cut(s)	598
EarI	CTCTTC	1 cut(s)	296
Ecl136II	GAGCTC	2 cut(s)	90, 166
Eco130I	CCWWGG	3 cut(s)	270, 532, 715
Eco147I	AGGCCT	1 cut(s)	80
Eco24I	GRGCYC	2 cut(s)	92, 168
Eco47I	GGWCC	2 cut(s)	510, 668
Eco53kI	GAGCTC	2 cut(s)	90, 166
Eco57I	CTGAAG	1 cut(s)	142
Eco81I	CCTNAGG	1 cut(s)	450
EcoICRI	GAGCTC	2 cut(s)	90, 166
EcoRII	CCWGG	2 cut(s)	324, 429
EcoT14I	CCWWGG	3 cut(s)	270, 532, 715
EcoT38I	GRGCYC	2 cut(s)	92, 168
ErhI	CCWWGG	3 cut(s)	270, 532, 715
FaeI	CATG	6 cut(s)	97, 289, 448, 463, 692, 954
FaqI	GGGAC	2 cut(s)	177, 561
FatI	CATG	6 cut(s)	93, 285, 444, 459, 688, 950
Fnu4HI	GCNGC	4 cut(s)	73, 457, 540, 726
FokI	GGATG	4 cut(s)	363, 428, 677, 835
FriOI	GRGCYC	2 cut(s)	92, 168
Fsp4HI	GCNGC	4 cut(s)	73, 457, 540, 726
FspBI	CTAG	3 cut(s)	206, 699, 740
GluI	GCNGC	4 cut(s)	73, 457, 540, 726
GsaI	CCCAGC	1 cut(s)	279
HaeIII	GGCC	2 cut(s)	80, 330
HapII	CCGG	1 cut(s)	424
Hin1II	CATG	6 cut(s)	97, 289, 448, 463, 692, 954
HincII	GTYRAC	1 cut(s)	345
HindII	GTYRAC	1 cut(s)	345
HinfI	GANTC	3 cut(s)	20, 306, 620
HpaII	CCGG	1 cut(s)	424
HphI	GGTGA	2 cut(s)	40, 221
Hpy166II	GTNNAC	4 cut(s)	203, 257, 345, 847
Hpy188I	TCNGA	3 cut(s)	15, 111, 822
Hpy188III	TCNNGA	6 cut(s)	194, 478, 590, 731, 838, 951
Hpy8I	GTNNAC	4 cut(s)	203, 257, 345, 847
HpyAV	CCTTC	2 cut(s)	835, 922
HpyCH4III	ACNGT	1 cut(s)	854
HpyCH4V	TGCA	4 cut(s)	130, 138, 542, 562
HpyF10VI	GCNNNNNNNGC	6 cut(s)	144, 153, 272, 536, 641, 684
HpyF3I	CTNAG	4 cut(s)	18, 409, 450, 732
Hsp92II	CATG	6 cut(s)	97, 289, 448, 463, 692, 954
Kzo9I	GATC	1 cut(s)	243
LmnI	GCTCC	3 cut(s)	95, 432, 733
Lsp1109I	GCAGC	4 cut(s)	84, 468, 526, 712
LweI	GCATC	1 cut(s)	385
MaeI	CTAG	3 cut(s)	206, 699, 740
MaeIII	GTNAC	1 cut(s)	590
MalI	GATC	1 cut(s)	245
MboI	GATC	1 cut(s)	243
MboII	GAAGA	1 cut(s)	313
MfeI	CAATTG	1 cut(s)	39
MhlI	GDGCHC	3 cut(s)	92, 168, 423
MluCI	AATT	7 cut(s)	39, 139, 291, 392, 525, 922, 946
MlyI	GAGTC	3 cut(s)	29, 300, 614
MmeI	TCCRAC	1 cut(s)	221
MnlI	CCTC	7 cut(s)	91, 109, 117, 406, 510, 654, 916
MseI	TTAA	3 cut(s)	758, 917, 944
MspI	CCGG	1 cut(s)	424
MspR9I	CCNGG	2 cut(s)	326, 431
MunI	CAATTG	1 cut(s)	39
MvaI	CCWGG	2 cut(s)	326, 431
MwoI	GCNNNNNNNGC	6 cut(s)	144, 153, 272, 536, 641, 684
NdeII	GATC	1 cut(s)	243
NlaIII	CATG	6 cut(s)	97, 289, 448, 463, 692, 954
NlaIV	GGNNCC	4 cut(s)	226, 428, 512, 712
NmuCI	GTSAC	1 cut(s)	590
PagI	TCATGA	1 cut(s)	950
PceI	AGGCCT	1 cut(s)	80
PflFI	GACNNNGTC	1 cut(s)	19
PflMI	CCANNNNNTGG	1 cut(s)	892
PkrI	GCNGC	4 cut(s)	74, 458, 541, 727
PleI	GAGTC	3 cut(s)	28, 300, 614
PpsI	GAGTC	3 cut(s)	28, 300, 614
PshAI	GACNNNNGTC	1 cut(s)	936
Psp124BI	GAGCTC	2 cut(s)	92, 168
Psp6I	CCWGG	2 cut(s)	324, 429
PspFI	CCCAGC	1 cut(s)	275
PspGI	CCWGG	2 cut(s)	324, 429
PspN4I	GGNNCC	4 cut(s)	226, 428, 512, 712
PspPI	GGNCC	3 cut(s)	328, 510, 668
PsyI	GACNNNGTC	1 cut(s)	19
RsaI	GTAC	5 cut(s)	204, 256, 487, 751, 848
RsaNI	GTAC	5 cut(s)	203, 255, 486, 750, 847
SacI	GAGCTC	2 cut(s)	92, 168
SaqAI	TTAA	3 cut(s)	758, 917, 944
SatI	GCNGC	4 cut(s)	73, 457, 540, 726
Sau3AI	GATC	1 cut(s)	243
Sau96I	GGNCC	3 cut(s)	328, 510, 668
ScaI	AGTACT	1 cut(s)	487
SchI	GAGTC	3 cut(s)	29, 300, 614
ScrFI	CCNGG	2 cut(s)	326, 431
SduI	GDGCHC	3 cut(s)	92, 168, 423
SfaNI	GCATC	1 cut(s)	385
SfcI	CTRYAG	3 cut(s)	51, 371, 853
SinI	GGWCC	2 cut(s)	510, 668
Sse9I	AATT	7 cut(s)	39, 139, 291, 392, 525, 922, 946
SseBI	AGGCCT	1 cut(s)	80
SsiI	CCGC	1 cut(s)	216
SspMI	CTAG	3 cut(s)	206, 699, 740
SstI	GAGCTC	2 cut(s)	92, 168
StuI	AGGCCT	1 cut(s)	80
StyD4I	CCNGG	2 cut(s)	324, 429
StyI	CCWWGG	3 cut(s)	270, 532, 715
TaaI	ACNGT	1 cut(s)	854
TaqI	TCGA	4 cut(s)	86, 246, 623, 837
TasI	AATT	7 cut(s)	39, 139, 291, 392, 525, 922, 946
TatI	WGTACW	4 cut(s)	202, 254, 485, 846
Tru1I	TTAA	3 cut(s)	758, 917, 944
Tru9I	TTAA	3 cut(s)	758, 917, 944
TscAI	CASTG	1 cut(s)	166
TseFI	GTSAC	1 cut(s)	590
TseI	GCWGC	4 cut(s)	72, 456, 539, 725
Tsp45I	GTSAC	1 cut(s)	590
TspDTI	ATGAA	5 cut(s)	264, 433, 536, 755, 939
TspGWI	ACGGA	2 cut(s)	179, 217
TspRI	CASTG	1 cut(s)	166
Tth111I	GACNNNGTC	1 cut(s)	19
Van91I	CCANNNNNTGG	1 cut(s)	892
VpaK11BI	GGWCC	2 cut(s)	510, 668
XapI	RAATTY	2 cut(s)	922, 946
XspI	CTAG	3 cut(s)	206, 699, 740
ZrmI	AGTACT	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.