Rh3AG146100

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
N/A
Physical Location & Seq
Reverse (-)
12914936 .. 12915324
389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG146100.1

Sequence Viewer

Length: 345 bp
ATGGATGCCCTATGTAACCATGAACTAGACCTAATCTTGAACTGGGTTAAGGACCCAGACGATAGAAAATCATTCTCTCAGGTCAGTAAGCGATTGTGGGCAGTGGAGCGTCTGAACCGATCATCCATTCGCCTTCTCGAACTCATTCGTCTCCCTCGATTACTTGATAGATTTCCAAACTTGGTCACATTCCAAACATCCCTGCCTCTAAGCGACGCTGACCCAGGGCCGGTCCTGAGTTTCTTCATGCCCAGGGCGAAATTTTTTTTGGTGCCCAAGGTTAGTCTTGAGATTTTTTTGTTGACTATTATGAGATTAATTCAACTTCGAAAAATTATGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

114

Amino Acids

13.39

Weight (kDa)

10.0

Isoelectric Point (pI)

29.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 9 - 41 6.3e-06 F-box
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 271
AcsI RAATTY 1 cut(s) 260
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 2 cut(s) 40, 323
AjnI CCWGG 2 cut(s) 223, 251
AjuI GAANNNNNNNTTGG 2 cut(s) 251, 283
AloI GAACNNNNNNTCC 2 cut(s) 107, 139
Alw26I GTCTC 1 cut(s) 155
AoxI GGCC 1 cut(s) 227
ApoI RAATTY 1 cut(s) 260
AseI ATTAAT 1 cut(s) 317
Asp700I GAANNNNTTC 1 cut(s) 144
AspS9I GGNCC 3 cut(s) 52, 227, 232
AsuII TTCGAA 1 cut(s) 328
AvaII GGWCC 2 cut(s) 52, 232
BaeGI GKGCMC 1 cut(s) 276
BanI GGYRCC 1 cut(s) 271
BciT130I CCWGG 2 cut(s) 225, 253
BcoDI GTCTC 1 cut(s) 155
BfaI CTAG 1 cut(s) 26
Bme1390I CCNGG 2 cut(s) 225, 253
Bme18I GGWCC 2 cut(s) 52, 232
BmgT120I GGNCC 3 cut(s) 52, 227, 232
BmiI GGNNCC 2 cut(s) 54, 273
BmrFI CCNGG 2 cut(s) 225, 253
BmrI ACTGGG 1 cut(s) 52
BmuI ACTGGG 1 cut(s) 52
Bpu14I TTCGAA 1 cut(s) 328
BpuEI CTTGAG 1 cut(s) 308
BsaJI CCNNGG 5 cut(s) 223, 224, 251, 252, 276
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse118I RCCGGY 1 cut(s) 229
Bse1I ACTGG 1 cut(s) 47
BseBI CCWGG 2 cut(s) 225, 253
BseDI CCNNGG 5 cut(s) 223, 224, 251, 252, 276
BseGI GGATG 3 cut(s) 10, 122, 197
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMII CTCAG 2 cut(s) 92, 227
BseNI ACTGG 1 cut(s) 47
BseSI GKGCMC 1 cut(s) 276
BshFI GGCC 1 cut(s) 229
BshNI GGYRCC 1 cut(s) 271
BsiSI CCGG 1 cut(s) 230
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 1 cut(s) 155
BsmBI CGTCTC 1 cut(s) 155
BsnI GGCC 1 cut(s) 229
Bsp119I TTCGAA 1 cut(s) 328
Bsp1286I GDGCHC 1 cut(s) 276
Bsp143I GATC 1 cut(s) 119
BspANI GGCC 1 cut(s) 229
BspCNI CTCAG 2 cut(s) 91, 228
BspLI GGNNCC 2 cut(s) 54, 273
BspT104I TTCGAA 1 cut(s) 328
BspT107I GGYRCC 1 cut(s) 271
BsrFI RCCGGY 1 cut(s) 229
BsrI ACTGG 1 cut(s) 47
BssAI RCCGGY 1 cut(s) 229
BssECI CCNNGG 5 cut(s) 223, 224, 251, 252, 276
BssMI GATC 1 cut(s) 119
BssT1I CCWWGG 1 cut(s) 276
Bst2UI CCWGG 2 cut(s) 225, 253
BstBI TTCGAA 1 cut(s) 328
BstDEI CTNAG 3 cut(s) 78, 209, 236
BstF5I GGATG 3 cut(s) 10, 122, 197
BstKTI GATC 1 cut(s) 122
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 1 cut(s) 119
BstNI CCWGG 2 cut(s) 225, 253
BstSCI CCNGG 2 cut(s) 223, 251
BstSLI GKGCMC 1 cut(s) 276
BsuRI GGCC 1 cut(s) 229
BtsCI GGATG 3 cut(s) 10, 122, 197
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 1 cut(s) 108
Cfr10I RCCGGY 1 cut(s) 229
Cfr13I GGNCC 3 cut(s) 52, 227, 232
CseI GACGC 2 cut(s) 98, 224
CviAII CATG 2 cut(s) 20, 247
CviJI RGCY 1 cut(s) 229
CviKI_1 RGCY 1 cut(s) 229
DdeI CTNAG 3 cut(s) 78, 209, 236
DpnI GATC 1 cut(s) 121
DpnII GATC 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 276
Eco47I GGWCC 2 cut(s) 52, 232
EcoO109I RGGNCCY 1 cut(s) 52
EcoRII CCWGG 2 cut(s) 223, 251
EcoT14I CCWWGG 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 276
Esp3I CGTCTC 1 cut(s) 155
FaeI CATG 2 cut(s) 23, 250
FaiI YATR 5 cut(s) 13, 21, 248, 311, 338
FatI CATG 2 cut(s) 19, 246
FokI GGATG 3 cut(s) 17, 109, 184
FspBI CTAG 1 cut(s) 26
HaeIII GGCC 1 cut(s) 229
HapII CCGG 1 cut(s) 230
HgaI GACGC 2 cut(s) 98, 224
Hin1II CATG 2 cut(s) 23, 250
HincII GTYRAC 1 cut(s) 303
HindII GTYRAC 1 cut(s) 303
HpaII CCGG 1 cut(s) 230
Hpy166II GTNNAC 1 cut(s) 303
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 4 cut(s) 37, 137, 235, 287
Hpy8I GTNNAC 1 cut(s) 303
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 1 cut(s) 143
HpyF3I CTNAG 3 cut(s) 78, 209, 236
Hsp92II CATG 2 cut(s) 23, 250
Kzo9I GATC 1 cut(s) 119
LmnI GCTCC 1 cut(s) 106
MaeI CTAG 1 cut(s) 26
MaeIII GTNAC 2 cut(s) 14, 184
MalI GATC 1 cut(s) 121
MboI GATC 1 cut(s) 119
MboII GAAGA 1 cut(s) 235
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 4 cut(s) 260, 318, 333, 340
MnlI CCTC 2 cut(s) 165, 216
MroXI GAANNNNTTC 1 cut(s) 144
MseI TTAA 3 cut(s) 48, 317, 343
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 2 cut(s) 225, 253
MvaI CCWGG 2 cut(s) 225, 253
NdeII GATC 1 cut(s) 119
NlaIII CATG 2 cut(s) 23, 250
NlaIV GGNNCC 2 cut(s) 54, 273
NmuCI GTSAC 1 cut(s) 184
NspV TTCGAA 1 cut(s) 328
PasI CCCWGGG 2 cut(s) 224, 252
PcsI WCGNNNNNNNCGW 1 cut(s) 154
PdmI GAANNNNTTC 1 cut(s) 144
PpuMI RGGWCCY 1 cut(s) 52
PshBI ATTAAT 1 cut(s) 317
Psp5II RGGWCCY 1 cut(s) 52
Psp6I CCWGG 2 cut(s) 223, 251
PspGI CCWGG 2 cut(s) 223, 251
PspN4I GGNNCC 2 cut(s) 54, 273
PspPI GGNCC 3 cut(s) 52, 227, 232
PspPPI RGGWCCY 1 cut(s) 52
SaqAI TTAA 3 cut(s) 48, 317, 343
Sau3AI GATC 1 cut(s) 119
Sau96I GGNCC 3 cut(s) 52, 227, 232
ScrFI CCNGG 2 cut(s) 225, 253
SduI GDGCHC 1 cut(s) 276
SetI ASST 3 cut(s) 33, 84, 282
SfuI TTCGAA 1 cut(s) 328
SinI GGWCC 2 cut(s) 52, 232
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 4 cut(s) 260, 318, 333, 340
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 2 cut(s) 223, 251
StyI CCWWGG 1 cut(s) 276
TaqI TCGA 3 cut(s) 138, 157, 328
TasI AATT 4 cut(s) 260, 318, 333, 340
Tru1I TTAA 3 cut(s) 48, 317, 343
Tru9I TTAA 3 cut(s) 48, 317, 343
TscAI CASTG 1 cut(s) 108
TseFI GTSAC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 2 cut(s) 36, 235
TspRI CASTG 1 cut(s) 108
VpaK11BI GGWCC 2 cut(s) 52, 232
VspI ATTAAT 1 cut(s) 317
XapI RAATTY 1 cut(s) 260
XmnI GAANNNNTTC 1 cut(s) 144
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.