Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

14044507 .. 14061448

Gene Structure 16942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG154100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGCTCCACACACCGATGAGGGAGCCTAGGAACAACCTCATCCGGCCTAGACCAATGAGGGACCACGCGGGTGTACCCCATCTTAAATGGTTCGGAGTTGAGGGTGAATATAATGTCATGGTTATCGACCTTCTTGGCCCAAGCCTAGAAGACTTGTTCAACTATTGCAATCGGAAGTTCACTTTGAAGACAGTTTTAATGCTTGCAGATCAATTAATTAACCGAGTGGAGTACATGCACTCACGGGGATTTCTTCACCGTGACATAAAGCCTGACAACTTATTAATGGGTCTGGGGCGTAAAGCTAATCAGGTACTTGTCTCAAATCATGTTCATAACTTTGTGTTTTCATGCTTGATTGGAATCTTTTCAATTGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008360 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009826 GO:0009850 GO:0009987 GO:0010033 GO:0010817 GO:0014070 GO:0016043 GO:0016049 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0022622 GO:0032501 GO:0032502 GO:0032989 GO:0033993 GO:0036211 GO:0040007 GO:0042221 GO:0042445 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0098657 GO:0099402 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04310 ko04340 ko04341 ko04390 ko04391 ko04392 ko04540 ko04710 ko04711 map04068 map04310 map04340 map04341 map04390 map04391 map04392 map04540 map04710 map04711

Pfam Domains

Protein Families

Pkinase

Protein Analysis

127

Amino Acids

14.68

Weight (kDa)

9.39

Isoelectric Point (pI)

23.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	31 - 96	2.2e-09	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	68
AciI	CCGC	1 cut(s)	68
AfaI	GTAC	3 cut(s)	75, 233, 315
AgsI	TTSAA	3 cut(s)	160, 187, 372
AleI	CACNNNNGTG	1 cut(s)	69
AluBI	AGCT	1 cut(s)	305
AluI	AGCT	1 cut(s)	305
Alw26I	GTCTC	1 cut(s)	325
AoxI	GGCC	2 cut(s)	44, 136
ApeKI	GCWGC	1 cut(s)	377
AseI	ATTAAT	2 cut(s)	215, 284
Asp700I	GAANNNNTTC	1 cut(s)	367
AspA2I	CCTAGG	1 cut(s)	26
AspS9I	GGNCC	2 cut(s)	61, 137
AsuHPI	GGTGA	2 cut(s)	116, 248
AvaII	GGWCC	1 cut(s)	61
AvrII	CCTAGG	1 cut(s)	26
BbsI	GAAGAC	2 cut(s)	156, 194
BbvI	GCAGC	1 cut(s)	364
BccI	CCATC	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	325
BfaI	CTAG	3 cut(s)	27, 48, 146
BisI	GCNGC	1 cut(s)	378
BlnI	CCTAGG	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	379
Bme18I	GGWCC	1 cut(s)	61
BmgT120I	GGNCC	2 cut(s)	61, 137
BmiI	GGNNCC	2 cut(s)	24, 62
BpiI	GAAGAC	2 cut(s)	156, 194
BsaBI	GATNNNNATC	1 cut(s)	362
BsaJI	CCNNGG	1 cut(s)	26
Bse8I	GATNNNNATC	1 cut(s)	362
BseDI	CCNNGG	1 cut(s)	26
BseGI	GGATG	1 cut(s)	39
BseJI	GATNNNNATC	1 cut(s)	362
BseXI	GCAGC	1 cut(s)	364
Bsh1236I	CGCG	1 cut(s)	68
BshFI	GGCC	2 cut(s)	46, 138
BsiSI	CCGG	1 cut(s)	43
BslFI	GGGAC	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	325
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	2 cut(s)	46, 138
Bsp143I	GATC	1 cut(s)	208
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	2 cut(s)	46, 138
BspFNI	CGCG	1 cut(s)	68
BspLI	GGNNCC	2 cut(s)	24, 62
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	1 cut(s)	208
BssT1I	CCWWGG	1 cut(s)	26
Bst4CI	ACNGT	2 cut(s)	193, 260
BstC8I	GCNNGC	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	39
BstFNI	CGCG	1 cut(s)	68
BstKTI	GATC	1 cut(s)	211
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	1 cut(s)	208
BstNSI	RCATGY	1 cut(s)	238
BstUI	CGCG	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	364
BstV2I	GAAGAC	2 cut(s)	156, 194
BsuRI	GGCC	2 cut(s)	46, 138
BtsCI	GGATG	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	204
Cfr13I	GGNCC	2 cut(s)	61, 137
Csp6I	GTAC	3 cut(s)	74, 232, 314
CviAII	CATG	4 cut(s)	118, 235, 329, 351
CviJI	RGCY	6 cut(s)	25, 46, 138, 144, 271, 305
CviKI_1	RGCY	6 cut(s)	25, 46, 138, 144, 271, 305
CviQI	GTAC	3 cut(s)	74, 232, 314
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	26
FaeI	CATG	4 cut(s)	121, 238, 332, 354
FaiI	YATR	7 cut(s)	111, 119, 236, 266, 330, 336, 352
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	4 cut(s)	117, 234, 328, 350
FauI	CCCGC	1 cut(s)	61
Fnu4HI	GCNGC	1 cut(s)	378
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	1 cut(s)	378
FspBI	CTAG	3 cut(s)	27, 48, 146
GluI	GCNGC	1 cut(s)	378
HaeIII	GGCC	2 cut(s)	46, 138
HapII	CCGG	1 cut(s)	43
Hin1II	CATG	4 cut(s)	121, 238, 332, 354
HinfI	GANTC	1 cut(s)	363
HpaII	CCGG	1 cut(s)	43
HphI	GGTGA	2 cut(s)	116, 248
Hpy166II	GTNNAC	2 cut(s)	74, 180
Hpy188I	TCNGA	2 cut(s)	95, 174
Hpy8I	GTNNAC	2 cut(s)	74, 180
HpyAV	CCTTC	1 cut(s)	140
HpyCH4III	ACNGT	2 cut(s)	193, 260
HpyCH4V	TGCA	3 cut(s)	168, 206, 238
Hsp92II	CATG	4 cut(s)	121, 238, 332, 354
Kzo9I	GATC	1 cut(s)	208
LmnI	GCTCC	2 cut(s)	9, 22
LpnPI	CCDG	4 cut(s)	56, 278, 285, 296
Lsp1109I	GCAGC	1 cut(s)	364
MaeI	CTAG	3 cut(s)	27, 48, 146
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	3 cut(s)	161, 199, 245
MfeI	CAATTG	1 cut(s)	372
MluCI	AATT	3 cut(s)	212, 216, 372
MnlI	CCTC	4 cut(s)	12, 47, 51, 94
MroXI	GAANNNNTTC	1 cut(s)	367
MseI	TTAA	6 cut(s)	84, 197, 215, 219, 284, 382
MslI	CAYNNNNRTG	2 cut(s)	14, 69
MspI	CCGG	1 cut(s)	43
MunI	CAATTG	1 cut(s)	372
MvnI	CGCG	1 cut(s)	68
NdeII	GATC	1 cut(s)	208
NlaIII	CATG	4 cut(s)	121, 238, 332, 354
NlaIV	GGNNCC	2 cut(s)	24, 62
NmuCI	GTSAC	1 cut(s)	260
NspI	RCATGY	1 cut(s)	238
OliI	CACNNNNGTG	1 cut(s)	69
PacI	TTAATTAA	1 cut(s)	219
PdmI	GAANNNNTTC	1 cut(s)	367
PfeI	GAWTC	1 cut(s)	363
PkrI	GCNGC	1 cut(s)	379
PshBI	ATTAAT	2 cut(s)	215, 284
PspN4I	GGNNCC	2 cut(s)	24, 62
PspPI	GGNCC	2 cut(s)	61, 137
RsaI	GTAC	3 cut(s)	75, 233, 315
RsaNI	GTAC	3 cut(s)	74, 232, 314
RseI	CAYNNNNRTG	2 cut(s)	14, 69
SaqAI	TTAA	6 cut(s)	84, 197, 215, 219, 284, 382
SatI	GCNGC	1 cut(s)	378
Sau3AI	GATC	1 cut(s)	208
Sau96I	GGNCC	2 cut(s)	61, 137
SetI	ASST	4 cut(s)	39, 132, 307, 315
SinI	GGWCC	1 cut(s)	61
SmiMI	CAYNNNNRTG	2 cut(s)	14, 69
Sse9I	AATT	3 cut(s)	212, 216, 372
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	3 cut(s)	27, 48, 146
StyI	CCWWGG	1 cut(s)	26
TaaI	ACNGT	2 cut(s)	193, 260
TaqI	TCGA	1 cut(s)	126
TasI	AATT	3 cut(s)	212, 216, 372
TatI	WGTACW	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	363
Tru1I	TTAA	6 cut(s)	84, 197, 215, 219, 284, 382
Tru9I	TTAA	6 cut(s)	84, 197, 215, 219, 284, 382
TseFI	GTSAC	1 cut(s)	260
TseI	GCWGC	1 cut(s)	377
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	2 cut(s)	323, 339
VpaK11BI	GGWCC	1 cut(s)	61
VspI	ATTAAT	2 cut(s)	215, 284
XceI	RCATGY	1 cut(s)	238
XmaJI	CCTAGG	1 cut(s)	26
XmnI	GAANNNNTTC	1 cut(s)	367
XspI	CTAG	3 cut(s)	27, 48, 146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.