Rh3AG155600

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
N/A
Physical Location & Seq
Reverse (-)
14235599 .. 14249278
13680 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG155600.1

Sequence Viewer

Length: 648 bp
ATGTCTTGTCCAATGCACAATGGTAGATGGCTTGATCTTACTTCACACCACTCTGGTCTACTTCCCGACGAGGGCTTCAGAAGTTTCGTGCTTTCCATACTAGTTGCGGTGTGTGCGTCCCTTGGATGCGACCTTTGTCTTCGACTTTCACTTCCAATTCGGTTTCTGAGGGCTTTTGTCTTCGTGTTGCTTATCAAGTATCTTGAACAAACAACTAATTTTTTTGGTTCCTGGGCATCAGTAATCCAATTGCTCAAATCAGATGTGTTCTTAAAGAAGACATTGAAGTTAAGCAACGAGGACATCATTGGCTCTGGAGAGTATGGGACAATTTATATACTTACACAGGATGACAGCATGGCCTTTGCTGTGAAAAGATTGAACAGAGGAAGTGCAGATAGAGATCGAAGATTTGAGAAGAAAATTGAAGCAATGGGAGATATAAAGCACCGGAACATCGTGACTCTTAATGGATATCACACTGCTCCACATTATAACCTTCTTATATACGAACTGGTAGCTTATGAAGGCTTGGATGGAGTGCTTCATGGTCTGATCACTATCCAACAAGCATTTGGCTTGGCTGTCCAGATACAAAATAGCACTAGGTGCTGCAAAGAAGAATATCATATCTTCATTCCAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

215

Amino Acids

24.36

Weight (kDa)

7.66

Isoelectric Point (pI)

39.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 99 - 200 3.5e-09 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 100 - 198 3.4e-09 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 495
AccI GTMKAC 1 cut(s) 58
AciI CCGC 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 61
AdeI CACNNNGTG 1 cut(s) 609
AfiI CCNNNNNNNGG 1 cut(s) 71
AgsI TTSAA 4 cut(s) 206, 286, 382, 428
AhlI ACTAGT 1 cut(s) 100
AjnI CCWGG 1 cut(s) 230
AluBI AGCT 1 cut(s) 521
AluI AGCT 1 cut(s) 521
AoxI GGCC 1 cut(s) 360
ApeKI GCWGC 1 cut(s) 612
BbsI GAAGAC 3 cut(s) 131, 172, 284
BbvI GCAGC 1 cut(s) 599
BccI CCATC 2 cut(s) 21, 530
BciT130I CCWGG 1 cut(s) 232
BclI TGATCA 1 cut(s) 555
BcuI ACTAGT 1 cut(s) 100
BfaI CTAG 2 cut(s) 101, 606
BisI GCNGC 1 cut(s) 613
BlsI GCNGC 1 cut(s) 614
Bme1390I CCNGG 1 cut(s) 232
BmiI GGNNCC 1 cut(s) 229
BmrFI CCNGG 1 cut(s) 232
BmsI GCATC 2 cut(s) 116, 245
BoxI GACNNNNGTC 1 cut(s) 135
BpiI GAAGAC 3 cut(s) 131, 172, 284
BpmI CTGGAG 1 cut(s) 336
BsaBI GATNNNNATC 2 cut(s) 402, 560
BsaJI CCNNGG 2 cut(s) 121, 231
BsaWI WCCGGW 1 cut(s) 450
Bsc4I CCNNNNNNNGG 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 519
Bse3DI GCAATG 1 cut(s) 438
Bse8I GATNNNNATC 2 cut(s) 402, 560
BseBI CCWGG 1 cut(s) 232
BseDI CCNNGG 2 cut(s) 121, 231
BseGI GGATG 3 cut(s) 131, 355, 541
BseJI GATNNNNATC 2 cut(s) 402, 560
BseLI CCNNNNNNNGG 1 cut(s) 71
BseMI GCAATG 1 cut(s) 438
BseMII CTCAG 1 cut(s) 158
BseNI ACTGG 1 cut(s) 519
BseXI GCAGC 1 cut(s) 599
BsgI GTGCAG 1 cut(s) 414
BshFI GGCC 1 cut(s) 362
BsiSI CCGG 1 cut(s) 451
BslFI GGGAC 2 cut(s) 103, 340
BslI CCNNNNNNNGG 1 cut(s) 71
BsmFI GGGAC 2 cut(s) 103, 340
BsnI GGCC 1 cut(s) 362
Bsp143I GATC 3 cut(s) 34, 403, 555
BspACI CCGC 1 cut(s) 107
BspANI GGCC 1 cut(s) 362
BspCNI CTCAG 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 229
BsrDI GCAATG 1 cut(s) 438
BsrI ACTGG 1 cut(s) 519
BssECI CCNNGG 2 cut(s) 121, 231
BssMI GATC 3 cut(s) 34, 403, 555
BssT1I CCWWGG 1 cut(s) 121
Bst2UI CCWGG 1 cut(s) 232
BstAPI GCANNNNNTGC 1 cut(s) 609
BstDEI CTNAG 1 cut(s) 167
BstF5I GGATG 3 cut(s) 131, 355, 541
BstKTI GATC 3 cut(s) 37, 406, 558
BstMBI GATC 3 cut(s) 34, 403, 555
BstMWI GCNNNNNNNGC 2 cut(s) 113, 609
BstNI CCWGG 1 cut(s) 232
BstPAI GACNNNNGTC 1 cut(s) 135
BstSCI CCNGG 1 cut(s) 230
BstV1I GCAGC 1 cut(s) 599
BstV2I GAAGAC 3 cut(s) 131, 172, 284
BsuRI GGCC 1 cut(s) 362
BtsCI GGATG 3 cut(s) 131, 355, 541
BtsI GCAGTG 1 cut(s) 480
BtsIMutI CAGTG 1 cut(s) 480
CseI GACGC 1 cut(s) 105
CviAII CATG 2 cut(s) 358, 548
CviJI RGCY 9 cut(s) 31, 75, 173, 312, 362, 521, 531, 579, 584
CviKI_1 RGCY 9 cut(s) 31, 75, 173, 312, 362, 521, 531, 579, 584
DdeI CTNAG 1 cut(s) 167
DpnI GATC 3 cut(s) 36, 405, 557
DpnII GATC 3 cut(s) 34, 403, 555
DraIII CACNNNGTG 1 cut(s) 609
Eco130I CCWWGG 1 cut(s) 121
Eco32I GATATC 1 cut(s) 476
Eco57I CTGAAG 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 230
EcoRV GATATC 1 cut(s) 476
EcoT14I CCWWGG 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 121
FaeI CATG 2 cut(s) 361, 551
FaqI GGGAC 2 cut(s) 103, 340
FatI CATG 2 cut(s) 357, 547
FbaI TGATCA 1 cut(s) 555
FblI GTMKAC 1 cut(s) 58
Fnu4HI GCNGC 1 cut(s) 613
FokI GGATG 3 cut(s) 138, 362, 548
Fsp4HI GCNGC 1 cut(s) 613
FspBI CTAG 2 cut(s) 101, 606
GluI GCNGC 1 cut(s) 613
GsuI CTGGAG 1 cut(s) 336
HaeIII GGCC 1 cut(s) 362
HapII CCGG 1 cut(s) 451
HgaI GACGC 1 cut(s) 105
Hin1II CATG 2 cut(s) 361, 551
HinfI GANTC 1 cut(s) 463
HpaII CCGG 1 cut(s) 451
Hpy166II GTNNAC 1 cut(s) 59
Hpy188I TCNGA 5 cut(s) 80, 168, 262, 555, 647
Hpy188III TCNNGA 5 cut(s) 65, 203, 315, 460, 589
Hpy8I GTNNAC 1 cut(s) 59
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 2 cut(s) 509, 521
HpyCH4V TGCA 3 cut(s) 16, 395, 615
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 609
HpyF3I CTNAG 1 cut(s) 167
Hsp92II CATG 2 cut(s) 361, 551
Ksp22I TGATCA 1 cut(s) 555
Kzo9I GATC 3 cut(s) 34, 403, 555
LmnI GCTCC 1 cut(s) 490
LpnPI CCDG 8 cut(s) 39, 217, 244, 300, 332, 464, 500, 602
Lsp1109I GCAGC 1 cut(s) 599
LweI GCATC 2 cut(s) 116, 245
MaeI CTAG 2 cut(s) 101, 606
MaeIII GTNAC 1 cut(s) 460
MalI GATC 3 cut(s) 36, 405, 557
MboI GATC 3 cut(s) 34, 403, 555
MboII GAAGA 7 cut(s) 131, 172, 289, 420, 430, 625, 632
MfeI CAATTG 1 cut(s) 248
MluCI AATT 5 cut(s) 156, 217, 248, 330, 423
MlyI GAGTC 1 cut(s) 457
MmeI TCCRAC 1 cut(s) 589
MnlI CCTC 4 cut(s) 64, 162, 292, 380
MseI TTAA 3 cut(s) 272, 290, 468
MspI CCGG 1 cut(s) 451
MspR9I CCNGG 1 cut(s) 232
MunI CAATTG 1 cut(s) 248
MvaI CCWGG 1 cut(s) 232
MwoI GCNNNNNNNGC 2 cut(s) 113, 609
NdeII GATC 3 cut(s) 34, 403, 555
NlaIII CATG 2 cut(s) 361, 551
NlaIV GGNNCC 1 cut(s) 229
NmuCI GTSAC 1 cut(s) 460
PkrI GCNGC 1 cut(s) 614
PleI GAGTC 1 cut(s) 457
PpsI GAGTC 1 cut(s) 457
PshAI GACNNNNGTC 1 cut(s) 135
PsiI TTATAA 1 cut(s) 495
Psp6I CCWGG 1 cut(s) 230
PspGI CCWGG 1 cut(s) 230
PspN4I GGNNCC 1 cut(s) 229
SaqAI TTAA 3 cut(s) 272, 290, 468
SatI GCNGC 1 cut(s) 613
Sau3AI GATC 3 cut(s) 34, 403, 555
SchI GAGTC 1 cut(s) 457
ScrFI CCNGG 1 cut(s) 232
SetI ASST 4 cut(s) 135, 501, 523, 611
SfaNI GCATC 2 cut(s) 116, 245
SpeI ACTAGT 1 cut(s) 100
Sse9I AATT 5 cut(s) 156, 217, 248, 330, 423
SsiI CCGC 1 cut(s) 107
SspMI CTAG 2 cut(s) 101, 606
StyD4I CCNGG 1 cut(s) 230
StyI CCWWGG 1 cut(s) 121
TaqI TCGA 2 cut(s) 142, 406
TasI AATT 5 cut(s) 156, 217, 248, 330, 423
Tru1I TTAA 3 cut(s) 272, 290, 468
Tru9I TTAA 3 cut(s) 272, 290, 468
TscAI CASTG 1 cut(s) 487
TseFI GTSAC 1 cut(s) 460
TseI GCWGC 1 cut(s) 612
Tsp45I GTSAC 1 cut(s) 460
TspDTI ATGAA 3 cut(s) 536, 540, 625
TspRI CASTG 1 cut(s) 487
XcmI CCANNNNNNNNNTGG 1 cut(s) 572
XmiI GTMKAC 1 cut(s) 58
XspI CTAG 2 cut(s) 101, 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.