Rh3AG242300

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
N/A
Physical Location & Seq
Forward (+)
25466525 .. 25470284
3760 bp
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UTR
Exon/CDS
Intron
Rh3AG242300.1

Sequence Viewer

Length: 204 bp
ATGAAAGGTGCTTTTCGCAAGGCAGTTGCTAAACTTGAACGCAGACACAAGAGTCACATGGGTCAATGGATGGGAGCTCTTTCCAAAGCAGCTAATATGTCTGGATGGCCTTTATCCGATGGCAAAAGTCGGGAATTGGTAGTATTGAGGAGGGGATGGCACCAAGAGGCAGAGCCTGGATTTGACACTAGGGAGGACCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

67

Amino Acids

7.63

Weight (kDa)

10.26

Isoelectric Point (pI)

57.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 51
AccB1I GGYRCC 1 cut(s) 159
AgsI TTSAA 1 cut(s) 38
AjnI CCWGG 1 cut(s) 175
AluBI AGCT 2 cut(s) 77, 92
AluI AGCT 2 cut(s) 77, 92
Alw21I GWGCWC 1 cut(s) 79
AlwNI CAGNNNCTG 1 cut(s) 176
AoxI GGCC 1 cut(s) 107
ApeKI GCWGC 1 cut(s) 89
AspS9I GGNCC 1 cut(s) 196
AvaII GGWCC 1 cut(s) 196
BanI GGYRCC 1 cut(s) 159
BanII GRGCYC 1 cut(s) 79
Bbv12I GWGCWC 1 cut(s) 79
BbvI GCAGC 1 cut(s) 101
BccI CCATC 4 cut(s) 64, 99, 113, 150
BciT130I CCWGG 1 cut(s) 177
BfaI CTAG 1 cut(s) 189
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 177
Bme18I GGWCC 1 cut(s) 196
BmgT120I GGNCC 1 cut(s) 196
BmiI GGNNCC 1 cut(s) 161
BmrFI CCNGG 1 cut(s) 177
BseBI CCWGG 1 cut(s) 177
BseGI GGATG 3 cut(s) 75, 110, 161
BseRI GAGGAG 1 cut(s) 163
BseXI GCAGC 1 cut(s) 101
BshFI GGCC 1 cut(s) 109
BshNI GGYRCC 1 cut(s) 159
BsiHKAI GWGCWC 1 cut(s) 79
BsnI GGCC 1 cut(s) 109
Bsp1286I GDGCHC 1 cut(s) 79
BspANI GGCC 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 161
BspT107I GGYRCC 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 177
BstF5I GGATG 3 cut(s) 75, 110, 161
BstNI CCWGG 1 cut(s) 177
BstSCI CCNGG 1 cut(s) 175
BstV1I GCAGC 1 cut(s) 101
BsuRI GGCC 1 cut(s) 109
BtsCI GGATG 3 cut(s) 75, 110, 161
CaiI CAGNNNCTG 1 cut(s) 176
Cfr13I GGNCC 1 cut(s) 196
CviAII CATG 1 cut(s) 58
CviJI RGCY 4 cut(s) 77, 92, 109, 175
CviKI_1 RGCY 4 cut(s) 77, 92, 109, 175
DrdI GACNNNNNNGTC 1 cut(s) 51
DseDI GACNNNNNNGTC 1 cut(s) 51
Ecl136II GAGCTC 1 cut(s) 77
Eco24I GRGCYC 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 196
Eco53kI GAGCTC 1 cut(s) 77
EcoICRI GAGCTC 1 cut(s) 77
EcoO109I RGGNCCY 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 175
EcoT38I GRGCYC 1 cut(s) 79
FaeI CATG 1 cut(s) 61
FaiI YATR 3 cut(s) 59, 98, 202
FatI CATG 1 cut(s) 57
Fnu4HI GCNGC 1 cut(s) 90
FokI GGATG 3 cut(s) 82, 117, 168
FriOI GRGCYC 1 cut(s) 79
Fsp4HI GCNGC 1 cut(s) 90
FspBI CTAG 1 cut(s) 189
GluI GCNGC 1 cut(s) 90
HaeIII GGCC 1 cut(s) 109
Hin1II CATG 1 cut(s) 61
HinfI GANTC 1 cut(s) 52
Hpy188I TCNGA 1 cut(s) 118
Hpy188III TCNNGA 2 cut(s) 102, 131
Hsp92II CATG 1 cut(s) 61
LmnI GCTCC 1 cut(s) 74
LpnPI CCDG 3 cut(s) 87, 162, 189
Lsp1109I GCAGC 1 cut(s) 101
MaeI CTAG 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 53
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 1 cut(s) 134
MlyI GAGTC 1 cut(s) 61
MnlI CCTC 4 cut(s) 141, 144, 160, 187
MspR9I CCNGG 1 cut(s) 177
MvaI CCWGG 1 cut(s) 177
NlaIII CATG 1 cut(s) 61
NlaIV GGNNCC 1 cut(s) 161
NmuCI GTSAC 1 cut(s) 53
PkrI GCNGC 1 cut(s) 91
PleI GAGTC 1 cut(s) 60
PpsI GAGTC 1 cut(s) 60
PpuMI RGGWCCY 1 cut(s) 196
Psp124BI GAGCTC 1 cut(s) 79
Psp5II RGGWCCY 1 cut(s) 196
Psp6I CCWGG 1 cut(s) 175
PspGI CCWGG 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 161
PspPI GGNCC 1 cut(s) 196
PspPPI RGGWCCY 1 cut(s) 196
PstNI CAGNNNCTG 1 cut(s) 176
SacI GAGCTC 1 cut(s) 79
SatI GCNGC 1 cut(s) 90
Sau96I GGNCC 1 cut(s) 196
SchI GAGTC 1 cut(s) 61
ScrFI CCNGG 1 cut(s) 177
SduI GDGCHC 1 cut(s) 79
SetI ASST 4 cut(s) 10, 79, 94, 201
SgeI CNNG 9 cut(s) 31, 47, 61, 70, 114, 143, 176, 188, 189
SinI GGWCC 1 cut(s) 196
Sse9I AATT 1 cut(s) 134
SspMI CTAG 1 cut(s) 189
SstI GAGCTC 1 cut(s) 79
StyD4I CCNGG 1 cut(s) 175
TasI AATT 1 cut(s) 134
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 1 cut(s) 89
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 196
XspI CTAG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.