Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

25716764 .. 25723716

Gene Structure 6953 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG244000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGAAGCATTTGCCTAAGCACCCGAATATTGTAAGCTTGAAAGATACGTATGAGGATGATAATGCGGTCCATCTTGTTATGGAGCTCTGTGAGGGCGGTGACCTCTTCGATCGGATCGTCTCCAGGGGGCATTACACCGAGCGTGCCGCTGCCGCTGTCACTAAGACTATTGTGGAAGTTGTTCAGATGTGCCACAAGCATGGTGTGATGCATCGGGATCTCAAACCTGAGAACTTTTTATTTGCAAACGAGAAGGAAACACCGCCTTTGAAGGCAACTGTACCAGGTGAAAGATTTAGTGAAATTGTTGGAAGTCCATACTACATGGCTCCCGAGGTGCTGAGGCGCAATTATGGTCGTGAAGTTGATGTTTGGAGTGCTGGAGTTATACTTTACATTTTACTTTGTGGTGTTCCACCTTTCTGGGCAGAAACTGAACAGGGAATTGCACAAGCAATTATACGGTCTGTTGTAGATTTTAAGAGGGACCCCTGGCCTAAGATCACAAACATGCTATGTTTAAACAAACGTAATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0004697 GO:0004698 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8 Pkinase

Protein Analysis

179

Amino Acids

20.42

Weight (kDa)

6.39

Isoelectric Point (pI)

46.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 153	4.3e-13	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	2 - 159	2.9e-44	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	65, 96, 147, 153, 263
AclWI	GGATC	2 cut(s)	122, 225
AfaI	GTAC	1 cut(s)	282
AgsI	TTSAA	2 cut(s)	40, 271
AjnI	CCWGG	3 cut(s)	122, 283, 491
AluBI	AGCT	2 cut(s)	36, 85
AluI	AGCT	2 cut(s)	36, 85
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	124
AlwI	GGATC	2 cut(s)	122, 225
AlwNI	CAGNNNCTG	1 cut(s)	434
Ama87I	CYCGRG	1 cut(s)	332
AoxI	GGCC	1 cut(s)	494
ApeKI	GCWGC	1 cut(s)	149
Asp700I	GAANNNNTTC	1 cut(s)	180
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	2 cut(s)	67, 487
AsuHPI	GGTGA	2 cut(s)	110, 299
AvaI	CYCGRG	1 cut(s)	332
AvaII	GGWCC	2 cut(s)	67, 487
BanII	GRGCYC	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	87
BbvCI	CCTCAGC	1 cut(s)	341
BbvI	GCAGC	1 cut(s)	136
BccI	CCATC	1 cut(s)	78
BciT130I	CCWGG	3 cut(s)	124, 285, 493
BcoDI	GTCTC	1 cut(s)	124
BisI	GCNGC	3 cut(s)	147, 150, 153
BlsI	GCNGC	3 cut(s)	148, 151, 154
Bme1390I	CCNGG	3 cut(s)	124, 285, 493
Bme18I	GGWCC	2 cut(s)	67, 487
BmeT110I	CYCGRG	1 cut(s)	332
BmgT120I	GGNCC	2 cut(s)	67, 487
BmiI	GGNNCC	3 cut(s)	330, 488, 489
BmrFI	CCNGG	3 cut(s)	124, 285, 493
BmsI	GCATC	2 cut(s)	198, 220
BpmI	CTGGAG	2 cut(s)	106, 402
Bpu10I	CCTNAGC	2 cut(s)	15, 341
BsaAI	YACGTR	1 cut(s)	48
BsaJI	CCNNGG	3 cut(s)	123, 333, 491
BseBI	CCWGG	3 cut(s)	124, 285, 493
BseDI	CCNNGG	3 cut(s)	123, 333, 491
BseGI	GGATG	1 cut(s)	61
BseMII	CTCAG	2 cut(s)	219, 332
BseXI	GCAGC	1 cut(s)	136
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	1 cut(s)	496
BsiEI	CGRYCG	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	87
BsiHKCI	CYCGRG	1 cut(s)	332
BslFI	GGGAC	1 cut(s)	500
BsmAI	GTCTC	1 cut(s)	124
BsmBI	CGTCTC	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	500
BsnI	GGCC	1 cut(s)	496
BsoBI	CYCGRG	1 cut(s)	332
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	4 cut(s)	109, 114, 217, 501
BspACI	CCGC	5 cut(s)	65, 96, 147, 153, 263
BspANI	GGCC	1 cut(s)	496
BspCNI	CTCAG	2 cut(s)	220, 333
BspLI	GGNNCC	3 cut(s)	330, 488, 489
BspPI	GGATC	2 cut(s)	122, 225
BssECI	CCNNGG	3 cut(s)	123, 333, 491
BssMI	GATC	4 cut(s)	109, 114, 217, 501
Bst2UI	CCWGG	3 cut(s)	124, 285, 493
Bst4CI	ACNGT	2 cut(s)	280, 465
Bst6I	CTCTTC	1 cut(s)	110
BstBAI	YACGTR	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	5 cut(s)	15, 162, 228, 341, 498
BstEII	GGTNACC	1 cut(s)	98
BstF5I	GGATG	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	4 cut(s)	112, 117, 220, 504
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	4 cut(s)	109, 114, 217, 501
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstNI	CCWGG	3 cut(s)	124, 285, 493
BstNSI	RCATGY	1 cut(s)	514
BstPI	GGTNACC	1 cut(s)	98
BstSCI	CCNGG	3 cut(s)	122, 283, 491
BstSNI	TACGTA	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	136
BstX2I	RGATCY	1 cut(s)	217
BstXI	CCANNNNNNTGG	2 cut(s)	200, 423
BstYI	RGATCY	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	496
BtsCI	GGATG	1 cut(s)	61
Cac8I	GCNNGC	1 cut(s)	144
CaiI	CAGNNNCTG	1 cut(s)	434
CfoI	GCGC	1 cut(s)	348
Cfr13I	GGNCC	2 cut(s)	67, 487
CsiI	ACCWGGT	1 cut(s)	283
Csp6I	GTAC	1 cut(s)	281
CviAII	CATG	3 cut(s)	200, 325, 511
CviJI	RGCY	4 cut(s)	36, 85, 329, 496
CviKI_1	RGCY	4 cut(s)	36, 85, 329, 496
CviQI	GTAC	1 cut(s)	281
DdeI	CTNAG	5 cut(s)	15, 162, 228, 341, 498
DpnI	GATC	4 cut(s)	111, 116, 219, 503
DpnII	GATC	4 cut(s)	109, 114, 217, 501
DraI	TTTAAA	1 cut(s)	522
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
Ecl136II	GAGCTC	1 cut(s)	85
Eco105I	TACGTA	1 cut(s)	48
Eco24I	GRGCYC	1 cut(s)	87
Eco47I	GGWCC	2 cut(s)	67, 487
Eco53kI	GAGCTC	1 cut(s)	85
Eco88I	CYCGRG	1 cut(s)	332
Eco91I	GGTNACC	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	85
EcoO109I	RGGNCCY	1 cut(s)	487
EcoO65I	GGTNACC	1 cut(s)	98
EcoRII	CCWGG	3 cut(s)	122, 283, 491
EcoT22I	ATGCAT	1 cut(s)	213
EcoT38I	GRGCYC	1 cut(s)	87
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	3 cut(s)	203, 328, 514
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	3 cut(s)	199, 324, 510
Fnu4HI	GCNGC	3 cut(s)	147, 150, 153
FokI	GGATG	1 cut(s)	68
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	3 cut(s)	147, 150, 153
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	3 cut(s)	147, 150, 153
GsuI	CTGGAG	2 cut(s)	106, 402
HaeIII	GGCC	1 cut(s)	496
HhaI	GCGC	1 cut(s)	348
Hin1II	CATG	3 cut(s)	203, 328, 514
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HindIII	AAGCTT	1 cut(s)	34
HphI	GGTGA	2 cut(s)	110, 299
Hpy188I	TCNGA	2 cut(s)	114, 186
Hpy188III	TCNNGA	3 cut(s)	215, 332, 359
HpyAV	CCTTC	2 cut(s)	247, 265
HpyCH4III	ACNGT	2 cut(s)	280, 465
HpyCH4IV	ACGT	2 cut(s)	47, 529
HpyCH4V	TGCA	3 cut(s)	211, 245, 449
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	5 cut(s)	15, 162, 228, 341, 498
HpySE526I	ACGT	2 cut(s)	47, 529
Hsp92II	CATG	3 cut(s)	203, 328, 514
HspAI	GCGC	1 cut(s)	346
KflI	GGGWCCC	1 cut(s)	487
Kzo9I	GATC	4 cut(s)	109, 114, 217, 501
LmnI	GCTCC	2 cut(s)	82, 334
Lsp1109I	GCAGC	1 cut(s)	136
LweI	GCATC	2 cut(s)	198, 220
MabI	ACCWGGT	1 cut(s)	283
MaeII	ACGT	2 cut(s)	47, 529
MaeIII	GTNAC	2 cut(s)	98, 157
MalI	GATC	4 cut(s)	111, 116, 219, 503
MboI	GATC	4 cut(s)	109, 114, 217, 501
MboII	GAAGA	1 cut(s)	97
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	4 cut(s)	303, 349, 444, 456
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	6 cut(s)	46, 85, 113, 328, 336, 477
Mph1103I	ATGCAT	1 cut(s)	213
MroXI	GAANNNNTTC	1 cut(s)	180
MseI	TTAA	2 cut(s)	480, 521
MslI	CAYNNNNRTG	2 cut(s)	198, 509
MspA1I	CMGCKG	2 cut(s)	149, 155
MspR9I	CCNGG	3 cut(s)	124, 285, 493
MssI	GTTTAAAC	1 cut(s)	522
MvaI	CCWGG	3 cut(s)	124, 285, 493
MwoI	GCNNNNNNNGC	1 cut(s)	152
NdeII	GATC	4 cut(s)	109, 114, 217, 501
NlaIII	CATG	3 cut(s)	203, 328, 514
NlaIV	GGNNCC	3 cut(s)	330, 488, 489
NmuCI	GTSAC	2 cut(s)	98, 157
NsiI	ATGCAT	1 cut(s)	213
NspI	RCATGY	1 cut(s)	514
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	180
PkrI	GCNGC	3 cut(s)	148, 151, 154
Ple19I	CGATCG	1 cut(s)	112
PmeI	GTTTAAAC	1 cut(s)	522
Ppu21I	YACGTR	1 cut(s)	48
PpuMI	RGGWCCY	1 cut(s)	487
Psp124BI	GAGCTC	1 cut(s)	87
Psp5II	RGGWCCY	1 cut(s)	487
Psp6I	CCWGG	3 cut(s)	122, 283, 491
PspEI	GGTNACC	1 cut(s)	98
PspGI	CCWGG	3 cut(s)	122, 283, 491
PspN4I	GGNNCC	3 cut(s)	330, 488, 489
PspPI	GGNCC	2 cut(s)	67, 487
PspPPI	RGGWCCY	1 cut(s)	487
PstNI	CAGNNNCTG	1 cut(s)	434
PsuI	RGATCY	1 cut(s)	217
PvuI	CGATCG	1 cut(s)	112
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
RseI	CAYNNNNRTG	2 cut(s)	198, 509
SacI	GAGCTC	1 cut(s)	87
SaqAI	TTAA	2 cut(s)	480, 521
SatI	GCNGC	3 cut(s)	147, 150, 153
Sau3AI	GATC	4 cut(s)	109, 114, 217, 501
Sau96I	GGNCC	2 cut(s)	67, 487
ScrFI	CCNGG	3 cut(s)	124, 285, 493
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	9 cut(s)	38, 50, 87, 105, 229, 289, 339, 421, 532
SexAI	ACCWGGT	1 cut(s)	283
SfaNI	GCATC	2 cut(s)	198, 220
SinI	GGWCC	2 cut(s)	67, 487
SmiMI	CAYNNNNRTG	2 cut(s)	198, 509
SnaBI	TACGTA	1 cut(s)	48
Sse9I	AATT	4 cut(s)	303, 349, 444, 456
SsiI	CCGC	5 cut(s)	65, 96, 147, 153, 263
SspI	AATATT	1 cut(s)	28
SstI	GAGCTC	1 cut(s)	87
StyD4I	CCNGG	3 cut(s)	122, 283, 491
TaaI	ACNGT	2 cut(s)	280, 465
TaiI	ACGT	2 cut(s)	50, 532
TaqI	TCGA	1 cut(s)	108
TasI	AATT	4 cut(s)	303, 349, 444, 456
TauI	GCSGC	2 cut(s)	149, 155
Tru1I	TTAA	2 cut(s)	480, 521
Tru9I	TTAA	2 cut(s)	480, 521
TseFI	GTSAC	2 cut(s)	98, 157
TseI	GCWGC	1 cut(s)	149
Tsp45I	GTSAC	2 cut(s)	98, 157
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	2 cut(s)	67, 487
XceI	RCATGY	1 cut(s)	514
XmnI	GAANNNNTTC	1 cut(s)	180
Zsp2I	ATGCAT	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.