Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

30642058 .. 30643511

Gene Structure 1454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG269200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGCCAGGATGCAAAATTCCACAGGCTATATGTGGTAGATTCAATGAATTAAGGGAAGAGAGATTCCAAAGTGTGGTTTACTACACTTGGCCCCTATTGCTTGATTTGCTCAGCGGCCGACATATTCCCCCAAGCCATGCACTTGACCTGATACGAGACAAAGGTTTTCTCATTCTGATGGACTTAGGCTTGAGCGGTCAATTTTTAGAAGATGATGCAACTAAACTGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

77

Amino Acids

8.77

Weight (kDa)

5.51

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	73
AccBSI	CCGCTC	1 cut(s)	195
AciI	CCGC	2 cut(s)	114, 195
AcoI	YGGCCR	1 cut(s)	115
AcsI	RAATTY	1 cut(s)	15
AfiI	CCNNNNNNNGG	1 cut(s)	73
AgsI	TTSAA	1 cut(s)	43
AjnI	CCWGG	1 cut(s)	4
Alw26I	GTCTC	1 cut(s)	150
AoxI	GGCC	2 cut(s)	89, 115
ApoI	RAATTY	1 cut(s)	15
AspS9I	GGNCC	1 cut(s)	90
BccI	CCATC	1 cut(s)	172
BciT130I	CCWGG	1 cut(s)	6
BcoDI	GTCTC	1 cut(s)	150
BisI	GCNGC	1 cut(s)	115
BlpI	GCTNAGC	1 cut(s)	110
BlsI	GCNGC	1 cut(s)	116
Bme1390I	CCNGG	1 cut(s)	6
BmgT120I	GGNCC	1 cut(s)	90
BmiI	GGNNCC	1 cut(s)	92
BmrFI	CCNGG	1 cut(s)	6
BmsI	GCATC	1 cut(s)	205
Bpu1102I	GCTNAGC	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse1I	ACTGG	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	6
BseGI	GGATG	1 cut(s)	14
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	124
BseNI	ACTGG	1 cut(s)	231
BseX3I	CGGCCG	1 cut(s)	115
Bsh1285I	CGRYCG	1 cut(s)	118
BshFI	GGCC	2 cut(s)	91, 117
BsiEI	CGRYCG	1 cut(s)	118
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmAI	GTCTC	1 cut(s)	150
BsnI	GGCC	2 cut(s)	91, 117
Bsp1720I	GCTNAGC	1 cut(s)	110
BspACI	CCGC	2 cut(s)	114, 195
BspANI	GGCC	2 cut(s)	91, 117
BspCNI	CTCAG	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	92
BsrBI	CCGCTC	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	6
Bst6I	CTCTTC	1 cut(s)	51
BstDEI	CTNAG	2 cut(s)	110, 184
BstF5I	GGATG	1 cut(s)	14
BstMAI	GTCTC	1 cut(s)	150
BstMCI	CGRYCG	1 cut(s)	118
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 106
BstNI	CCWGG	1 cut(s)	6
BstSCI	CCNGG	1 cut(s)	4
BstZI	CGGCCG	1 cut(s)	115
BsuRI	GGCC	2 cut(s)	91, 117
BtsCI	GGATG	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	90
CviAII	CATG	1 cut(s)	137
CviJI	RGCY	5 cut(s)	26, 91, 117, 135, 189
CviKI_1	RGCY	5 cut(s)	26, 91, 117, 135, 189
DdeI	CTNAG	2 cut(s)	110, 184
EaeI	YGGCCR	1 cut(s)	115
EagI	CGGCCG	1 cut(s)	115
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
EclXI	CGGCCG	1 cut(s)	115
Eco52I	CGGCCG	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	4
FaeI	CATG	1 cut(s)	140
FaiI	YATR	4 cut(s)	29, 31, 123, 138
FatI	CATG	1 cut(s)	136
Fnu4HI	GCNGC	1 cut(s)	115
FokI	GGATG	1 cut(s)	21
Fsp4HI	GCNGC	1 cut(s)	115
GluI	GCNGC	1 cut(s)	115
HaeIII	GGCC	2 cut(s)	91, 117
Hin1II	CATG	1 cut(s)	140
HinfI	GANTC	2 cut(s)	39, 63
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	1 cut(s)	177
Hpy8I	GTNNAC	1 cut(s)	79
HpyCH4V	TGCA	3 cut(s)	12, 140, 218
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 106
HpyF3I	CTNAG	2 cut(s)	110, 184
Hsp92II	CATG	1 cut(s)	140
LpnPI	CCDG	4 cut(s)	8, 18, 161, 212
LweI	GCATC	1 cut(s)	205
MbiI	CCGCTC	1 cut(s)	195
MboII	GAAGA	2 cut(s)	68, 221
MluCI	AATT	3 cut(s)	15, 47, 200
MseI	TTAA	1 cut(s)	50
MslI	CAYNNNNRTG	1 cut(s)	176
MspA1I	CMGCKG	1 cut(s)	114
MspR9I	CCNGG	1 cut(s)	6
MvaI	CCWGG	1 cut(s)	6
MwoI	GCNNNNNNNGC	2 cut(s)	97, 106
NlaIII	CATG	1 cut(s)	140
NlaIV	GGNNCC	1 cut(s)	92
PfeI	GAWTC	2 cut(s)	39, 63
PflMI	CCANNNNNTGG	1 cut(s)	73
PkrI	GCNGC	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	4
PspN4I	GGNNCC	1 cut(s)	92
PspPI	GGNCC	1 cut(s)	90
RseI	CAYNNNNRTG	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	1 cut(s)	115
Sau96I	GGNCC	1 cut(s)	90
ScrFI	CCNGG	1 cut(s)	6
SetI	ASST	2 cut(s)	150, 166
SfaNI	GCATC	1 cut(s)	205
SmiMI	CAYNNNNRTG	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	190
SmoI	CTYRAG	1 cut(s)	190
Sse9I	AATT	3 cut(s)	15, 47, 200
SsiI	CCGC	2 cut(s)	114, 195
StyD4I	CCNGG	1 cut(s)	4
TasI	AATT	3 cut(s)	15, 47, 200
TauI	GCSGC	1 cut(s)	117
TfiI	GAWTC	2 cut(s)	39, 63
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TspDTI	ATGAA	1 cut(s)	60
Van91I	CCANNNNNTGG	1 cut(s)	73
XapI	RAATTY	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.