Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

12741343 .. 12745022

Gene Structure 3680 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG150200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGGGATTTGCTGGAGTAACAAGATCAAGTCTGTAAGTCCTTCTAATACAGGATACAATGGTTCAAGCAGCAAGGCCTCATCGAGCTCCATGCCTATAACTCCTCGGAGTGAGGGGGAGATTTTGCAATCCTGCAATTTGAGCAGTATCAGCTTCAGTGAGCTCAAAAATGCTACAAGAAACTTCCGTCCCGATAGTGTACTAGGTGATGGCGGTTTTGGTTCCGTTTTCAAAGGTTGGATCGATGAAAGTACACTTATAGCTACCAAGGCTGGGTCTGGCATGGTAATTGCTGTGAAGAGACTCAACCAAGATGGTTTCCAGGGCCACAAGGAATGGTTGACAGAAATCAACTATCTTGGACAGCTACAGCATCCTAATCTTGTGAAATTGATTGGTTATTGCTTAGAGGATGAGCACCGGCTCCTGGTTTATGAGTTCATGCCTAAGGGCAGCATGGAAAATCATCTATTCAGGAGAAGTACTCACTTTCAGCCTCTTTCTTGGACCCTGCGAATGAAAATTGCCCTTGGTGCTGCAAAGGGACTTGCCTTTCTGCACAATGCTGAACAACAAGTCATACATCGTGACTTCAAGTCTGCCAACATTTTGCTTGACTCGGTAGGTAACTCATTGGCATATTTCAATCTGCATTTAACTCGAATTCAATATGGTTGGATCTGCCAAGTTTCAGGGTTCATTCAATCCTTGTTTTACTTTTGTTTCAGAACTACAATGCGAAGCTGGCTGATTTTGGGCTGGCGAGGGATGGACCAACTGGCGACAAAAGCCATGTCTCTACTAGGGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

270

Amino Acids

30.23

Weight (kDa)

9.32

Isoelectric Point (pI)

46.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	65 - 209	3e-23	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	66 - 207	1.2e-26	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	213
AclWI	GGATC	2 cut(s)	248, 686
AcsI	RAATTY	1 cut(s)	663
AcuI	CTGAAG	1 cut(s)	139
AfaI	GTAC	3 cut(s)	201, 253, 484
AfiI	CCNNNNNNNGG	2 cut(s)	273, 427
AgsI	TTSAA	6 cut(s)	66, 232, 595, 646, 668, 704
AhdI	GACNNNNNGTC	1 cut(s)	595
AjnI	CCWGG	2 cut(s)	321, 426
AluBI	AGCT	6 cut(s)	87, 153, 163, 263, 367, 744
AluI	AGCT	6 cut(s)	87, 153, 163, 263, 367, 744
Alw21I	GWGCWC	3 cut(s)	89, 165, 420
Alw26I	GTCTC	2 cut(s)	295, 801
AlwI	GGATC	2 cut(s)	248, 686
AoxI	GGCC	2 cut(s)	75, 325
ApeKI	GCWGC	3 cut(s)	69, 453, 536
ApoI	RAATTY	1 cut(s)	663
ArsI	GACNNNNNNTTYG	2 cut(s)	779, 811
AspS9I	GGNCC	3 cut(s)	325, 507, 772
AsuHPI	GGTGA	1 cut(s)	218
AvaII	GGWCC	2 cut(s)	507, 772
AxyI	CCTNAGG	1 cut(s)	447
BaeI	ACNNNNGTAYC	2 cut(s)	46, 79
BanII	GRGCYC	2 cut(s)	89, 165
Bbv12I	GWGCWC	3 cut(s)	89, 165, 420
BbvI	GCAGC	3 cut(s)	81, 465, 523
BccI	CCATC	3 cut(s)	203, 308, 763
BcgI	CGANNNNNNTGC	4 cut(s)	73, 107, 641, 675
BciT130I	CCWGG	2 cut(s)	323, 428
BciVI	GTATCC	1 cut(s)	47
BcoDI	GTCTC	2 cut(s)	295, 801
BfaI	CTAG	2 cut(s)	203, 803
BfmI	CTRYAG	1 cut(s)	368
BfuI	GTATCC	1 cut(s)	47
BisI	GCNGC	3 cut(s)	70, 454, 537
BlsI	GCNGC	3 cut(s)	71, 455, 538
BmcAI	AGTACT	1 cut(s)	484
Bme1390I	CCNGG	2 cut(s)	323, 428
Bme18I	GGWCC	2 cut(s)	507, 772
BmeRI	GACNNNNNGTC	1 cut(s)	595
BmgT120I	GGNCC	3 cut(s)	325, 507, 772
BmiI	GGNNCC	3 cut(s)	223, 425, 509
BmrFI	CCNGG	2 cut(s)	323, 428
BmsI	GCATC	1 cut(s)	382
BplI	GAGNNNNNCTC	2 cut(s)	469, 501
BpmI	CTGGAG	1 cut(s)	34
Bsa29I	ATCGAT	1 cut(s)	243
BsaJI	CCNNGG	4 cut(s)	104, 267, 322, 529
Bsc4I	CCNNNNNNNGG	2 cut(s)	273, 427
Bse118I	RCCGGY	1 cut(s)	420
Bse1I	ACTGG	1 cut(s)	783
Bse21I	CCTNAGG	1 cut(s)	447
BseBI	CCWGG	2 cut(s)	323, 428
BseCI	ATCGAT	1 cut(s)	243
BseDI	CCNNGG	4 cut(s)	104, 267, 322, 529
BseGI	GGATG	3 cut(s)	373, 418, 774
BseLI	CCNNNNNNNGG	2 cut(s)	273, 427
BseNI	ACTGG	1 cut(s)	783
BseRI	GAGGAG	1 cut(s)	93
BseXI	GCAGC	3 cut(s)	81, 465, 523
BseYI	CCCAGC	1 cut(s)	272
BsgI	GTGCAG	1 cut(s)	542
BshFI	GGCC	2 cut(s)	77, 327
BshVI	ATCGAT	1 cut(s)	243
BsiHKAI	GWGCWC	3 cut(s)	89, 165, 420
BsiSI	CCGG	1 cut(s)	421
BslFI	GGGAC	2 cut(s)	174, 558
BslI	CCNNNNNNNGG	2 cut(s)	273, 427
BsmAI	GTCTC	2 cut(s)	295, 801
BsmFI	GGGAC	2 cut(s)	174, 558
BsnI	GGCC	2 cut(s)	77, 327
Bsp1286I	GDGCHC	3 cut(s)	89, 165, 420
Bsp143I	GATC	3 cut(s)	24, 240, 678
BspACI	CCGC	1 cut(s)	213
BspANI	GGCC	2 cut(s)	77, 327
BspDI	ATCGAT	1 cut(s)	243
BspLI	GGNNCC	3 cut(s)	223, 425, 509
BspPI	GGATC	2 cut(s)	248, 686
BsrFI	RCCGGY	1 cut(s)	420
BsrI	ACTGG	1 cut(s)	783
BssAI	RCCGGY	1 cut(s)	420
BssECI	CCNNGG	4 cut(s)	104, 267, 322, 529
BssMI	GATC	3 cut(s)	24, 240, 678
BssT1I	CCWWGG	2 cut(s)	267, 529
Bst2UI	CCWGG	2 cut(s)	323, 428
Bst6I	CTCTTC	1 cut(s)	293
BstC8I	GCNNGC	2 cut(s)	746, 761
BstDEI	CTNAG	2 cut(s)	406, 447
BstF5I	GGATG	3 cut(s)	373, 418, 774
BstKTI	GATC	3 cut(s)	27, 243, 681
BstMAI	GTCTC	2 cut(s)	295, 801
BstMBI	GATC	3 cut(s)	24, 240, 678
BstMWI	GCNNNNNNNGC	6 cut(s)	141, 150, 269, 533, 745, 788
BstNI	CCWGG	2 cut(s)	323, 428
BstSCI	CCNGG	2 cut(s)	321, 426
BstSFI	CTRYAG	1 cut(s)	368
BstV1I	GCAGC	3 cut(s)	81, 465, 523
BstX2I	RGATCY	1 cut(s)	678
BstYI	RGATCY	1 cut(s)	678
Bsu15I	ATCGAT	1 cut(s)	243
Bsu36I	CCTNAGG	1 cut(s)	447
BsuI	GTATCC	1 cut(s)	47
BsuRI	GGCC	2 cut(s)	77, 327
BsuTUI	ATCGAT	1 cut(s)	243
BtsCI	GGATG	3 cut(s)	373, 418, 774
BtsIMutI	CAGTG	1 cut(s)	163
Cac8I	GCNNGC	2 cut(s)	746, 761
Cfr10I	RCCGGY	1 cut(s)	420
Cfr13I	GGNCC	3 cut(s)	325, 507, 772
ClaI	ATCGAT	1 cut(s)	243
Csp6I	GTAC	3 cut(s)	200, 252, 483
CviAII	CATG	5 cut(s)	91, 283, 442, 457, 793
CviQI	GTAC	3 cut(s)	200, 252, 483
DdeI	CTNAG	2 cut(s)	406, 447
DpnI	GATC	3 cut(s)	26, 242, 680
DpnII	GATC	3 cut(s)	24, 240, 678
DriI	GACNNNNNGTC	1 cut(s)	595
Eam1104I	CTCTTC	1 cut(s)	293
Eam1105I	GACNNNNNGTC	1 cut(s)	595
EarI	CTCTTC	1 cut(s)	293
Ecl136II	GAGCTC	2 cut(s)	87, 163
Eco130I	CCWWGG	2 cut(s)	267, 529
Eco147I	AGGCCT	1 cut(s)	77
Eco24I	GRGCYC	2 cut(s)	89, 165
Eco47I	GGWCC	2 cut(s)	507, 772
Eco53kI	GAGCTC	2 cut(s)	87, 163
Eco57I	CTGAAG	1 cut(s)	139
Eco81I	CCTNAGG	1 cut(s)	447
EcoICRI	GAGCTC	2 cut(s)	87, 163
EcoRI	GAATTC	1 cut(s)	663
EcoRII	CCWGG	2 cut(s)	321, 426
EcoT14I	CCWWGG	2 cut(s)	267, 529
EcoT38I	GRGCYC	2 cut(s)	89, 165
ErhI	CCWWGG	2 cut(s)	267, 529
FaeI	CATG	5 cut(s)	94, 286, 445, 460, 796
FaqI	GGGAC	2 cut(s)	174, 558
FatI	CATG	5 cut(s)	90, 282, 441, 456, 792
Fnu4HI	GCNGC	3 cut(s)	70, 454, 537
FokI	GGATG	3 cut(s)	360, 425, 781
FriOI	GRGCYC	2 cut(s)	89, 165
Fsp4HI	GCNGC	3 cut(s)	70, 454, 537
FspBI	CTAG	2 cut(s)	203, 803
GluI	GCNGC	3 cut(s)	70, 454, 537
GsaI	CCCAGC	1 cut(s)	276
GsuI	CTGGAG	1 cut(s)	34
HaeIII	GGCC	2 cut(s)	77, 327
HapII	CCGG	1 cut(s)	421
Hin1II	CATG	5 cut(s)	94, 286, 445, 460, 796
HincII	GTYRAC	1 cut(s)	342
HindII	GTYRAC	1 cut(s)	342
HinfI	GANTC	2 cut(s)	303, 617
HpaII	CCGG	1 cut(s)	421
HphI	GGTGA	1 cut(s)	218
Hpy166II	GTNNAC	3 cut(s)	200, 254, 342
Hpy188I	TCNGA	2 cut(s)	108, 728
Hpy188III	TCNNGA	3 cut(s)	191, 475, 587
Hpy8I	GTNNAC	3 cut(s)	200, 254, 342
HpyAV	CCTTC	1 cut(s)	51
HpyCH4V	TGCA	5 cut(s)	127, 135, 539, 559, 652
HpyF10VI	GCNNNNNNNGC	6 cut(s)	141, 150, 269, 533, 745, 788
HpyF3I	CTNAG	2 cut(s)	406, 447
Hsp92II	CATG	5 cut(s)	94, 286, 445, 460, 796
Kzo9I	GATC	3 cut(s)	24, 240, 678
LmnI	GCTCC	2 cut(s)	92, 429
Lsp1109I	GCAGC	3 cut(s)	81, 465, 523
LweI	GCATC	1 cut(s)	382
MaeI	CTAG	2 cut(s)	203, 803
MaeIII	GTNAC	3 cut(s)	17, 587, 626
MalI	GATC	3 cut(s)	26, 242, 680
MboI	GATC	3 cut(s)	24, 240, 678
MboII	GAAGA	1 cut(s)	310
MflI	RGATCY	1 cut(s)	678
MhlI	GDGCHC	3 cut(s)	89, 165, 420
MluCI	AATT	5 cut(s)	136, 288, 389, 522, 663
MlyI	GAGTC	2 cut(s)	297, 611
MmeI	TCCRAC	2 cut(s)	218, 656
MnlI	CCTC	6 cut(s)	88, 106, 114, 403, 507, 758
MseI	TTAA	1 cut(s)	656
MspI	CCGG	1 cut(s)	421
MspR9I	CCNGG	2 cut(s)	323, 428
MvaI	CCWGG	2 cut(s)	323, 428
MwoI	GCNNNNNNNGC	6 cut(s)	141, 150, 269, 533, 745, 788
NdeII	GATC	3 cut(s)	24, 240, 678
NlaIII	CATG	5 cut(s)	94, 286, 445, 460, 796
NlaIV	GGNNCC	3 cut(s)	223, 425, 509
NmuCI	GTSAC	1 cut(s)	587
PceI	AGGCCT	1 cut(s)	77
PkrI	GCNGC	3 cut(s)	71, 455, 538
PleI	GAGTC	2 cut(s)	297, 611
PpsI	GAGTC	2 cut(s)	297, 611
Psp124BI	GAGCTC	2 cut(s)	89, 165
Psp6I	CCWGG	2 cut(s)	321, 426
PspFI	CCCAGC	1 cut(s)	272
PspGI	CCWGG	2 cut(s)	321, 426
PspN4I	GGNNCC	3 cut(s)	223, 425, 509
PspPI	GGNCC	3 cut(s)	325, 507, 772
PsuI	RGATCY	1 cut(s)	678
RsaI	GTAC	3 cut(s)	201, 253, 484
RsaNI	GTAC	3 cut(s)	200, 252, 483
SacI	GAGCTC	2 cut(s)	89, 165
SaqAI	TTAA	1 cut(s)	656
SatI	GCNGC	3 cut(s)	70, 454, 537
Sau3AI	GATC	3 cut(s)	24, 240, 678
Sau96I	GGNCC	3 cut(s)	325, 507, 772
ScaI	AGTACT	1 cut(s)	484
SchI	GAGTC	2 cut(s)	297, 611
ScrFI	CCNGG	2 cut(s)	323, 428
SduI	GDGCHC	3 cut(s)	89, 165, 420
SetI	ASST	9 cut(s)	89, 155, 165, 208, 238, 265, 369, 628, 746
SfaNI	GCATC	1 cut(s)	382
SfcI	CTRYAG	1 cut(s)	368
SinI	GGWCC	2 cut(s)	507, 772
Sse9I	AATT	5 cut(s)	136, 288, 389, 522, 663
SseBI	AGGCCT	1 cut(s)	77
SsiI	CCGC	1 cut(s)	213
SspMI	CTAG	2 cut(s)	203, 803
SstI	GAGCTC	2 cut(s)	89, 165
StuI	AGGCCT	1 cut(s)	77
StyD4I	CCNGG	2 cut(s)	321, 426
StyI	CCWWGG	2 cut(s)	267, 529
TaqI	TCGA	3 cut(s)	83, 243, 661
TasI	AATT	5 cut(s)	136, 288, 389, 522, 663
TatI	WGTACW	3 cut(s)	199, 251, 482
Tru1I	TTAA	1 cut(s)	656
Tru9I	TTAA	1 cut(s)	656
TscAI	CASTG	1 cut(s)	163
TseFI	GTSAC	1 cut(s)	587
TseI	GCWGC	3 cut(s)	69, 453, 536
Tsp45I	GTSAC	1 cut(s)	587
TspDTI	ATGAA	4 cut(s)	261, 430, 533, 688
TspGWI	ACGGA	2 cut(s)	176, 214
TspRI	CASTG	1 cut(s)	163
VpaK11BI	GGWCC	2 cut(s)	507, 772
XapI	RAATTY	1 cut(s)	663
XspI	CTAG	2 cut(s)	203, 803
ZrmI	AGTACT	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.