Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

14072494 .. 14075567

Gene Structure 3074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG163300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGTTAAGTCTGCTTCACCACCCTAACCTTGTTAATCTTCTCGGTTATTGTGCTGATGGAGATCAAAGGCTCCTTGTTTATGAGTACATGCCCTTAGGATCTTTGGAGGATCATTTACATGGTATATGTTGCATTAGCTTCACATGCCTTGTTCTCTTTGATATTCAGATAGTAAGATATTTCAGGGACATTAGTTTAATCAGCTTTTCTGCAGATATGTCGCCTGGTAAGAGAAGACTTGATTGGAATACAAGAATGAAGATAGCTGCTGGGTCTGCAAAGGGACTAGAGTATTTACATGACAAAGCAAGTCCTCCTGTGATATACAGAGATTTGAAATGCTCCAACATATTGCTTAATGAAGGGTATCATCCCAAACTGTCTGATTTTGGCTTAGCCAAACTTGGGCCTGTTGGGGACAACACCCACGTTTCTACAAGGGTTATGGGAACCTACGGATATTGTGCTCCAGAGTATGCAATGACAGGCCAATTGACTCTTAAATCAGATGTTTATAGCTTTGGGGTAGTACTTTTGGAAATCATTACTGGCAGAAAGGCAATTGACAATTCTAGAGCTACAGGAGAGCAGAACTTGGTTGCATGGGCGAGACCTTTGTTCAAGGACCGGAAAAAATTTTCACAAATGGCAGACCCATCGTTACAAGGTCAGTATCCCGCAAGAGGATTATACCAAGCTCTGGCTGTTGCGGCAATGTGTGTTCAGGAGCAGCCTAATATGCGGCCGGTTATAGCTGATGTTGTCACAGCTTTGACATACCTTGCTGCACAAAAGTATGATCCTGAAACACAGCCTCCCCAAAGCTCCCGTCTTGCCCCTTGTACTCCCCCTAGAACCAAGCGGGACAGCGAAAGGAAAGCTCAATGGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1900457 GO:1900459 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

297

Amino Acids

33.25

Weight (kDa)

8.69

Isoelectric Point (pI)

36.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 257	3.2e-35	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	2 - 255	7.2e-30	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	700
AciI	CCGC	4 cut(s)	678, 710, 742, 862
AclWI	GGATC	3 cut(s)	106, 117, 794
AcoI	YGGCCR	1 cut(s)	743
AcsI	RAATTY	1 cut(s)	635
AfaI	GTAC	3 cut(s)	86, 531, 844
AfiI	CCNNNNNNNGG	3 cut(s)	405, 683, 700
AgsI	TTSAA	2 cut(s)	337, 622
AjnI	CCWGG	1 cut(s)	223
AjuI	GAANNNNNNNTTGG	2 cut(s)	226, 258
Alw21I	GWGCWC	1 cut(s)	469
Alw26I	GTCTC	1 cut(s)	604
AlwI	GGATC	3 cut(s)	106, 117, 794
AoxI	GGCC	3 cut(s)	407, 487, 743
ApeKI	GCWGC	3 cut(s)	266, 730, 785
ApoI	RAATTY	1 cut(s)	635
ArsI	GACNNNNNNTTYG	2 cut(s)	814, 846
AspS9I	GGNCC	2 cut(s)	407, 625
AsuHPI	GGTGA	1 cut(s)	8
AvaII	GGWCC	1 cut(s)	625
AxyI	CCTNAGG	1 cut(s)	94
BbsI	GAAGAC	1 cut(s)	241
Bbv12I	GWGCWC	1 cut(s)	469
BbvI	GCAGC	3 cut(s)	253, 742, 772
BccI	CCATC	2 cut(s)	50, 664
BcgI	CGANNNNNNTGC	4 cut(s)	201, 235, 639, 673
BciT130I	CCWGG	1 cut(s)	225
BciVI	GTATCC	1 cut(s)	684
BcoDI	GTCTC	1 cut(s)	604
BfaI	CTAG	3 cut(s)	287, 573, 852
BfmI	CTRYAG	2 cut(s)	210, 579
BfuI	GTATCC	1 cut(s)	684
BisI	GCNGC	5 cut(s)	267, 711, 731, 743, 786
BlpI	GCTNAGC	1 cut(s)	394
BlsI	GCNGC	5 cut(s)	268, 712, 732, 744, 787
BmcAI	AGTACT	1 cut(s)	531
Bme1390I	CCNGG	1 cut(s)	225
Bme18I	GGWCC	1 cut(s)	625
BmgT120I	GGNCC	2 cut(s)	407, 625
BmiI	GGNNCC	2 cut(s)	71, 451
BmrFI	CCNGG	1 cut(s)	225
BpiI	GAAGAC	1 cut(s)	241
BpmI	CTGGAG	1 cut(s)	453
Bpu1102I	GCTNAGC	1 cut(s)	394
BsaBI	GATNNNNATC	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	604
BsaWI	WCCGGW	1 cut(s)	627
BsaXI	ACNNNNNCTCC	2 cut(s)	799, 829
Bsc4I	CCNNNNNNNGG	3 cut(s)	405, 683, 700
Bse118I	RCCGGY	1 cut(s)	745
Bse1I	ACTGG	1 cut(s)	553
Bse21I	CCTNAGG	1 cut(s)	94
Bse3DI	GCAATG	2 cut(s)	486, 720
Bse8I	GATNNNNATC	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	225
BseGI	GGATG	1 cut(s)	370
BseJI	GATNNNNATC	1 cut(s)	60
BseLI	CCNNNNNNNGG	3 cut(s)	405, 683, 700
BseMI	GCAATG	2 cut(s)	486, 720
BseNI	ACTGG	1 cut(s)	553
BseX3I	CGGCCG	1 cut(s)	743
BseXI	GCAGC	3 cut(s)	253, 742, 772
BseYI	CCCAGC	1 cut(s)	269
BsgI	GTGCAG	1 cut(s)	771
Bsh1285I	CGRYCG	1 cut(s)	746
BshFI	GGCC	3 cut(s)	409, 489, 745
BsiEI	CGRYCG	1 cut(s)	746
BsiHKAI	GWGCWC	1 cut(s)	469
BsiSI	CCGG	2 cut(s)	628, 746
BslFI	GGGAC	4 cut(s)	200, 297, 431, 878
BslI	CCNNNNNNNGG	3 cut(s)	405, 683, 700
BsmAI	GTCTC	1 cut(s)	604
BsmFI	GGGAC	4 cut(s)	200, 297, 431, 878
BsnI	GGCC	3 cut(s)	409, 489, 745
Bso31I	GGTCTC	1 cut(s)	604
Bsp1286I	GDGCHC	1 cut(s)	469
Bsp143I	GATC	4 cut(s)	61, 98, 109, 799
Bsp1720I	GCTNAGC	1 cut(s)	394
BspACI	CCGC	4 cut(s)	678, 710, 742, 862
BspANI	GGCC	3 cut(s)	409, 489, 745
BspLI	GGNNCC	2 cut(s)	71, 451
BspMAI	CTGCAG	1 cut(s)	214
BspPI	GGATC	3 cut(s)	106, 117, 794
BspTNI	GGTCTC	1 cut(s)	604
BsrDI	GCAATG	2 cut(s)	486, 720
BsrFI	RCCGGY	1 cut(s)	745
BsrI	ACTGG	1 cut(s)	553
BssAI	RCCGGY	1 cut(s)	745
BssMI	GATC	4 cut(s)	61, 98, 109, 799
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	381
BstDEI	CTNAG	2 cut(s)	94, 394
BstF5I	GGATG	1 cut(s)	370
BstKTI	GATC	4 cut(s)	64, 101, 112, 802
BstMAI	GTCTC	1 cut(s)	604
BstMBI	GATC	4 cut(s)	61, 98, 109, 799
BstMCI	CGRYCG	1 cut(s)	746
BstMWI	GCNNNNNNNGC	4 cut(s)	144, 275, 710, 739
BstNI	CCWGG	1 cut(s)	225
BstNSI	RCATGY	2 cut(s)	91, 147
BstSCI	CCNGG	1 cut(s)	223
BstSFI	CTRYAG	2 cut(s)	210, 579
BstV1I	GCAGC	3 cut(s)	253, 742, 772
BstV2I	GAAGAC	1 cut(s)	241
BstX2I	RGATCY	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	98
BstZI	CGGCCG	1 cut(s)	743
Bsu36I	CCTNAGG	1 cut(s)	94
BsuI	GTATCC	1 cut(s)	684
BsuRI	GGCC	3 cut(s)	409, 489, 745
BtsCI	GGATG	1 cut(s)	370
Cfr10I	RCCGGY	1 cut(s)	745
Cfr13I	GGNCC	2 cut(s)	407, 625
Csp6I	GTAC	3 cut(s)	85, 530, 843
CviAII	CATG	5 cut(s)	88, 119, 144, 299, 603
CviQI	GTAC	3 cut(s)	85, 530, 843
DdeI	CTNAG	2 cut(s)	94, 394
DpnI	GATC	4 cut(s)	63, 100, 111, 801
DpnII	GATC	4 cut(s)	61, 98, 109, 799
EaeI	YGGCCR	1 cut(s)	743
EagI	CGGCCG	1 cut(s)	743
EclXI	CGGCCG	1 cut(s)	743
Eco31I	GGTCTC	1 cut(s)	604
Eco47I	GGWCC	1 cut(s)	625
Eco52I	CGGCCG	1 cut(s)	743
Eco81I	CCTNAGG	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	223
FaeI	CATG	5 cut(s)	91, 122, 147, 302, 606
FaqI	GGGAC	4 cut(s)	200, 297, 431, 878
FatI	CATG	5 cut(s)	87, 118, 143, 298, 602
FauI	CCCGC	2 cut(s)	685, 855
Fnu4HI	GCNGC	5 cut(s)	267, 711, 731, 743, 786
FokI	GGATG	1 cut(s)	357
Fsp4HI	GCNGC	5 cut(s)	267, 711, 731, 743, 786
FspBI	CTAG	3 cut(s)	287, 573, 852
GluI	GCNGC	5 cut(s)	267, 711, 731, 743, 786
GsaI	CCCAGC	1 cut(s)	273
GsuI	CTGGAG	1 cut(s)	453
HaeIII	GGCC	3 cut(s)	409, 489, 745
HapII	CCGG	2 cut(s)	628, 746
Hin1II	CATG	5 cut(s)	91, 122, 147, 302, 606
HinfI	GANTC	1 cut(s)	496
HpaII	CCGG	2 cut(s)	628, 746
HphI	GGTGA	1 cut(s)	8
Hpy188I	TCNGA	3 cut(s)	168, 385, 508
Hpy188III	TCNNGA	4 cut(s)	470, 573, 725, 803
HpyAV	CCTTC	1 cut(s)	356
HpyCH4III	ACNGT	1 cut(s)	381
HpyCH4IV	ACGT	1 cut(s)	429
HpyCH4V	TGCA	6 cut(s)	132, 212, 278, 479, 602, 788
HpyF10VI	GCNNNNNNNGC	4 cut(s)	144, 275, 710, 739
HpyF3I	CTNAG	2 cut(s)	94, 394
HpySE526I	ACGT	1 cut(s)	429
Hsp92II	CATG	5 cut(s)	91, 122, 147, 302, 606
Kzo9I	GATC	4 cut(s)	61, 98, 109, 799
LmnI	GCTCC	5 cut(s)	75, 347, 472, 727, 830
Lsp1109I	GCAGC	3 cut(s)	253, 742, 772
MaeI	CTAG	3 cut(s)	287, 573, 852
MaeII	ACGT	1 cut(s)	429
MaeIII	GTNAC	2 cut(s)	660, 763
MalI	GATC	4 cut(s)	63, 100, 111, 801
MboI	GATC	4 cut(s)	61, 98, 109, 799
MboII	GAAGA	3 cut(s)	29, 246, 271
MfeI	CAATTG	2 cut(s)	491, 561
MflI	RGATCY	1 cut(s)	98
MhlI	GDGCHC	1 cut(s)	469
MluCI	AATT	4 cut(s)	491, 561, 568, 635
MlyI	GAGTC	1 cut(s)	490
MmeI	TCCRAC	1 cut(s)	369
MnlI	CCTC	4 cut(s)	100, 324, 677, 825
MseI	TTAA	5 cut(s)	5, 33, 197, 357, 501
MslI	CAYNNNNRTG	1 cut(s)	117
MspI	CCGG	2 cut(s)	628, 746
MspR9I	CCNGG	1 cut(s)	225
MunI	CAATTG	2 cut(s)	491, 561
MvaI	CCWGG	1 cut(s)	225
MwoI	GCNNNNNNNGC	4 cut(s)	144, 275, 710, 739
NdeII	GATC	4 cut(s)	61, 98, 109, 799
NlaIII	CATG	5 cut(s)	91, 122, 147, 302, 606
NlaIV	GGNNCC	2 cut(s)	71, 451
NmuCI	GTSAC	1 cut(s)	763
NspI	RCATGY	2 cut(s)	91, 147
PflMI	CCANNNNNTGG	1 cut(s)	700
PkrI	GCNGC	5 cut(s)	268, 712, 732, 744, 787
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
Psp6I	CCWGG	1 cut(s)	223
PspFI	CCCAGC	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	2 cut(s)	71, 451
PspPI	GGNCC	2 cut(s)	407, 625
PstI	CTGCAG	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	98
RsaI	GTAC	3 cut(s)	86, 531, 844
RsaNI	GTAC	3 cut(s)	85, 530, 843
RseI	CAYNNNNRTG	1 cut(s)	117
SaqAI	TTAA	5 cut(s)	5, 33, 197, 357, 501
SatI	GCNGC	5 cut(s)	267, 711, 731, 743, 786
Sau3AI	GATC	4 cut(s)	61, 98, 109, 799
Sau96I	GGNCC	2 cut(s)	407, 625
ScaI	AGTACT	1 cut(s)	531
SchI	GAGTC	1 cut(s)	490
ScrFI	CCNGG	1 cut(s)	225
SduI	GDGCHC	1 cut(s)	469
SfcI	CTRYAG	2 cut(s)	210, 579
SinI	GGWCC	1 cut(s)	625
SmiMI	CAYNNNNRTG	1 cut(s)	117
Sse9I	AATT	4 cut(s)	491, 561, 568, 635
SsiI	CCGC	4 cut(s)	678, 710, 742, 862
SspMI	CTAG	3 cut(s)	287, 573, 852
StyD4I	CCNGG	1 cut(s)	223
TaaI	ACNGT	1 cut(s)	381
TaiI	ACGT	1 cut(s)	432
TasI	AATT	4 cut(s)	491, 561, 568, 635
TatI	WGTACW	3 cut(s)	84, 529, 842
TauI	GCSGC	2 cut(s)	713, 745
Tru1I	TTAA	5 cut(s)	5, 33, 197, 357, 501
Tru9I	TTAA	5 cut(s)	5, 33, 197, 357, 501
TseFI	GTSAC	1 cut(s)	763
TseI	GCWGC	3 cut(s)	266, 730, 785
Tsp45I	GTSAC	1 cut(s)	763
TspDTI	ATGAA	2 cut(s)	272, 375
TspGWI	ACGGA	1 cut(s)	471
Van91I	CCANNNNNTGG	1 cut(s)	700
VpaK11BI	GGWCC	1 cut(s)	625
XapI	RAATTY	1 cut(s)	635
XbaI	TCTAGA	1 cut(s)	572
XceI	RCATGY	2 cut(s)	91, 147
XspI	CTAG	3 cut(s)	287, 573, 852
ZrmI	AGTACT	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.