Rh3BG172000

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
N/A
Physical Location & Seq
Reverse (-)
14695994 .. 14697719
1726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG172000.1

Sequence Viewer

Length: 687 bp
ATGAACCCAACTGCCAACTCAGTCAAATCTCCACCGCCTTCTTTGCCTCCAACTGGGTCGGCTTCAGCTTCTAGTACCAGTACTACACAGAAGAACAGTAAGTCTTCTTGCCATAACCAGCTTTGCAAGCAAGGTCCGGGAGCTGTTGCTGGTGTGGTCACAGCTGGGGCTTTCGTTTTGGCTCTGTTTGCCGGTGTTTTTGTTTGGGTTTACAACAAGAAGATTAGACATGTTAAGAAATCAGAGTCTAGTTTTGCTTCGGATGTGATTAAAATGCCCAAGGAGTTTAGTTATAGGGAGCTCAAGGCAGCTACGAAGTGCTTCAATGCGAATCGGGTTATTGGGCATGGTGCATTTGGGATTGTTTATAAGGGGATATTATCAGAGACGGGTGACATTGTTGCAGTGAAGAGATGTAGTCATAGTTCTCAGGGGAAGAACGAGTTTTTGTCCGAGTTGTCTATTATCGGAACTCTTAGGCATCGAAATCTTGTTAGGCTTCAAGATTCATTTCATTTGATTCTGTATGTATCACACAATAACATCCGAGACGATGGCCATAAAGAAATGGGTGGGGGTCATTTTCTTTCTTTGATTGGTGGGAGATGGAATCGTGGGCAACTGGTTTCTTTCACAAGCAATCTCAGTTCTCAAAAGCAGACATGTGGGTGTAACGGCAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase S1FA

Protein Analysis

228

Amino Acids

24.6

Weight (kDa)

9.93

Isoelectric Point (pI)

42.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 109 - 172 2.5e-11 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 110 - 168 1e-08 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 369
AciI CCGC 1 cut(s) 35
AcoI YGGCCR 1 cut(s) 556
AcuI CTGAAG 1 cut(s) 48
AfaI GTAC 2 cut(s) 76, 82
AfiI CCNNNNNNNGG 1 cut(s) 53
AflIII ACRYGT 2 cut(s) 229, 662
AgsI TTSAA 2 cut(s) 325, 503
AluBI AGCT 6 cut(s) 68, 121, 143, 164, 301, 311
AluI AGCT 6 cut(s) 68, 121, 143, 164, 301, 311
Alw21I GWGCWC 1 cut(s) 303
Alw26I GTCTC 2 cut(s) 380, 543
AoxI GGCC 1 cut(s) 556
ApeKI GCWGC 1 cut(s) 308
Asp700I GAANNNNTTC 1 cut(s) 320
AspS9I GGNCC 1 cut(s) 134
AsuC2I CCSGG 1 cut(s) 138
AsuHPI GGTGA 1 cut(s) 404
AvaII GGWCC 1 cut(s) 134
BalI TGGCCA 1 cut(s) 558
BanII GRGCYC 1 cut(s) 303
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 303
BbvI GCAGC 1 cut(s) 320
BccI CCATC 2 cut(s) 548, 600
BcnI CCSGG 1 cut(s) 138
BcoDI GTCTC 2 cut(s) 380, 543
BfaI CTAG 2 cut(s) 72, 249
BisI GCNGC 1 cut(s) 309
BlsI GCNGC 1 cut(s) 310
BmcAI AGTACT 1 cut(s) 82
Bme1390I CCNGG 1 cut(s) 138
Bme18I GGWCC 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 134
BmrFI CCNGG 1 cut(s) 138
BmrI ACTGGG 1 cut(s) 63
BmsI GCATC 1 cut(s) 490
BmuI ACTGGG 1 cut(s) 63
BpiI GAAGAC 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 287
BpuMI CCSGG 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 279
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse118I RCCGGY 1 cut(s) 191
Bse1I ACTGG 3 cut(s) 58, 78, 627
BseDI CCNNGG 1 cut(s) 279
BseGI GGATG 2 cut(s) 268, 543
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMII CTCAG 3 cut(s) 33, 443, 658
BseNI ACTGG 3 cut(s) 58, 78, 627
BseXI GCAGC 1 cut(s) 320
BseYI CCCAGC 1 cut(s) 164
BshFI GGCC 1 cut(s) 558
BsiHKAI GWGCWC 1 cut(s) 303
BsiSI CCGG 2 cut(s) 137, 192
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 2 cut(s) 380, 543
BsmBI CGTCTC 2 cut(s) 380, 543
BsnI GGCC 1 cut(s) 558
Bsp1286I GDGCHC 1 cut(s) 303
BspACI CCGC 1 cut(s) 35
BspANI GGCC 1 cut(s) 558
BspCNI CTCAG 3 cut(s) 32, 442, 657
BsrFI RCCGGY 1 cut(s) 191
BsrI ACTGG 3 cut(s) 58, 78, 627
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 279
BssT1I CCWWGG 1 cut(s) 279
Bst4CI ACNGT 1 cut(s) 98
Bst6I CTCTTC 1 cut(s) 404
BstC8I GCNNGC 1 cut(s) 128
BstDEI CTNAG 4 cut(s) 19, 429, 476, 644
BstF5I GGATG 2 cut(s) 268, 543
BstMAI GTCTC 2 cut(s) 380, 543
BstMWI GCNNNNNNNGC 3 cut(s) 43, 127, 188
BstNSI RCATGY 2 cut(s) 233, 666
BstSCI CCNGG 1 cut(s) 136
BstV1I GCAGC 1 cut(s) 320
BstV2I GAAGAC 1 cut(s) 96
BsuRI GGCC 1 cut(s) 558
BtsCI GGATG 2 cut(s) 268, 543
BtsI GCAGTG 1 cut(s) 411
BtsIMutI CAGTG 1 cut(s) 411
Cac8I GCNNGC 1 cut(s) 128
Cfr10I RCCGGY 1 cut(s) 191
Cfr13I GGNCC 1 cut(s) 134
Csp6I GTAC 2 cut(s) 75, 81
CviAII CATG 3 cut(s) 230, 347, 663
CviQI GTAC 2 cut(s) 75, 81
DdeI CTNAG 4 cut(s) 19, 429, 476, 644
EaeI YGGCCR 1 cut(s) 556
Eam1104I CTCTTC 1 cut(s) 404
EarI CTCTTC 1 cut(s) 404
Ecl136II GAGCTC 1 cut(s) 301
Eco130I CCWWGG 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 303
Eco47I GGWCC 1 cut(s) 134
Eco53kI GAGCTC 1 cut(s) 301
Eco57I CTGAAG 1 cut(s) 48
EcoICRI GAGCTC 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 303
ErhI CCWWGG 1 cut(s) 279
Esp3I CGTCTC 2 cut(s) 380, 543
FaeI CATG 3 cut(s) 233, 350, 666
FaiI YATR 9 cut(s) 114, 231, 294, 348, 369, 423, 528, 561, 664
FatI CATG 3 cut(s) 229, 346, 662
Fnu4HI GCNGC 1 cut(s) 309
FokI GGATG 2 cut(s) 275, 530
FriOI GRGCYC 1 cut(s) 303
Fsp4HI GCNGC 1 cut(s) 309
FspBI CTAG 2 cut(s) 72, 249
GluI GCNGC 1 cut(s) 309
GsaI CCCAGC 1 cut(s) 168
HaeIII GGCC 1 cut(s) 558
HapII CCGG 2 cut(s) 137, 192
Hin1II CATG 3 cut(s) 233, 350, 666
HinfI GANTC 5 cut(s) 245, 331, 506, 520, 610
HpaII CCGG 2 cut(s) 137, 192
HphI GGTGA 1 cut(s) 404
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 6 cut(s) 244, 262, 385, 454, 470, 548
Hpy188III TCNNGA 1 cut(s) 503
Hpy8I GTNNAC 1 cut(s) 211
HpyAV CCTTC 1 cut(s) 48
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4V TGCA 3 cut(s) 126, 353, 404
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 127, 188
HpyF3I CTNAG 4 cut(s) 19, 429, 476, 644
Hsp92II CATG 3 cut(s) 233, 350, 666
LmnI GCTCC 2 cut(s) 140, 298
LpnPI CCDG 9 cut(s) 39, 91, 131, 135, 150, 150, 205, 416, 608
Lsp1109I GCAGC 1 cut(s) 320
LweI GCATC 1 cut(s) 490
MaeI CTAG 2 cut(s) 72, 249
MaeIII GTNAC 3 cut(s) 157, 392, 671
MboII GAAGA 5 cut(s) 96, 103, 232, 421, 448
MhlI GDGCHC 1 cut(s) 303
MlsI TGGCCA 1 cut(s) 558
MluNI TGGCCA 1 cut(s) 558
MlyI GAGTC 1 cut(s) 254
MmeI TCCRAC 1 cut(s) 74
MnlI CCTC 1 cut(s) 57
Mox20I TGGCCA 1 cut(s) 558
MroXI GAANNNNTTC 1 cut(s) 320
MscI TGGCCA 1 cut(s) 558
MseI TTAA 2 cut(s) 234, 270
MslI CAYNNNNRTG 1 cut(s) 667
Msp20I TGGCCA 1 cut(s) 558
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 2 cut(s) 137, 192
MspR9I CCNGG 1 cut(s) 138
MwoI GCNNNNNNNGC 3 cut(s) 43, 127, 188
NciI CCSGG 1 cut(s) 138
NlaIII CATG 3 cut(s) 233, 350, 666
NmuCI GTSAC 2 cut(s) 157, 392
NspI RCATGY 2 cut(s) 233, 666
PciI ACATGT 2 cut(s) 229, 662
PdmI GAANNNNTTC 1 cut(s) 320
PfeI GAWTC 4 cut(s) 331, 506, 520, 610
PfoI TCCNGGA 1 cut(s) 136
PkrI GCNGC 1 cut(s) 310
PleI GAGTC 1 cut(s) 253
PpsI GAGTC 1 cut(s) 253
PscI ACATGT 2 cut(s) 229, 662
PsiI TTATAA 1 cut(s) 369
Psp124BI GAGCTC 1 cut(s) 303
PspFI CCCAGC 1 cut(s) 164
PspPI GGNCC 1 cut(s) 134
PsrI GAACNNNNNNTAC 2 cut(s) 409, 441
PvuII CAGCTG 1 cut(s) 164
RsaI GTAC 2 cut(s) 76, 82
RsaNI GTAC 2 cut(s) 75, 81
RseI CAYNNNNRTG 1 cut(s) 667
SacI GAGCTC 1 cut(s) 303
SaqAI TTAA 2 cut(s) 234, 270
SatI GCNGC 1 cut(s) 309
Sau96I GGNCC 1 cut(s) 134
ScaI AGTACT 1 cut(s) 82
SchI GAGTC 1 cut(s) 254
ScrFI CCNGG 1 cut(s) 138
SduI GDGCHC 1 cut(s) 303
SetI ASST 7 cut(s) 70, 123, 136, 145, 166, 303, 313
SfaNI GCATC 1 cut(s) 490
SinI GGWCC 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 667
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
SsiI CCGC 1 cut(s) 35
SspMI CTAG 2 cut(s) 72, 249
SstI GAGCTC 1 cut(s) 303
StyD4I CCNGG 1 cut(s) 136
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 98
TaqI TCGA 1 cut(s) 484
TatI WGTACW 1 cut(s) 80
TfiI GAWTC 4 cut(s) 331, 506, 520, 610
Tru1I TTAA 2 cut(s) 234, 270
Tru9I TTAA 2 cut(s) 234, 270
TscAI CASTG 1 cut(s) 411
TseFI GTSAC 2 cut(s) 157, 392
TseI GCWGC 1 cut(s) 308
Tsp45I GTSAC 2 cut(s) 157, 392
TspDTI ATGAA 3 cut(s) 17, 498, 503
TspRI CASTG 1 cut(s) 411
VpaK11BI GGWCC 1 cut(s) 134
XceI RCATGY 2 cut(s) 233, 666
XmnI GAANNNNTTC 1 cut(s) 320
XspI CTAG 2 cut(s) 72, 249
ZrmI AGTACT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.