Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

22846634 .. 22850413

Gene Structure 3780 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG242500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGCTGCTGCTTGATGAGATTAGAGATCAATATCAGATGGGAAACAACTGTGTTGGAAATTCCAAGGACGGGCTTTTCCATTCGGTCTCAAATTCACTCTGGTGGACTCGATCAACCGGGGGTTTGGTTACTCCTACAACTAGAGAAATTAAAAGTAGTGATGCACCACCCTCATTGAACAATCAGTCAGAAACTAATCCTCATGATGTTCAAAGCAATCCCCCAGAAGCAATCAAGATGACCACGGAGGGCTCTAAACCAGTGCAGCCCCCAATTCAACCGACGAAGGTTCATCCCGAAAAGCAAAAGGAAGAGGAGACTGAACCAGCAGCACAAGCAGCAATTCCGAAGGGAGAGACTAAACCTCAACAACCGGTAAATCATAGGGATCAAGAGACCAGACCAGCGCAACCCATAACACAAAATGGAGGGACTAATCAGCAAGCAGTGCCTGCGAGACCGAAGAAGCCCCATAATGTGAAGAGGGTCATTGCTGAAAACCTCTCTGAAGAAGAAATTGCCGGTTTAAAAGAAATGTTCAAGATGATAGATACTGACAATAGTGGTCAAATTAGTTTCGAAGAACTGAAAGATGGACTGAAAAGATTTGGAGCTACTCTAAATGAGTCTGAAATATACGACCTGATGCAAGCTGCTGATGTTGACAACAGTGGCACAATTGATTATGGGGAGTTCATAGCAGCAACATTGCATTTAAACAAAGTAGAGAGGGAAGATCATTTGTTTGCAGCTTTCTCATATTTTGACAAAGATGGCAGTGGCTATATAACTCAAGATGAACTTCAACAAGCGTGTGAGGAGTTTGGCATTCAGGATGTCCACTTGGAAGAGTTGATCCGAGAAGTCGATCAGGACAATGACGGTCGAATAGATTACAATGAGTTCGTTGCCATGATGCAGAAAGGCAATCCAGAGTTTGATAAGAAGGGTATTCAAACCAGTGCTCTTGGCATTGGATTTAGGGAGGCACTATCTGTTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0031984 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042175 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0098827 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 Pkinase

Protein Analysis

334

Amino Acids

37.21

Weight (kDa)

4.73

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	176 - 202	4.8e-09	EF hand domain
EF-hand_7	PF13499	176 - 235	3.3e-13	EF-hand domain pair
EF-hand_6	PF13405	176 - 204	1.9e-07	EF-hand domain
EF-hand_5	PF13202	176 - 198	1.2e-06	EF hand
EF-hand_8	PF13833	189 - 236	4.5e-08	EF-hand domain pair
EF-hand_7	PF13499	245 - 307	8.7e-17	EF-hand domain pair
EF-hand_1	PF00036	249 - 274	1.7e-06	EF hand domain
EF-hand_6	PF13405	249 - 276	2.7e-07	EF-hand domain
EF-hand_1	PF00036	282 - 308	2e-08	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	396, 850
AcsI	RAATTY	2 cut(s)	58, 91
AcuI	CTGAAG	1 cut(s)	528
AfiI	CCNNNNNNNGG	1 cut(s)	69
AgeI	ACCGGT	1 cut(s)	373
AgsI	TTSAA	6 cut(s)	178, 212, 278, 541, 806, 956
AleI	CACNNNNGTG	1 cut(s)	100
AluBI	AGCT	3 cut(s)	614, 653, 752
AluI	AGCT	3 cut(s)	614, 653, 752
Alw21I	GWGCWC	1 cut(s)	967
Alw26I	GTCTC	5 cut(s)	91, 311, 350, 389, 451
AlwI	GGATC	2 cut(s)	396, 850
AlwNI	CAGNNNCTG	1 cut(s)	452
ApeKI	GCWGC	8 cut(s)	4, 7, 265, 329, 338, 653, 701, 749
ApoI	RAATTY	2 cut(s)	58, 91
AsiGI	ACCGGT	1 cut(s)	373
AspLEI	GCGC	1 cut(s)	409
AsuC2I	CCSGG	1 cut(s)	118
AsuII	TTCGAA	1 cut(s)	579
BanII	GRGCYC	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	967
BbvI	GCAGC	6 cut(s)	277, 341, 350, 640, 713, 761
BccI	CCATC	3 cut(s)	31, 587, 767
BcnI	CCSGG	1 cut(s)	118
BcoDI	GTCTC	5 cut(s)	91, 311, 350, 389, 451
BfaI	CTAG	1 cut(s)	141
BisI	GCNGC	8 cut(s)	5, 8, 266, 330, 339, 654, 702, 750
BlsI	GCNGC	8 cut(s)	6, 9, 267, 331, 340, 655, 703, 751
Bme1390I	CCNGG	1 cut(s)	118
BmrFI	CCNGG	1 cut(s)	118
BmsI	GCATC	3 cut(s)	151, 636, 906
Bpu14I	TTCGAA	1 cut(s)	579
BpuEI	CTTGAG	1 cut(s)	777
BpuMI	CCSGG	1 cut(s)	118
BsaBI	GATNNNNATC	1 cut(s)	30
BsaI	GGTCTC	3 cut(s)	91, 389, 451
BsaJI	CCNNGG	3 cut(s)	63, 117, 243
BsaWI	WCCGGW	1 cut(s)	373
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse118I	RCCGGY	2 cut(s)	373, 521
Bse1I	ACTGG	2 cut(s)	260, 960
Bse3DI	GCAATG	2 cut(s)	489, 707
Bse8I	GATNNNNATC	1 cut(s)	30
BseDI	CCNNGG	3 cut(s)	63, 117, 243
BseGI	GGATG	2 cut(s)	292, 841
BseJI	GATNNNNATC	1 cut(s)	30
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseMI	GCAATG	2 cut(s)	489, 707
BseNI	ACTGG	2 cut(s)	260, 960
BseRI	GAGGAG	2 cut(s)	329, 833
BseXI	GCAGC	6 cut(s)	277, 341, 350, 640, 713, 761
BsgI	GTGCAG	1 cut(s)	284
Bsh1285I	CGRYCG	1 cut(s)	886
BshTI	ACCGGT	1 cut(s)	373
BsiEI	CGRYCG	1 cut(s)	886
BsiHKAI	GWGCWC	1 cut(s)	967
BsiSI	CCGG	3 cut(s)	117, 374, 522
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmAI	GTCTC	5 cut(s)	91, 311, 350, 389, 451
BsmFI	GGGAC	1 cut(s)	445
BsmI	GAATGC	1 cut(s)	828
Bso31I	GGTCTC	3 cut(s)	91, 389, 451
Bsp119I	TTCGAA	1 cut(s)	579
Bsp1286I	GDGCHC	2 cut(s)	254, 967
Bsp143I	GATC	6 cut(s)	25, 110, 388, 736, 855, 868
BspHI	TCATGA	1 cut(s)	202
BspPI	GGATC	2 cut(s)	396, 850
BspT104I	TTCGAA	1 cut(s)	579
BspTNI	GGTCTC	3 cut(s)	91, 389, 451
BsrDI	GCAATG	2 cut(s)	489, 707
BsrFI	RCCGGY	2 cut(s)	373, 521
BsrI	ACTGG	2 cut(s)	260, 960
BssAI	RCCGGY	2 cut(s)	373, 521
BssECI	CCNNGG	3 cut(s)	63, 117, 243
BssMI	GATC	6 cut(s)	25, 110, 388, 736, 855, 868
BssT1I	CCWWGG	1 cut(s)	63
Bst4CI	ACNGT	3 cut(s)	50, 671, 884
Bst6I	CTCTTC	3 cut(s)	306, 476, 843
BstAPI	GCANNNNNTGC	2 cut(s)	448, 452
BstBI	TTCGAA	1 cut(s)	579
BstC8I	GCNNGC	3 cut(s)	444, 453, 651
BstDSI	CCRYGG	1 cut(s)	243
BstF5I	GGATG	2 cut(s)	292, 841
BstHHI	GCGC	1 cut(s)	409
BstKTI	GATC	6 cut(s)	28, 113, 391, 739, 858, 871
BstMAI	GTCTC	5 cut(s)	91, 311, 350, 389, 451
BstMBI	GATC	6 cut(s)	25, 110, 388, 736, 855, 868
BstMCI	CGRYCG	1 cut(s)	886
BstMWI	GCNNNNNNNGC	4 cut(s)	335, 338, 448, 452
BstSCI	CCNGG	1 cut(s)	116
BstV1I	GCAGC	6 cut(s)	277, 341, 350, 640, 713, 761
BtgI	CCRYGG	1 cut(s)	243
BtsCI	GGATG	2 cut(s)	292, 841
BtsI	GCAGTG	2 cut(s)	453, 784
BtsIMutI	CAGTG	5 cut(s)	267, 453, 676, 784, 967
Cac8I	GCNNGC	3 cut(s)	444, 453, 651
CaiI	CAGNNNCTG	1 cut(s)	452
CciI	TCATGA	1 cut(s)	202
CfoI	GCGC	1 cut(s)	409
Cfr10I	RCCGGY	2 cut(s)	373, 521
CspAI	ACCGGT	1 cut(s)	373
CspCI	CAANNNNNGTGG	2 cut(s)	156, 191
CviAII	CATG	2 cut(s)	203, 913
CviJI	RGCY	8 cut(s)	73, 252, 268, 469, 614, 653, 752, 783
CviKI_1	RGCY	8 cut(s)	73, 252, 268, 469, 614, 653, 752, 783
DpnI	GATC	6 cut(s)	27, 112, 390, 738, 857, 870
DpnII	GATC	6 cut(s)	25, 110, 388, 736, 855, 868
DraI	TTTAAA	2 cut(s)	528, 717
Eam1104I	CTCTTC	3 cut(s)	306, 476, 843
EarI	CTCTTC	3 cut(s)	306, 476, 843
Eco130I	CCWWGG	1 cut(s)	63
Eco24I	GRGCYC	1 cut(s)	254
Eco31I	GGTCTC	3 cut(s)	91, 389, 451
Eco57I	CTGAAG	1 cut(s)	528
EcoT14I	CCWWGG	1 cut(s)	63
EcoT38I	GRGCYC	1 cut(s)	254
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	2 cut(s)	206, 916
FalI	AAGNNNNNCTT	2 cut(s)	786, 818
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	2 cut(s)	202, 912
Fnu4HI	GCNGC	8 cut(s)	5, 8, 266, 330, 339, 654, 702, 750
FokI	GGATG	2 cut(s)	279, 848
FriOI	GRGCYC	1 cut(s)	254
Fsp4HI	GCNGC	8 cut(s)	5, 8, 266, 330, 339, 654, 702, 750
FspBI	CTAG	1 cut(s)	141
GlaI	GCGC	1 cut(s)	408
GluI	GCNGC	8 cut(s)	5, 8, 266, 330, 339, 654, 702, 750
HapII	CCGG	3 cut(s)	117, 374, 522
HhaI	GCGC	1 cut(s)	409
Hin1II	CATG	2 cut(s)	206, 916
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HincII	GTYRAC	1 cut(s)	664
HindII	GTYRAC	1 cut(s)	664
HinfI	GANTC	2 cut(s)	106, 626
HpaII	CCGG	3 cut(s)	117, 374, 522
Hpy166II	GTNNAC	3 cut(s)	105, 664, 841
Hpy188I	TCNGA	6 cut(s)	36, 190, 348, 508, 631, 860
Hpy188III	TCNNGA	9 cut(s)	203, 235, 296, 392, 541, 794, 833, 872, 932
Hpy8I	GTNNAC	3 cut(s)	105, 664, 841
Hpy99I	CGWCG	1 cut(s)	286
HpyAV	CCTTC	3 cut(s)	280, 343, 940
HpyCH4III	ACNGT	3 cut(s)	50, 671, 884
HpyCH4V	TGCA	6 cut(s)	164, 265, 649, 712, 749, 919
HpyF10VI	GCNNNNNNNGC	4 cut(s)	335, 338, 448, 452
Hsp92II	CATG	2 cut(s)	206, 916
HspAI	GCGC	1 cut(s)	407
Kzo9I	GATC	6 cut(s)	25, 110, 388, 736, 855, 868
LmnI	GCTCC	1 cut(s)	611
Lsp1109I	GCAGC	6 cut(s)	277, 341, 350, 640, 713, 761
LweI	GCATC	3 cut(s)	151, 636, 906
MaeI	CTAG	1 cut(s)	141
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	6 cut(s)	27, 112, 390, 738, 857, 870
MboI	GATC	6 cut(s)	25, 110, 388, 736, 855, 868
MboII	GAAGA	8 cut(s)	323, 475, 493, 521, 524, 593, 746, 860
MfeI	CAATTG	1 cut(s)	678
MhlI	GDGCHC	2 cut(s)	254, 967
MluCI	AATT	8 cut(s)	58, 91, 147, 273, 342, 516, 570, 678
MlyI	GAGTC	2 cut(s)	100, 635
MmeI	TCCRAC	1 cut(s)	34
MseI	TTAA	4 cut(s)	150, 527, 716, 1003
MslI	CAYNNNNRTG	1 cut(s)	100
MspI	CCGG	3 cut(s)	117, 374, 522
MspR9I	CCNGG	1 cut(s)	118
MunI	CAATTG	1 cut(s)	678
Mva1269I	GAATGC	1 cut(s)	828
MwoI	GCNNNNNNNGC	4 cut(s)	335, 338, 448, 452
NciI	CCSGG	1 cut(s)	118
NdeII	GATC	6 cut(s)	25, 110, 388, 736, 855, 868
NlaIII	CATG	2 cut(s)	206, 916
NspV	TTCGAA	1 cut(s)	579
OliI	CACNNNNGTG	1 cut(s)	100
PagI	TCATGA	1 cut(s)	202
PctI	GAATGC	1 cut(s)	828
PinAI	ACCGGT	1 cut(s)	373
PkrI	GCNGC	8 cut(s)	6, 9, 267, 331, 340, 655, 703, 751
PleI	GAGTC	2 cut(s)	100, 634
PpsI	GAGTC	2 cut(s)	100, 634
PstNI	CAGNNNCTG	1 cut(s)	452
RseI	CAYNNNNRTG	1 cut(s)	100
SaqAI	TTAA	4 cut(s)	150, 527, 716, 1003
SatI	GCNGC	8 cut(s)	5, 8, 266, 330, 339, 654, 702, 750
Sau3AI	GATC	6 cut(s)	25, 110, 388, 736, 855, 868
SchI	GAGTC	2 cut(s)	100, 635
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	2 cut(s)	254, 967
SetI	ASST	7 cut(s)	291, 367, 504, 616, 645, 655, 754
SfaNI	GCATC	3 cut(s)	151, 636, 906
SfuI	TTCGAA	1 cut(s)	579
SmiMI	CAYNNNNRTG	1 cut(s)	100
SmlI	CTYRAG	1 cut(s)	792
SmoI	CTYRAG	1 cut(s)	792
Sse9I	AATT	8 cut(s)	58, 91, 147, 273, 342, 516, 570, 678
SspMI	CTAG	1 cut(s)	141
StyD4I	CCNGG	1 cut(s)	116
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	3 cut(s)	50, 671, 884
TaqI	TCGA	4 cut(s)	109, 579, 867, 886
TaqII	GACCGA	2 cut(s)	73, 475
TasI	AATT	8 cut(s)	58, 91, 147, 273, 342, 516, 570, 678
Tru1I	TTAA	4 cut(s)	150, 527, 716, 1003
Tru9I	TTAA	4 cut(s)	150, 527, 716, 1003
TscAI	CASTG	5 cut(s)	267, 453, 676, 784, 967
TseI	GCWGC	8 cut(s)	4, 7, 265, 329, 338, 653, 701, 749
TspDTI	ATGAA	3 cut(s)	281, 685, 813
TspGWI	ACGGA	1 cut(s)	260
TspRI	CASTG	5 cut(s)	267, 453, 676, 784, 967
XapI	RAATTY	2 cut(s)	58, 91
XspI	CTAG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.