Rh3BG269000

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
N/A
Physical Location & Seq
Reverse (-)
26148777 .. 26150300
1524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG269000.1

Sequence Viewer

Length: 867 bp
ATGGCTCTGGTCACTGGTCATCCAGGCTCTGGGAAAACCACTTTGGCAAAAGCTTTTTGTCAAGATAAGAAAGTGAAAGACAAATTCAAGAGCATCATCTTTGTCGACGTTTCAAAAAGACCCAACACCGAGGTTGTACAGGAAATATGTGAAAAAAAGGGTACCCGAATACTTTCTTTCCAATCCGAAGAAATTGCACTTGACAGGCTGCAACAACTTCTGAATAACACAGGAGAAGATCCTGTGCTTTTGGTCCTGGATAACGTTTGGCCTGGAAACAGGACAGAATCCCTCCTGGCGAGCTTTAAGTTCAAAGAATCGGAAATGTCAAATTACAAGATTTTGGTGACATCAAGATATGTGTTGCCAGGATTTGATGTTGAGTACCACGTAGAAGAACTGAATGACAATGATGCAATGAGTCTTCTCTGTAATTCAGCTCACCTCACAAGATCTTCTTCTATTTCAGAAGATCTTCAGAGAAAGGTTGTGGAGTGCTGTAAGAGACTTCCACTGGCTATTGAAGTGGTCGGAAGATCACTTTTTGGCAAGGATATTGTGATCTGGAAAGATAGAGTAGAAGCATGGTCTAGCGGTTCTTCTGTCATTAAGTCTGAAGAACGTTTGCTTGTTTGCCTCCAAAGTAGTTTAGATGCCCTGGGTGAAGAAAATGCCATCATCAAGGAATGTTTCATGGACCTTGCTTCATTTCCTCAAGGCCGAAGGATTCCTGCTTCTGTCCTGATTGATATATGGACTGCCCTCATTGATATGTTGGCTAATCTTGTAATCACGAGGAATGAGAAGGGGGAGTTGGATGACTACTATGGTGAACACTTCGTTACCCAACATGATCTCCATCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

288

Amino Acids

32.44

Weight (kDa)

5.29

Isoelectric Point (pI)

45.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_22 PF13401 2 - 89 2.3e-08 AAA domain
AAA_16 PF13191 2 - 100 3.6e-06 AAA ATPase domain
NB-ARC PF00931 4 - 147 3.4e-15 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 161
AccB1I GGYRCC 1 cut(s) 161
AccB7I CCANNNNNTGG 1 cut(s) 29
AccI GTMKAC 1 cut(s) 105
AciI CCGC 1 cut(s) 594
AclI AACGTT 2 cut(s) 264, 622
AclWI GGATC 1 cut(s) 233
AcsI RAATTY 1 cut(s) 83
AcuI CTGAAG 2 cut(s) 461, 636
AfaI GTAC 3 cut(s) 138, 163, 386
AfiI CCNNNNNNNGG 1 cut(s) 29
AgsI TTSAA 4 cut(s) 88, 114, 313, 524
AjnI CCWGG 6 cut(s) 22, 255, 271, 294, 367, 657
AjuI GAANNNNNNNTTGG 4 cut(s) 26, 58, 797, 829
AluBI AGCT 3 cut(s) 53, 303, 440
AluI AGCT 3 cut(s) 53, 303, 440
Alw26I GTCTC 1 cut(s) 499
AlwI GGATC 1 cut(s) 233
AlwNI CAGNNNCTG 1 cut(s) 29
AoxI GGCC 2 cut(s) 269, 718
ApeKI GCWGC 1 cut(s) 208
ApoI RAATTY 1 cut(s) 83
Asp700I GAANNNNTTC 2 cut(s) 172, 474
Asp718I GGTACC 1 cut(s) 161
AspS9I GGNCC 2 cut(s) 253, 697
AsuHPI GGTGA 4 cut(s) 358, 434, 674, 842
AvaII GGWCC 2 cut(s) 253, 697
BanI GGYRCC 1 cut(s) 161
BauI CACGAG 1 cut(s) 793
BbsI GAAGAC 1 cut(s) 416
BbvI GCAGC 1 cut(s) 195
BccI CCATC 1 cut(s) 683
BcgI CGANNNNNNTGC 2 cut(s) 176, 210
BciT130I CCWGG 6 cut(s) 24, 257, 273, 296, 369, 659
BcoDI GTCTC 1 cut(s) 499
BfaI CTAG 1 cut(s) 591
BglII AGATCT 2 cut(s) 452, 472
BisI GCNGC 1 cut(s) 209
BlsI GCNGC 1 cut(s) 210
Bme1390I CCNGG 6 cut(s) 24, 257, 273, 296, 369, 659
Bme18I GGWCC 2 cut(s) 253, 697
BmgT120I GGNCC 2 cut(s) 253, 697
BmiI GGNNCC 1 cut(s) 163
BmrFI CCNGG 6 cut(s) 24, 257, 273, 296, 369, 659
BmsI GCATC 3 cut(s) 102, 403, 643
BpiI GAAGAC 1 cut(s) 416
BpuEI CTTGAG 1 cut(s) 699
BsaAI YACGTR 1 cut(s) 391
BsaBI GATNNNNATC 1 cut(s) 858
BsaJI CCNNGG 3 cut(s) 129, 657, 658
BsaXI ACNNNNNCTCC 1 cut(s) 840
Bsc4I CCNNNNNNNGG 1 cut(s) 29
Bse1I ACTGG 2 cut(s) 19, 519
Bse3DI GCAATG 1 cut(s) 423
Bse8I GATNNNNATC 1 cut(s) 858
BseBI CCWGG 6 cut(s) 24, 257, 273, 296, 369, 659
BseDI CCNNGG 3 cut(s) 129, 657, 658
BseGI GGATG 3 cut(s) 19, 823, 859
BseJI GATNNNNATC 1 cut(s) 858
BseLI CCNNNNNNNGG 1 cut(s) 29
BseMI GCAATG 1 cut(s) 423
BseNI ACTGG 2 cut(s) 19, 519
BseXI GCAGC 1 cut(s) 195
BshFI GGCC 2 cut(s) 271, 720
BshNI GGYRCC 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 29
BsmAI GTCTC 1 cut(s) 499
BsnI GGCC 2 cut(s) 271, 720
Bsp1407I TGTACA 1 cut(s) 136
Bsp143I GATC 6 cut(s) 238, 452, 472, 536, 561, 853
BspACI CCGC 1 cut(s) 594
BspANI GGCC 2 cut(s) 271, 720
BspLI GGNNCC 1 cut(s) 163
BspPI GGATC 1 cut(s) 233
BspT107I GGYRCC 1 cut(s) 161
BsrDI GCAATG 1 cut(s) 423
BsrGI TGTACA 1 cut(s) 136
BsrI ACTGG 2 cut(s) 19, 519
BssECI CCNNGG 3 cut(s) 129, 657, 658
BssMI GATC 6 cut(s) 238, 452, 472, 536, 561, 853
BssSI CACGAG 1 cut(s) 793
Bst2BI CACGAG 1 cut(s) 793
Bst2UI CCWGG 6 cut(s) 24, 257, 273, 296, 369, 659
BstAUI TGTACA 1 cut(s) 136
BstBAI YACGTR 1 cut(s) 391
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 1 cut(s) 864
BstF5I GGATG 3 cut(s) 19, 823, 859
BstKTI GATC 6 cut(s) 241, 455, 475, 539, 564, 856
BstMAI GTCTC 1 cut(s) 499
BstMBI GATC 6 cut(s) 238, 452, 472, 536, 561, 853
BstNI CCWGG 6 cut(s) 24, 257, 273, 296, 369, 659
BstSCI CCNGG 6 cut(s) 22, 255, 271, 294, 367, 657
BstV1I GCAGC 1 cut(s) 195
BstV2I GAAGAC 1 cut(s) 416
BstX2I RGATCY 3 cut(s) 238, 452, 472
BstYI RGATCY 3 cut(s) 238, 452, 472
BsuRI GGCC 2 cut(s) 271, 720
BtsCI GGATG 3 cut(s) 19, 823, 859
BtsIMutI CAGTG 2 cut(s) 12, 512
Cac8I GCNNGC 1 cut(s) 301
CaiI CAGNNNCTG 1 cut(s) 29
Cfr13I GGNCC 2 cut(s) 253, 697
Csp6I GTAC 3 cut(s) 137, 162, 385
CviAII CATG 3 cut(s) 585, 694, 851
CviQI GTAC 3 cut(s) 137, 162, 385
DdeI CTNAG 1 cut(s) 864
DpnI GATC 6 cut(s) 240, 454, 474, 538, 563, 855
DpnII GATC 6 cut(s) 238, 452, 472, 536, 561, 853
Eco47I GGWCC 2 cut(s) 253, 697
Eco57I CTGAAG 2 cut(s) 461, 636
EcoRII CCWGG 6 cut(s) 22, 255, 271, 294, 367, 657
FaeI CATG 3 cut(s) 588, 697, 854
FaiI YATR 9 cut(s) 148, 360, 586, 695, 752, 754, 773, 828, 852
FalI AAGNNNNNCTT 2 cut(s) 442, 474
FatI CATG 3 cut(s) 584, 693, 850
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 1 cut(s) 209
FokI GGATG 3 cut(s) 6, 830, 846
Fsp4HI GCNGC 1 cut(s) 209
FspBI CTAG 1 cut(s) 591
GluI GCNGC 1 cut(s) 209
HaeIII GGCC 2 cut(s) 271, 720
Hin1II CATG 3 cut(s) 588, 697, 854
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HindIII AAGCTT 1 cut(s) 51
HinfI GANTC 4 cut(s) 287, 317, 421, 727
HphI GGTGA 4 cut(s) 358, 434, 674, 842
Hpy166II GTNNAC 2 cut(s) 106, 833
Hpy188I TCNGA 7 cut(s) 187, 222, 322, 469, 480, 533, 616
Hpy188III TCNNGA 6 cut(s) 62, 88, 354, 565, 742, 793
Hpy8I GTNNAC 2 cut(s) 106, 833
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 2 cut(s) 717, 799
HpyCH4IV ACGT 4 cut(s) 108, 264, 390, 622
HpyCH4V TGCA 3 cut(s) 197, 211, 416
HpyF3I CTNAG 1 cut(s) 864
HpySE526I ACGT 4 cut(s) 108, 264, 390, 622
Hsp92II CATG 3 cut(s) 588, 697, 854
KpnI GGTACC 1 cut(s) 165
Kzo9I GATC 6 cut(s) 238, 452, 472, 536, 561, 853
Lsp1109I GCAGC 1 cut(s) 195
LweI GCATC 3 cut(s) 102, 403, 643
MaeI CTAG 1 cut(s) 591
MaeII ACGT 4 cut(s) 108, 264, 390, 622
MaeIII GTNAC 3 cut(s) 10, 346, 841
MalI GATC 6 cut(s) 240, 454, 474, 538, 563, 855
MboI GATC 6 cut(s) 238, 452, 472, 536, 561, 853
MflI RGATCY 3 cut(s) 238, 452, 472
MluCI AATT 4 cut(s) 83, 192, 331, 433
MlyI GAGTC 1 cut(s) 430
MmeI TCCRAC 2 cut(s) 511, 795
MnlI CCTC 7 cut(s) 124, 302, 455, 647, 723, 773, 789
MroXI GAANNNNTTC 2 cut(s) 172, 474
MseI TTAA 2 cut(s) 306, 609
MslI CAYNNNNRTG 1 cut(s) 770
MspR9I CCNGG 6 cut(s) 24, 257, 273, 296, 369, 659
MvaI CCWGG 6 cut(s) 24, 257, 273, 296, 369, 659
NdeII GATC 6 cut(s) 238, 452, 472, 536, 561, 853
NlaIII CATG 3 cut(s) 588, 697, 854
NlaIV GGNNCC 1 cut(s) 163
NmuCI GTSAC 2 cut(s) 10, 346
PasI CCCWGGG 1 cut(s) 658
PdmI GAANNNNTTC 2 cut(s) 172, 474
PfeI GAWTC 3 cut(s) 287, 317, 727
PflMI CCANNNNNTGG 1 cut(s) 29
PfoI TCCNGGA 1 cut(s) 255
PkrI GCNGC 1 cut(s) 210
PleI GAGTC 1 cut(s) 429
PpsI GAGTC 1 cut(s) 429
Ppu21I YACGTR 1 cut(s) 391
Psp1406I AACGTT 2 cut(s) 264, 622
Psp6I CCWGG 6 cut(s) 22, 255, 271, 294, 367, 657
PspGI CCWGG 6 cut(s) 22, 255, 271, 294, 367, 657
PspN4I GGNNCC 1 cut(s) 163
PspPI GGNCC 2 cut(s) 253, 697
PstNI CAGNNNCTG 1 cut(s) 29
PsuI RGATCY 3 cut(s) 238, 452, 472
RsaI GTAC 3 cut(s) 138, 163, 386
RsaNI GTAC 3 cut(s) 137, 162, 385
RseI CAYNNNNRTG 1 cut(s) 770
SalI GTCGAC 1 cut(s) 104
SaqAI TTAA 2 cut(s) 306, 609
SatI GCNGC 1 cut(s) 209
Sau3AI GATC 6 cut(s) 238, 452, 472, 536, 561, 853
Sau96I GGNCC 2 cut(s) 253, 697
SchI GAGTC 1 cut(s) 430
ScrFI CCNGG 6 cut(s) 24, 257, 273, 296, 369, 659
SfaNI GCATC 3 cut(s) 102, 403, 643
SinI GGWCC 2 cut(s) 253, 697
SmiMI CAYNNNNRTG 1 cut(s) 770
SmlI CTYRAG 1 cut(s) 714
SmoI CTYRAG 1 cut(s) 714
Sse9I AATT 4 cut(s) 83, 192, 331, 433
SsiI CCGC 1 cut(s) 594
SspMI CTAG 1 cut(s) 591
StyD4I CCNGG 6 cut(s) 22, 255, 271, 294, 367, 657
TaiI ACGT 4 cut(s) 111, 267, 393, 625
TaqI TCGA 1 cut(s) 105
TasI AATT 4 cut(s) 83, 192, 331, 433
TatI WGTACW 1 cut(s) 136
TfiI GAWTC 3 cut(s) 287, 317, 727
Tru1I TTAA 2 cut(s) 306, 609
Tru9I TTAA 2 cut(s) 306, 609
TscAI CASTG 2 cut(s) 19, 519
TseFI GTSAC 2 cut(s) 10, 346
TseI GCWGC 1 cut(s) 208
Tsp45I GTSAC 2 cut(s) 10, 346
TspDTI ATGAA 2 cut(s) 682, 696
TspRI CASTG 2 cut(s) 19, 519
Van91I CCANNNNNTGG 1 cut(s) 29
VpaK11BI GGWCC 2 cut(s) 253, 697
XapI RAATTY 1 cut(s) 83
XmiI GTMKAC 1 cut(s) 105
XmnI GAANNNNTTC 2 cut(s) 172, 474
XspI CTAG 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.