Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

26604722 .. 26614633

Gene Structure 9912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG272600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGATCAGTGCTAGTGTAAGTGTCAGAAACCCAAAAGTTCCCAAAGGAAGTGTAAAATCACATTCGGTGACAGGAGTTCAGTGTATCGCGGTGTTACTAGATATTGAAGAGGAAGCCGCCAAAGCTTATGATACTGCAATGATAAGGGTAAGAGGGAGGAGAGGGTTCCCCAATTTTGATATCAGTCTATATGATGTCCAAGTCATTCTGGATAGCACAACCTTTCCAATAAAAGGTGCTTCGAAGACCATAAAGCGGAGTTCAATTTATGATGTGCTTCAAAAGATAAGAAAGACTCGCAACTTCCCCAGCTCAACACCCAGTGCCCCTCCATCACTTCACCCAATAGATCAAACTCAAACAACGGCAATCGATTCAAGCCTTCAGTATCAATTTCATAGTCTGCGAGTAAAAGAGGATGCAACTAGACCTCATGGCCTAGCTGCTCTAAAATTATGGGGCGAGTCTGCGAGTTTGAATTTTCCGTTGAGCAACTACCTGAATGACCTGGAAGAAATGAAGTCATTTACGAAGAAGGAATACTTTCTACACATCAGAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010449 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031326 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0035266 GO:0040007 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098727 GO:0099402 GO:0140110 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

187

Amino Acids

20.94

Weight (kDa)

9.62

Isoelectric Point (pI)

45.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	89
AciI	CCGC	3 cut(s)	89, 117, 256
AcsI	RAATTY	1 cut(s)	478
AcuI	CTGAAG	1 cut(s)	368
AdeI	CACNNNGTG	1 cut(s)	323
AfiI	CCNNNNNNNGG	2 cut(s)	233, 255
AgsI	TTSAA	5 cut(s)	107, 264, 281, 378, 478
AjnI	CCWGG	1 cut(s)	507
AluBI	AGCT	3 cut(s)	125, 312, 443
AluI	AGCT	3 cut(s)	125, 312, 443
AoxI	GGCC	1 cut(s)	436
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	1 cut(s)	478
Asp700I	GAANNNNTTC	1 cut(s)	543
AsuHPI	GGTGA	2 cut(s)	79, 332
AsuII	TTCGAA	1 cut(s)	242
BaeGI	GKGCMC	1 cut(s)	328
BarI	GAAGNNNNNNTAC	2 cut(s)	524, 556
BbsI	GAAGAC	1 cut(s)	251
BbvI	GCAGC	1 cut(s)	430
BccI	CCATC	1 cut(s)	340
BceAI	ACGGC	1 cut(s)	381
BciT130I	CCWGG	1 cut(s)	509
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	4 cut(s)	12, 98, 426, 440
BisI	GCNGC	2 cut(s)	117, 444
BlsI	GCNGC	2 cut(s)	118, 445
Bme1390I	CCNGG	1 cut(s)	509
BmiI	GGNNCC	1 cut(s)	167
BmrFI	CCNGG	1 cut(s)	509
BmrI	ACTGGG	1 cut(s)	315
BmsI	GCATC	1 cut(s)	409
BmuI	ACTGGG	1 cut(s)	315
BpiI	GAAGAC	1 cut(s)	251
Bpu14I	TTCGAA	1 cut(s)	242
Bsa29I	ATCGAT	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 255
Bse1I	ACTGG	1 cut(s)	321
Bse3DI	GCAATG	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	509
BseCI	ATCGAT	1 cut(s)	372
BseGI	GGATG	1 cut(s)	424
BseLI	CCNNNNNNNGG	2 cut(s)	233, 255
BseMI	GCAATG	1 cut(s)	144
BseNI	ACTGG	1 cut(s)	321
BseRI	GAGGAG	1 cut(s)	172
BseSI	GKGCMC	1 cut(s)	328
BseXI	GCAGC	1 cut(s)	430
BseYI	CCCAGC	1 cut(s)	308
Bsh1236I	CGCG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	438
BshVI	ATCGAT	1 cut(s)	372
BslI	CCNNNNNNNGG	2 cut(s)	233, 255
BsnI	GGCC	1 cut(s)	438
Bsp119I	TTCGAA	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	328
Bsp143I	GATC	2 cut(s)	3, 349
BspACI	CCGC	3 cut(s)	89, 117, 256
BspANI	GGCC	1 cut(s)	438
BspDI	ATCGAT	1 cut(s)	372
BspFNI	CGCG	1 cut(s)	89
BspLI	GGNNCC	1 cut(s)	167
BspT104I	TTCGAA	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	321
BssMI	GATC	2 cut(s)	3, 349
Bst2UI	CCWGG	1 cut(s)	509
Bst6I	CTCTTC	1 cut(s)	102
BstBI	TTCGAA	1 cut(s)	242
BstF5I	GGATG	1 cut(s)	424
BstFNI	CGCG	1 cut(s)	89
BstKTI	GATC	2 cut(s)	6, 352
BstMBI	GATC	2 cut(s)	3, 349
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstNI	CCWGG	1 cut(s)	509
BstSCI	CCNGG	1 cut(s)	507
BstSLI	GKGCMC	1 cut(s)	328
BstUI	CGCG	1 cut(s)	89
BstV1I	GCAGC	1 cut(s)	430
BstV2I	GAAGAC	1 cut(s)	251
Bsu15I	ATCGAT	1 cut(s)	372
BsuRI	GGCC	1 cut(s)	438
BsuTUI	ATCGAT	1 cut(s)	372
BtsCI	GGATG	1 cut(s)	424
BtsIMutI	CAGTG	3 cut(s)	13, 86, 328
ClaI	ATCGAT	1 cut(s)	372
CviAII	CATG	1 cut(s)	434
CviJI	RGCY	6 cut(s)	116, 125, 312, 381, 438, 443
CviKI_1	RGCY	6 cut(s)	116, 125, 312, 381, 438, 443
DpnI	GATC	2 cut(s)	5, 351
DpnII	GATC	2 cut(s)	3, 349
DraIII	CACNNNGTG	1 cut(s)	323
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco32I	GATATC	1 cut(s)	181
Eco57I	CTGAAG	1 cut(s)	368
EcoRII	CCWGG	1 cut(s)	507
EcoRV	GATATC	1 cut(s)	181
FaeI	CATG	1 cut(s)	437
FaiI	YATR	8 cut(s)	129, 190, 192, 251, 270, 399, 435, 457
FalI	AAGNNNNNCTT	2 cut(s)	527, 559
FatI	CATG	1 cut(s)	433
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	117, 444
FokI	GGATG	1 cut(s)	431
Fsp4HI	GCNGC	2 cut(s)	117, 444
FspBI	CTAG	4 cut(s)	12, 98, 426, 440
GluI	GCNGC	2 cut(s)	117, 444
GsaI	CCCAGC	1 cut(s)	312
HaeIII	GGCC	1 cut(s)	438
Hin1II	CATG	1 cut(s)	437
HindIII	AAGCTT	1 cut(s)	123
HinfI	GANTC	3 cut(s)	295, 374, 464
HphI	GGTGA	2 cut(s)	79, 332
Hpy188I	TCNGA	2 cut(s)	26, 557
Hpy188III	TCNNGA	1 cut(s)	209
HpyAV	CCTTC	2 cut(s)	392, 529
HpyCH4V	TGCA	2 cut(s)	137, 422
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
Hsp92II	CATG	1 cut(s)	437
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 349
LpnPI	CCDG	7 cut(s)	57, 194, 322, 334, 494, 512, 521
Lsp1109I	GCAGC	1 cut(s)	430
LweI	GCATC	1 cut(s)	409
MaeI	CTAG	4 cut(s)	12, 98, 426, 440
MaeIII	GTNAC	2 cut(s)	67, 93
MalI	GATC	2 cut(s)	5, 351
MboI	GATC	2 cut(s)	3, 349
MboII	GAAGA	4 cut(s)	119, 256, 524, 544
MhlI	GDGCHC	1 cut(s)	328
MluCI	AATT	5 cut(s)	172, 264, 392, 452, 478
MlyI	GAGTC	2 cut(s)	289, 473
MnlI	CCTC	7 cut(s)	103, 146, 150, 155, 339, 409, 441
MroXI	GAANNNNTTC	1 cut(s)	543
MspR9I	CCNGG	1 cut(s)	509
MvaI	CCWGG	1 cut(s)	509
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	1 cut(s)	122
NdeII	GATC	2 cut(s)	3, 349
NlaIII	CATG	1 cut(s)	437
NlaIV	GGNNCC	1 cut(s)	167
NmuCI	GTSAC	1 cut(s)	67
NspV	TTCGAA	1 cut(s)	242
PdmI	GAANNNNTTC	1 cut(s)	543
PfeI	GAWTC	1 cut(s)	374
PkrI	GCNGC	2 cut(s)	118, 445
PleI	GAGTC	2 cut(s)	289, 472
PpsI	GAGTC	2 cut(s)	289, 472
Psp6I	CCWGG	1 cut(s)	507
PspFI	CCCAGC	1 cut(s)	308
PspGI	CCWGG	1 cut(s)	507
PspN4I	GGNNCC	1 cut(s)	167
SatI	GCNGC	2 cut(s)	117, 444
Sau3AI	GATC	2 cut(s)	3, 349
SchI	GAGTC	2 cut(s)	289, 473
ScrFI	CCNGG	1 cut(s)	509
SduI	GDGCHC	1 cut(s)	328
SetI	ASST	8 cut(s)	127, 224, 238, 314, 433, 445, 501, 510
SfaNI	GCATC	1 cut(s)	409
SfuI	TTCGAA	1 cut(s)	242
Sse9I	AATT	5 cut(s)	172, 264, 392, 452, 478
SsiI	CCGC	3 cut(s)	89, 117, 256
SspMI	CTAG	4 cut(s)	12, 98, 426, 440
StyD4I	CCNGG	1 cut(s)	507
TaqI	TCGA	2 cut(s)	242, 372
TasI	AATT	5 cut(s)	172, 264, 392, 452, 478
TauI	GCSGC	1 cut(s)	119
TfiI	GAWTC	1 cut(s)	374
TscAI	CASTG	3 cut(s)	13, 86, 328
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	1 cut(s)	443
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	2 cut(s)	386, 533
TspGWI	ACGGA	1 cut(s)	474
TspRI	CASTG	3 cut(s)	13, 86, 328
XapI	RAATTY	1 cut(s)	478
XmnI	GAANNNNTTC	1 cut(s)	543
XspI	CTAG	4 cut(s)	12, 98, 426, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.