Rh3BG293800

LYK5-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
N/A
Physical Location & Seq
Forward (+)
29475141 .. 29484662
9522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG293800.1

Sequence Viewer

Length: 1377 bp
ATGTGCCATATTGGCAATCCGCGTGACCTTGCTCTTAACCAATCAACGCACAGCATCGGGTCCCATATATTAGAACCCCACTGCTTTACAAATTCCATCACAGAGCAACACCCAACCCACTCTCTCTCTCAAATCAGGTCTCTGTCCAGGTCAAGCAAAGCTGGGCTTCAATTTCCGGTGGGTAGGATCCCCCGGTTTCTTAAGTCAGGCCAGTACGCCGAGCGTGTCTGCGCCGGAGCTCTGGTGTATCTTTCAGCTGTCCTTGAATACCTGGCTGCTGAGGTTTTGGAGCTTGCTAGCAACGCAGCTAGGGACAACAAGAAGAACCGTATTGTATCGAGGTCATTCAATAGGATTGGAGGGTCTGTATACAGGGCTGTAATTGATGGGAAGGTCTTGGCTGTGAAGAAAACCAAGGAAGATGTCACTGAGGAACTAAATATCCTGCAGAAGGTAAATCATGCAAATCTGGTGAAACTTATGGGCATCTCATCTGAGATCGACGGGGATCGCTTCTTGGTTTATGAATATGCTGAAAATGGATTATTTGATAAATGGTTGCACTATAAATCTTCAACCGGTTCTAGTTCTGGGGCATTCCTCACATGGAGTCAGAGATTAAGCATAGCTCTAGATGTTGCCAATGGCCTGCAATACATGCATGAACACACGCAACCGAGCATCGTTCACATGGATATAAGGACAAGTAACATACTTCTTGACTCCAAATACAAGGCCAAGATAGCAAACTTCTCCATGGCTAGAACTGCTGCAAACAGTGTTACACAAAAGGCGGATGTTTTCTCTTTCGGTGTTGTTCTGTTGTCTTTGCTTTCGGGGAAGAAAGGCATGGAAACAAAAGAGAATGGCGAGGTCATCATGTTGTGGAAGGATGTTAGGGGGGTTTTGGAAGCTGAAGAGAAAAAACAGGAGAGGTTGAGAGCATGGATGGATCCAACTTTGGAGAGTTTCTATCCCATTGATGGTGCTTTGAGCTTGACAGCCTTGGCAAGCGCATGCACACAGGAAAAGTCATCAGCAATACCAAGCATGGCAGAAGTTGTCTTCAACCTCTCTGTTCTTACTCATTCATCATCTGAGTCGACACTGGAGAGGCCTTGGAATTCTGCATTGGAAGCAGAAGAAACCTGCTACAAATGCTATGACGCCAAAAGTGGATGTTTTTGCATTTGGAGTCATATTCTGTTGGAGTTGCTTTCAGGAAAGAGAGGCGTGGCAATAAAAGACGGTGGTGAAGTTGTTATGTTGTGCAAAAATATAAGGGAGGTGTTGAAGGATGAAGATGAGAAATTGGAGAGATTAAGACAATGGATGGACCCAAAATTGGAGGACTTACATCCCATGATGACGCGTTGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

458

Amino Acids

51.11

Weight (kDa)

7.22

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 44 - 114 5.7e-07 Core histone H2A/H2B/H3/H4 domain
Pkinase PF00069 131 - 260 1.8e-19 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 136 - 257 3.1e-21 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1157
AccI GTMKAC 2 cut(s) 369, 1103
AccII CGCG 2 cut(s) 22, 1372
AciI CCGC 2 cut(s) 20, 794
AclWI GGATC 5 cut(s) 181, 194, 516, 947, 960
AcsI RAATTY 2 cut(s) 91, 1123
AcuI CTGAAG 1 cut(s) 936
AcyI GRCGYC 1 cut(s) 1167
AfaI GTAC 1 cut(s) 215
AfiI CCNNNNNNNGG 3 cut(s) 451, 983, 1345
AflII CTTAAG 1 cut(s) 200
AflIII ACRYGT 1 cut(s) 1370
AgeI ACCGGT 1 cut(s) 578
AgsI TTSAA 6 cut(s) 170, 266, 349, 576, 1069, 1294
AjnI CCWGG 2 cut(s) 146, 270
AjuI GAANNNNNNNTTGG 2 cut(s) 1115, 1147
AloI GAACNNNNNNTCC 2 cut(s) 426, 458
AluBI AGCT 8 cut(s) 161, 239, 257, 292, 308, 629, 914, 996
AluI AGCT 8 cut(s) 161, 239, 257, 292, 308, 629, 914, 996
Alw21I GWGCWC 1 cut(s) 241
Alw26I GTCTC 1 cut(s) 144
AlwI GGATC 5 cut(s) 181, 194, 516, 947, 960
AoxI GGCC 4 cut(s) 208, 646, 735, 1115
ApeKI GCWGC 3 cut(s) 275, 305, 770
ApoI RAATTY 2 cut(s) 91, 1123
AsiGI ACCGGT 1 cut(s) 578
AspLEI GCGC 2 cut(s) 233, 1016
AspS9I GGNCC 2 cut(s) 60, 1336
AsuC2I CCSGG 1 cut(s) 193
AsuHPI GGTGA 2 cut(s) 484, 1265
AsuNHI GCTAGC 1 cut(s) 296
AvaII GGWCC 2 cut(s) 60, 1336
BamHI GGATCC 2 cut(s) 186, 952
BanII GRGCYC 1 cut(s) 241
BbsI GAAGAC 1 cut(s) 1057
Bbv12I GWGCWC 1 cut(s) 241
BbvCI CCTCAGC 1 cut(s) 279
BbvI GCAGC 3 cut(s) 262, 317, 757
BccI CCATC 5 cut(s) 104, 380, 943, 977, 1327
BciT130I CCWGG 2 cut(s) 148, 272
BcnI CCSGG 1 cut(s) 193
BcoDI GTCTC 1 cut(s) 144
BfaI CTAG 5 cut(s) 297, 309, 585, 632, 762
BfmI CTRYAG 1 cut(s) 446
BfrI CTTAAG 1 cut(s) 200
BfuAI ACCTGC 1 cut(s) 1157
BglI GCCNNNNNGGC 1 cut(s) 12
BisI GCNGC 3 cut(s) 276, 306, 771
BlsI GCNGC 3 cut(s) 277, 307, 772
Bme1390I CCNGG 3 cut(s) 148, 193, 272
Bme18I GGWCC 2 cut(s) 60, 1336
BmgT120I GGNCC 2 cut(s) 60, 1336
BmiI GGNNCC 5 cut(s) 61, 62, 188, 954, 1338
BmrFI CCNGG 3 cut(s) 148, 193, 272
BmsI GCATC 3 cut(s) 63, 495, 690
BmtI GCTAGC 1 cut(s) 300
BpiI GAAGAC 1 cut(s) 1057
BpmI CTGGAG 1 cut(s) 1130
Bpu10I CCTNAGC 1 cut(s) 279
BpuMI CCSGG 1 cut(s) 193
BsaHI GRCGYC 1 cut(s) 1167
BsaI GGTCTC 1 cut(s) 144
BsaJI CCNNGG 5 cut(s) 191, 414, 756, 1005, 1118
BsaWI WCCGGW 2 cut(s) 175, 578
BsaXI ACNNNNNCTCC 4 cut(s) 228, 258, 351, 381
Bsc4I CCNNNNNNNGG 3 cut(s) 451, 983, 1345
Bse118I RCCGGY 1 cut(s) 578
Bse1I ACTGG 2 cut(s) 211, 1113
BseBI CCWGG 2 cut(s) 148, 272
BseDI CCNNGG 5 cut(s) 191, 414, 756, 1005, 1118
BseGI GGATG 7 cut(s) 802, 898, 954, 1184, 1303, 1338, 1357
BseLI CCNNNNNNNGG 3 cut(s) 451, 983, 1345
BseMII CTCAG 4 cut(s) 270, 420, 486, 1089
BseNI ACTGG 2 cut(s) 211, 1113
BseXI GCAGC 3 cut(s) 262, 317, 757
BseYI CCCAGC 1 cut(s) 161
Bsh1236I CGCG 2 cut(s) 22, 1372
BshFI GGCC 4 cut(s) 210, 648, 737, 1117
BshTI ACCGGT 1 cut(s) 578
BsiHKAI GWGCWC 1 cut(s) 241
BsiSI CCGG 4 cut(s) 176, 193, 234, 579
BslFI GGGAC 2 cut(s) 46, 326
BslI CCNNNNNNNGG 3 cut(s) 451, 983, 1345
BsmAI GTCTC 1 cut(s) 144
BsmFI GGGAC 2 cut(s) 46, 326
BsmI GAATGC 1 cut(s) 596
BsnI GGCC 4 cut(s) 210, 648, 737, 1117
Bso31I GGTCTC 1 cut(s) 144
Bsp1286I GDGCHC 1 cut(s) 241
Bsp143I GATC 4 cut(s) 186, 498, 508, 952
Bsp19I CCATGG 1 cut(s) 756
BspACI CCGC 2 cut(s) 20, 794
BspANI GGCC 4 cut(s) 210, 648, 737, 1117
BspCNI CTCAG 4 cut(s) 271, 421, 487, 1090
BspFNI CGCG 2 cut(s) 22, 1372
BspLI GGNNCC 5 cut(s) 61, 62, 188, 954, 1338
BspMAI CTGCAG 1 cut(s) 450
BspMI ACCTGC 1 cut(s) 1157
BspOI GCTAGC 1 cut(s) 300
BspPI GGATC 5 cut(s) 181, 194, 516, 947, 960
BspTI CTTAAG 1 cut(s) 200
BspTNI GGTCTC 1 cut(s) 144
BsrFI RCCGGY 1 cut(s) 578
BsrI ACTGG 2 cut(s) 211, 1113
BssAI RCCGGY 1 cut(s) 578
BssECI CCNNGG 5 cut(s) 191, 414, 756, 1005, 1118
BssMI GATC 4 cut(s) 186, 498, 508, 952
BssNAI GTATAC 1 cut(s) 370
BssNI GRCGYC 1 cut(s) 1167
BssT1I CCWWGG 4 cut(s) 414, 756, 1005, 1118
Bst1107I GTATAC 1 cut(s) 370
Bst2UI CCWGG 2 cut(s) 148, 272
Bst4CI ACNGT 3 cut(s) 329, 779, 1250
Bst6I CTCTTC 1 cut(s) 912
BstACI GRCGYC 1 cut(s) 1167
BstAFI CTTAAG 1 cut(s) 200
BstAPI GCANNNNNTGC 1 cut(s) 658
BstC8I GCNNGC 5 cut(s) 294, 298, 650, 1012, 1018
BstDEI CTNAG 4 cut(s) 279, 429, 495, 1098
BstDSI CCRYGG 1 cut(s) 756
BstENI CCTNNNNNAGG 1 cut(s) 449
BstF5I GGATG 7 cut(s) 802, 898, 954, 1184, 1303, 1338, 1357
BstFNI CGCG 2 cut(s) 22, 1372
BstHHI GCGC 2 cut(s) 233, 1016
BstKTI GATC 4 cut(s) 189, 501, 511, 955
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 4 cut(s) 186, 498, 508, 952
BstMWI GCNNNNNNNGC 7 cut(s) 12, 302, 658, 743, 767, 1136, 1158
BstNI CCWGG 2 cut(s) 148, 272
BstNSI RCATGY 2 cut(s) 661, 1020
BstSCI CCNGG 3 cut(s) 146, 191, 270
BstSFI CTRYAG 1 cut(s) 446
BstUI CGCG 2 cut(s) 22, 1372
BstV1I GCAGC 3 cut(s) 262, 317, 757
BstV2I GAAGAC 1 cut(s) 1057
BstX2I RGATCY 2 cut(s) 186, 952
BstYI RGATCY 2 cut(s) 186, 952
BstZ17I GTATAC 1 cut(s) 370
BsuRI GGCC 4 cut(s) 210, 648, 737, 1117
BtgI CCRYGG 1 cut(s) 756
BtsCI GGATG 7 cut(s) 802, 898, 954, 1184, 1303, 1338, 1357
BtsI GCAGTG 1 cut(s) 79
BtsIMutI CAGTG 4 cut(s) 79, 426, 784, 1106
BveI ACCTGC 1 cut(s) 1157
Cac8I GCNNGC 5 cut(s) 294, 298, 650, 1012, 1018
CfoI GCGC 2 cut(s) 233, 1016
Cfr10I RCCGGY 1 cut(s) 578
Cfr13I GGNCC 2 cut(s) 60, 1336
CseI GACGC 1 cut(s) 1175
Csp6I GTAC 1 cut(s) 214
CspAI ACCGGT 1 cut(s) 578
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 4 cut(s) 279, 429, 495, 1098
DpnI GATC 4 cut(s) 188, 500, 510, 954
DpnII GATC 4 cut(s) 186, 498, 508, 952
Eam1104I CTCTTC 1 cut(s) 912
EarI CTCTTC 1 cut(s) 912
EciI GGCGGA 1 cut(s) 809
Ecl136II GAGCTC 1 cut(s) 239
Eco130I CCWWGG 4 cut(s) 414, 756, 1005, 1118
Eco147I AGGCCT 1 cut(s) 1117
Eco24I GRGCYC 1 cut(s) 241
Eco31I GGTCTC 1 cut(s) 144
Eco47I GGWCC 2 cut(s) 60, 1336
Eco53kI GAGCTC 1 cut(s) 239
Eco57I CTGAAG 1 cut(s) 936
EcoICRI GAGCTC 1 cut(s) 239
EcoNI CCTNNNNNAGG 1 cut(s) 449
EcoO109I RGGNCCY 1 cut(s) 60
EcoRI GAATTC 1 cut(s) 1123
EcoRII CCWGG 2 cut(s) 146, 270
EcoT14I CCWWGG 4 cut(s) 414, 756, 1005, 1118
EcoT22I ATGCAT 1 cut(s) 663
EcoT38I GRGCYC 1 cut(s) 241
ErhI CCWWGG 4 cut(s) 414, 756, 1005, 1118
FalI AAGNNNNNCTT 2 cut(s) 150, 182
FaqI GGGAC 2 cut(s) 46, 326
FblI GTMKAC 2 cut(s) 369, 1103
Fnu4HI GCNGC 3 cut(s) 276, 306, 771
FokI GGATG 7 cut(s) 809, 905, 961, 1191, 1310, 1344, 1345
FriOI GRGCYC 1 cut(s) 241
Fsp4HI GCNGC 3 cut(s) 276, 306, 771
FspBI CTAG 5 cut(s) 297, 309, 585, 632, 762
GlaI GCGC 2 cut(s) 232, 1015
GluI GCNGC 3 cut(s) 276, 306, 771
GsaI CCCAGC 1 cut(s) 165
GsuI CTGGAG 1 cut(s) 1130
HaeIII GGCC 4 cut(s) 210, 648, 737, 1117
HapII CCGG 4 cut(s) 176, 193, 234, 579
HgaI GACGC 1 cut(s) 1175
HhaI GCGC 2 cut(s) 233, 1016
Hin1I GRCGYC 1 cut(s) 1167
Hin6I GCGC 2 cut(s) 231, 1014
HinP1I GCGC 2 cut(s) 231, 1014
HincII GTYRAC 1 cut(s) 1104
HindII GTYRAC 1 cut(s) 1104
HinfI GANTC 4 cut(s) 610, 722, 1100, 1195
HpaII CCGG 4 cut(s) 176, 193, 234, 579
HphI GGTGA 2 cut(s) 484, 1265
Hpy166II GTNNAC 3 cut(s) 370, 688, 1104
Hpy188I TCNGA 3 cut(s) 496, 615, 1099
Hpy188III TCNNGA 3 cut(s) 632, 719, 1221
Hpy8I GTNNAC 3 cut(s) 370, 688, 1104
Hpy99I CGWCG 1 cut(s) 506
HpyAV CCTTC 4 cut(s) 385, 445, 883, 1288
HpyCH4III ACNGT 3 cut(s) 329, 779, 1250
HpyF10VI GCNNNNNNNGC 7 cut(s) 12, 302, 658, 743, 767, 1136, 1158
HpyF3I CTNAG 4 cut(s) 279, 429, 495, 1098
Hsp92I GRCGYC 1 cut(s) 1167
HspAI GCGC 2 cut(s) 231, 1014
KflI GGGWCCC 1 cut(s) 60
Kzo9I GATC 4 cut(s) 186, 498, 508, 952
LmnI GCTCC 2 cut(s) 236, 289
Lsp1109I GCAGC 3 cut(s) 262, 317, 757
LweI GCATC 3 cut(s) 63, 495, 690
MaeI CTAG 5 cut(s) 297, 309, 585, 632, 762
MaeIII GTNAC 4 cut(s) 23, 424, 707, 781
MalI GATC 4 cut(s) 188, 500, 510, 954
MboI GATC 4 cut(s) 186, 498, 508, 952
MboII GAAGA 9 cut(s) 334, 418, 431, 564, 853, 929, 1057, 1154, 1313
MflI RGATCY 2 cut(s) 186, 952
MhlI GDGCHC 1 cut(s) 241
MluCI AATT 6 cut(s) 91, 170, 381, 1123, 1310, 1343
MluI ACGCGT 1 cut(s) 1370
MlyI GAGTC 4 cut(s) 619, 716, 1109, 1204
MmeI TCCRAC 2 cut(s) 980, 1188
Mph1103I ATGCAT 1 cut(s) 663
MseI TTAA 4 cut(s) 36, 201, 620, 1322
MspA1I CMGCKG 1 cut(s) 257
MspCI CTTAAG 1 cut(s) 200
MspI CCGG 4 cut(s) 176, 193, 234, 579
MspR9I CCNGG 3 cut(s) 148, 193, 272
Mva1269I GAATGC 1 cut(s) 596
MvaI CCWGG 2 cut(s) 148, 272
MvnI CGCG 2 cut(s) 22, 1372
MwoI GCNNNNNNNGC 7 cut(s) 12, 302, 658, 743, 767, 1136, 1158
NciI CCSGG 1 cut(s) 193
NcoI CCATGG 1 cut(s) 756
NdeII GATC 4 cut(s) 186, 498, 508, 952
NheI GCTAGC 1 cut(s) 296
NlaIV GGNNCC 5 cut(s) 61, 62, 188, 954, 1338
NmeAIII GCCGAG 1 cut(s) 244
NmuCI GTSAC 2 cut(s) 23, 424
NsiI ATGCAT 1 cut(s) 663
NspI RCATGY 2 cut(s) 661, 1020
PaeI GCATGC 1 cut(s) 1020
PceI AGGCCT 1 cut(s) 1117
PctI GAATGC 1 cut(s) 596
PinAI ACCGGT 1 cut(s) 578
PkrI GCNGC 3 cut(s) 277, 307, 772
PleI GAGTC 4 cut(s) 618, 716, 1108, 1203
PpsI GAGTC 4 cut(s) 618, 716, 1108, 1203
PpuMI RGGWCCY 1 cut(s) 60
Psp124BI GAGCTC 1 cut(s) 241
Psp5II RGGWCCY 1 cut(s) 60
Psp6I CCWGG 2 cut(s) 146, 270
PspFI CCCAGC 1 cut(s) 161
PspGI CCWGG 2 cut(s) 146, 270
PspN4I GGNNCC 5 cut(s) 61, 62, 188, 954, 1338
PspPI GGNCC 2 cut(s) 60, 1336
PspPPI RGGWCCY 1 cut(s) 60
PstI CTGCAG 1 cut(s) 450
PsuI RGATCY 2 cut(s) 186, 952
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
SacI GAGCTC 1 cut(s) 241
SalI GTCGAC 1 cut(s) 1102
SaqAI TTAA 4 cut(s) 36, 201, 620, 1322
SatI GCNGC 3 cut(s) 276, 306, 771
Sau3AI GATC 4 cut(s) 186, 498, 508, 952
Sau96I GGNCC 2 cut(s) 60, 1336
SchI GAGTC 4 cut(s) 619, 716, 1109, 1204
ScrFI CCNGG 3 cut(s) 148, 193, 272
SduI GDGCHC 1 cut(s) 241
SfaNI GCATC 3 cut(s) 63, 495, 690
SfcI CTRYAG 1 cut(s) 446
SinI GGWCC 2 cut(s) 60, 1336
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
SphI GCATGC 1 cut(s) 1020
Sse9I AATT 6 cut(s) 91, 170, 381, 1123, 1310, 1343
SseBI AGGCCT 1 cut(s) 1117
SsiI CCGC 2 cut(s) 20, 794
SspMI CTAG 5 cut(s) 297, 309, 585, 632, 762
SstI GAGCTC 1 cut(s) 241
StuI AGGCCT 1 cut(s) 1117
StyD4I CCNGG 3 cut(s) 146, 191, 270
StyI CCWWGG 4 cut(s) 414, 756, 1005, 1118
TaaI ACNGT 3 cut(s) 329, 779, 1250
TaqI TCGA 3 cut(s) 338, 501, 1103
TasI AATT 6 cut(s) 91, 170, 381, 1123, 1310, 1343
Tru1I TTAA 4 cut(s) 36, 201, 620, 1322
Tru9I TTAA 4 cut(s) 36, 201, 620, 1322
TscAI CASTG 4 cut(s) 86, 433, 784, 1113
TseFI GTSAC 2 cut(s) 23, 424
TseI GCWGC 3 cut(s) 275, 305, 770
Tsp45I GTSAC 2 cut(s) 23, 424
TspDTI ATGAA 4 cut(s) 540, 678, 1080, 1314
TspRI CASTG 4 cut(s) 86, 433, 784, 1113
Vha464I CTTAAG 1 cut(s) 200
VpaK11BI GGWCC 2 cut(s) 60, 1336
XagI CCTNNNNNAGG 1 cut(s) 449
XapI RAATTY 2 cut(s) 91, 1123
XbaI TCTAGA 1 cut(s) 631
XceI RCATGY 2 cut(s) 661, 1020
XmiI GTMKAC 2 cut(s) 369, 1103
XspI CTAG 5 cut(s) 297, 309, 585, 632, 762
Zsp2I ATGCAT 1 cut(s) 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.