Rh3BG326400

U-box domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
N/A
Physical Location & Seq
Reverse (-)
33922127 .. 33924135
2009 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG326400.1

Sequence Viewer

Length: 702 bp
ATGGATCGAAGTGAAATTCTTGAAGCAGAGGACAATCTCTCATTGCAGATACCTTCCCCTCTGTCAATTGTTGCCATTGCTATCAATGGCAACAGAAAAAGCAAATACATTGTGAAGTGGGCGGTGGAGAAGTTCATTCCTGAAGGAAACCTCTTTTTCAAGTTGATACATGTCCGAGCAAGAATAACTGGAATTCCAACACCAATGGGGAATCTGATTCCTATTTCAGAAGTACGAGAAGATGTAGTAGCTGCATATAGAAAGGACATGGAGTGGCAGACAATCATTGAGTCAGATAATGTGGCAAATGCAATAGCAGAGGAGGTTTCTAAGTCTGCTATAAGCAATCTTGTCATAGGTGCCCCATCTCGTGGCTTGTTTACAAGGAAACAAAAGGGACTGTCCCCAAAAATCTCAGCTTGCACACCAGGATTTTGTACAGTCTATGCTGTTTCAAAAGGAAAATTGTCATCACTACGCCCATCTGATTCCCAGTCTGTTGGAAGCATCAGAGATGATAACAGTGACACTTCTTCTATCAGTAGTTCTTTGAGTAATGCGTCCAGCTCACAAACAGGCACAGATCGTGGATCTGTTGGTTCATACTCTCATTTTCGTTCTCCTTCCCTACCGATGCAGCGATTTCAAGCTCTTTCAAAGTATGAACCAAAATCTTCTGAATACAAAAGCAAAGTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

233

Amino Acids

25.38

Weight (kDa)

9.39

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 359
AccB7I CCANNNNNTGG 1 cut(s) 371
AciI CCGC 1 cut(s) 122
AclWI GGATC 2 cut(s) 12, 598
AcsI RAATTY 2 cut(s) 15, 192
AcuI CTGAAG 1 cut(s) 162
AfaI GTAC 2 cut(s) 234, 439
AfiI CCNNNNNNNGG 1 cut(s) 371
AflIII ACRYGT 1 cut(s) 169
AgsI TTSAA 5 cut(s) 23, 160, 456, 647, 657
AjnI CCWGG 1 cut(s) 427
AluBI AGCT 4 cut(s) 251, 419, 567, 650
AluI AGCT 4 cut(s) 251, 419, 567, 650
AlwI GGATC 2 cut(s) 12, 598
ApeKI GCWGC 2 cut(s) 251, 637
ApoI RAATTY 2 cut(s) 15, 192
ArsI GACNNNNNNTTYG 1 cut(s) 678
BaeGI GKGCMC 1 cut(s) 364
BanI GGYRCC 1 cut(s) 359
BauI CACGAG 1 cut(s) 369
BbvI GCAGC 2 cut(s) 238, 649
BccI CCATC 2 cut(s) 373, 490
BciT130I CCWGG 1 cut(s) 429
BisI GCNGC 2 cut(s) 252, 638
BlsI GCNGC 2 cut(s) 253, 639
Bme1390I CCNGG 1 cut(s) 429
BmiI GGNNCC 1 cut(s) 361
BmrFI CCNGG 1 cut(s) 429
BmrI ACTGGG 1 cut(s) 487
BmsI GCATC 2 cut(s) 516, 624
BmuI ACTGGG 1 cut(s) 487
Bsc4I CCNNNNNNNGG 1 cut(s) 371
Bse1I ACTGG 2 cut(s) 193, 493
Bse3DI GCAATG 2 cut(s) 41, 75
BseBI CCWGG 1 cut(s) 429
BseLI CCNNNNNNNGG 1 cut(s) 371
BseMI GCAATG 2 cut(s) 41, 75
BseMII CTCAG 1 cut(s) 429
BseNI ACTGG 2 cut(s) 193, 493
BseRI GAGGAG 1 cut(s) 335
BseSI GKGCMC 1 cut(s) 364
BseXI GCAGC 2 cut(s) 238, 649
BshNI GGYRCC 1 cut(s) 359
BslFI GGGAC 2 cut(s) 388, 411
BslI CCNNNNNNNGG 1 cut(s) 371
BsmFI GGGAC 2 cut(s) 388, 411
Bsp1286I GDGCHC 1 cut(s) 364
Bsp1407I TGTACA 1 cut(s) 437
Bsp143I GATC 3 cut(s) 4, 583, 590
BspACI CCGC 1 cut(s) 122
BspCNI CTCAG 1 cut(s) 428
BspLI GGNNCC 1 cut(s) 361
BspPI GGATC 2 cut(s) 12, 598
BspT107I GGYRCC 1 cut(s) 359
BsrDI GCAATG 2 cut(s) 41, 75
BsrGI TGTACA 1 cut(s) 437
BsrI ACTGG 2 cut(s) 193, 493
BssMI GATC 3 cut(s) 4, 583, 590
BssSI CACGAG 1 cut(s) 369
Bst2BI CACGAG 1 cut(s) 369
Bst2UI CCWGG 1 cut(s) 429
Bst4CI ACNGT 3 cut(s) 402, 442, 524
BstAUI TGTACA 1 cut(s) 437
BstC8I GCNNGC 1 cut(s) 421
BstDEI CTNAG 2 cut(s) 330, 415
BstKTI GATC 3 cut(s) 7, 586, 593
BstMBI GATC 3 cut(s) 4, 583, 590
BstNI CCWGG 1 cut(s) 429
BstNSI RCATGY 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 427
BstSLI GKGCMC 1 cut(s) 364
BstV1I GCAGC 2 cut(s) 238, 649
BstX2I RGATCY 1 cut(s) 590
BstXI CCANNNNNNTGG 1 cut(s) 500
BstYI RGATCY 1 cut(s) 590
BtsIMutI CAGTG 1 cut(s) 529
Cac8I GCNNGC 1 cut(s) 421
CseI GACGC 1 cut(s) 549
Csp6I GTAC 2 cut(s) 233, 438
CviAII CATG 2 cut(s) 170, 268
CviJI RGCY 5 cut(s) 251, 375, 419, 567, 650
CviKI_1 RGCY 5 cut(s) 251, 375, 419, 567, 650
CviQI GTAC 2 cut(s) 233, 438
DdeI CTNAG 2 cut(s) 330, 415
DpnI GATC 3 cut(s) 6, 585, 592
DpnII GATC 3 cut(s) 4, 583, 590
Eco57I CTGAAG 1 cut(s) 162
EcoRI GAATTC 1 cut(s) 192
EcoRII CCWGG 1 cut(s) 427
FaeI CATG 2 cut(s) 173, 271
FaiI YATR 9 cut(s) 171, 256, 258, 269, 341, 356, 447, 604, 663
FaqI GGGAC 2 cut(s) 388, 411
FatI CATG 2 cut(s) 169, 267
Fnu4HI GCNGC 2 cut(s) 252, 638
Fsp4HI GCNGC 2 cut(s) 252, 638
GluI GCNGC 2 cut(s) 252, 638
HgaI GACGC 1 cut(s) 549
Hin1II CATG 2 cut(s) 173, 271
HinfI GANTC 4 cut(s) 211, 217, 290, 488
Hpy166II GTNNAC 1 cut(s) 381
Hpy188I TCNGA 7 cut(s) 176, 216, 229, 295, 487, 512, 679
Hpy188III TCNNGA 2 cut(s) 20, 140
Hpy8I GTNNAC 1 cut(s) 381
HpyAV CCTTC 3 cut(s) 63, 137, 633
HpyCH4III ACNGT 3 cut(s) 402, 442, 524
HpyCH4V TGCA 5 cut(s) 46, 254, 311, 423, 637
HpyF3I CTNAG 2 cut(s) 330, 415
Hsp92II CATG 2 cut(s) 173, 271
Kzo9I GATC 3 cut(s) 4, 583, 590
LpnPI CCDG 7 cut(s) 153, 174, 414, 441, 506, 561, 577
Lsp1109I GCAGC 2 cut(s) 238, 649
LweI GCATC 2 cut(s) 516, 624
MaeIII GTNAC 1 cut(s) 524
MalI GATC 3 cut(s) 6, 585, 592
MboI GATC 3 cut(s) 4, 583, 590
MboII GAAGA 3 cut(s) 251, 525, 666
MfeI CAATTG 1 cut(s) 66
MflI RGATCY 1 cut(s) 590
MhlI GDGCHC 1 cut(s) 364
MluCI AATT 4 cut(s) 15, 66, 192, 464
MlyI GAGTC 1 cut(s) 299
MmeI TCCRAC 2 cut(s) 221, 481
MnlI CCTC 5 cut(s) 22, 69, 161, 313, 316
MspR9I CCNGG 1 cut(s) 429
MunI CAATTG 1 cut(s) 66
MvaI CCWGG 1 cut(s) 429
NdeII GATC 3 cut(s) 4, 583, 590
NlaIII CATG 2 cut(s) 173, 271
NlaIV GGNNCC 1 cut(s) 361
NmuCI GTSAC 1 cut(s) 524
NspI RCATGY 1 cut(s) 173
PciI ACATGT 1 cut(s) 169
PfeI GAWTC 3 cut(s) 211, 217, 488
PflMI CCANNNNNTGG 1 cut(s) 371
PkrI GCNGC 2 cut(s) 253, 639
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
PscI ACATGT 1 cut(s) 169
Psp6I CCWGG 1 cut(s) 427
PspGI CCWGG 1 cut(s) 427
PspN4I GGNNCC 1 cut(s) 361
PsuI RGATCY 1 cut(s) 590
RsaI GTAC 2 cut(s) 234, 439
RsaNI GTAC 2 cut(s) 233, 438
SatI GCNGC 2 cut(s) 252, 638
Sau3AI GATC 3 cut(s) 4, 583, 590
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 1 cut(s) 429
SduI GDGCHC 1 cut(s) 364
SetI ASST 8 cut(s) 55, 153, 253, 327, 361, 421, 569, 652
SfaNI GCATC 2 cut(s) 516, 624
Sse9I AATT 4 cut(s) 15, 66, 192, 464
SsiI CCGC 1 cut(s) 122
StyD4I CCNGG 1 cut(s) 427
TaaI ACNGT 3 cut(s) 402, 442, 524
TaqI TCGA 1 cut(s) 7
TasI AATT 4 cut(s) 15, 66, 192, 464
TatI WGTACW 1 cut(s) 437
TfiI GAWTC 3 cut(s) 211, 217, 488
TscAI CASTG 1 cut(s) 529
TseFI GTSAC 1 cut(s) 524
TseI GCWGC 2 cut(s) 251, 637
Tsp45I GTSAC 1 cut(s) 524
TspDTI ATGAA 3 cut(s) 124, 591, 678
TspRI CASTG 1 cut(s) 529
Van91I CCANNNNNTGG 1 cut(s) 371
XapI RAATTY 2 cut(s) 15, 192
XceI RCATGY 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.