Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

6960244 .. 6964967

Gene Structure 4724 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG090000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGCCTCTGATCTCAAAGCAGAGTTATCCAAGGAAGCTCTTTTTGGGCTGAAGGTCTGGGAAGTGATTGGCATAGCTGTTGCGTTGTTTATCATAATAATCCTTACTGTCCTATCACTGTGCCTCACTTCGCGTAAGAAATCGAGAAAAGCTGGGGCCAAGATTCCCCATAGTCAAATCCCAACTGTCTCAAAAGAAATTAAGGAAGTTCGAGTGGAGCAAATAACAGCCAGTGAATTTGTTCCCCGTGATGGAATTCTTCTTACCATTCATGACAAATCCAGTGACAGAGAATCCGATAAGGTTATGGTCCATCTGGGTATGGGAAAATCAAAGAATGGAGACAATAGTAGTCAGTCAGGTTCATTTAATCATTTAGACAAAGATGGTGGAGGGTCTCAATCTGGAGAAGAAGGGAGTTCTGCCACGGGTACAGTGTATAAGCCTTCTTCATCGTATCCCGTAACTGCTCCATCTCCTCTAGTTGGTCTGCCTGAATTCTCGCACTTGGGTTGGGGCCACTGGTTTACATTAAGGGACCTTGAGCTTGCAACAAACAGGTTTTCAAAGGAAAATGTCCTTGGCGAGGGTGGATATGGAGTTGTCTACCGGGGAAATCTCATCAATGGGACTCCTGTCGCAGTTAAAAAGATCCTAAACAACCTTGGCCAAGCAGAGAAAGAATTTAGAGTGGAAGTTGAAGCAATTGGCCATGTGCGCCACAAGAATTTGGTTCGTCTCTTGGGATACTGCGTCGAAGGGACTCACAGGATGTTGGTCTATGAGTATGTCAACAATGGAAACTTGGAGCAGTGGCTTCATGGGGCTATGCGTCACCATGGATATCTCACTTGGGAAGCCCGTATAAAGGTTCTCCTTGGAACAGCAAAAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

298

Amino Acids

32.69

Weight (kDa)

9.04

Isoelectric Point (pI)

22.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	189 - 279	8e-14	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	190 - 292	9.4e-17	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	606
AccII	CGCG	1 cut(s)	133
AclWI	GGATC	1 cut(s)	646
AcoI	YGGCCR	2 cut(s)	667, 709
AcsI	RAATTY	5 cut(s)	236, 255, 497, 683, 727
AcuI	CTGAAG	1 cut(s)	71
AfaI	GTAC	1 cut(s)	433
AfiI	CCNNNNNNNGG	4 cut(s)	251, 485, 586, 868
AgsI	TTSAA	2 cut(s)	567, 701
AjuI	GAANNNNNNNTTGG	4 cut(s)	27, 59, 564, 596
AluBI	AGCT	4 cut(s)	38, 77, 152, 547
AluI	AGCT	4 cut(s)	38, 77, 152, 547
Alw26I	GTCTC	4 cut(s)	193, 336, 402, 743
AlwI	GGATC	1 cut(s)	646
AoxI	GGCC	5 cut(s)	3, 156, 517, 667, 709
ApoI	RAATTY	5 cut(s)	236, 255, 497, 683, 727
Asp700I	GAANNNNTTC	1 cut(s)	240
AspLEI	GCGC	1 cut(s)	720
AspS9I	GGNCC	4 cut(s)	156, 310, 517, 538
AsuC2I	CCSGG	1 cut(s)	611
AsuHPI	GGTGA	1 cut(s)	827
AvaII	GGWCC	2 cut(s)	310, 538
BalI	TGGCCA	2 cut(s)	669, 711
BccI	CCATC	4 cut(s)	245, 321, 380, 481
BciVI	GTATCC	2 cut(s)	468, 740
BcnI	CCSGG	1 cut(s)	611
BcoDI	GTCTC	4 cut(s)	193, 336, 402, 743
BfaI	CTAG	1 cut(s)	482
BfuI	GTATCC	2 cut(s)	468, 740
Bme1390I	CCNGG	1 cut(s)	611
Bme18I	GGWCC	2 cut(s)	310, 538
BmgT120I	GGNCC	4 cut(s)	156, 310, 517, 538
BmiI	GGNNCC	3 cut(s)	157, 518, 539
BmrFI	CCNGG	1 cut(s)	611
BoxI	GACNNNNGTC	1 cut(s)	635
BpmI	CTGGAG	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	563
BpuMI	CCSGG	1 cut(s)	611
BsaI	GGTCTC	1 cut(s)	402
BsaJI	CCNNGG	7 cut(s)	30, 426, 580, 610, 664, 838, 877
Bsc4I	CCNNNNNNNGG	4 cut(s)	251, 485, 586, 868
Bse1I	ACTGG	3 cut(s)	231, 282, 527
BseDI	CCNNGG	7 cut(s)	30, 426, 580, 610, 664, 838, 877
BseGI	GGATG	1 cut(s)	777
BseLI	CCNNNNNNNGG	4 cut(s)	251, 485, 586, 868
BseNI	ACTGG	3 cut(s)	231, 282, 527
BseRI	GAGGAG	1 cut(s)	468
BseYI	CCCAGC	1 cut(s)	152
Bsh1236I	CGCG	1 cut(s)	133
BshFI	GGCC	5 cut(s)	5, 158, 519, 669, 711
BsiSI	CCGG	1 cut(s)	610
BslFI	GGGAC	3 cut(s)	551, 643, 775
BslI	CCNNNNNNNGG	4 cut(s)	251, 485, 586, 868
BsmAI	GTCTC	4 cut(s)	193, 336, 402, 743
BsmBI	CGTCTC	1 cut(s)	743
BsmFI	GGGAC	3 cut(s)	551, 643, 775
BsnI	GGCC	5 cut(s)	5, 158, 519, 669, 711
Bso31I	GGTCTC	1 cut(s)	402
Bsp143I	GATC	2 cut(s)	10, 651
Bsp19I	CCATGG	1 cut(s)	838
BspANI	GGCC	5 cut(s)	5, 158, 519, 669, 711
BspFNI	CGCG	1 cut(s)	133
BspHI	TCATGA	1 cut(s)	271
BspLI	GGNNCC	3 cut(s)	157, 518, 539
BspPI	GGATC	1 cut(s)	646
BspTNI	GGTCTC	1 cut(s)	402
BsrI	ACTGG	3 cut(s)	231, 282, 527
BssECI	CCNNGG	7 cut(s)	30, 426, 580, 610, 664, 838, 877
BssMI	GATC	2 cut(s)	10, 651
BssT1I	CCWWGG	5 cut(s)	30, 580, 664, 838, 877
Bst4CI	ACNGT	4 cut(s)	109, 120, 187, 436
BstC8I	GCNNGC	1 cut(s)	549
BstDSI	CCRYGG	2 cut(s)	426, 838
BstENI	CCTNNNNNAGG	1 cut(s)	584
BstF5I	GGATG	1 cut(s)	777
BstFNI	CGCG	1 cut(s)	133
BstHHI	GCGC	1 cut(s)	720
BstKTI	GATC	2 cut(s)	13, 654
BstMAI	GTCTC	4 cut(s)	193, 336, 402, 743
BstMBI	GATC	2 cut(s)	10, 651
BstMWI	GCNNNNNNNGC	1 cut(s)	717
BstPAI	GACNNNNGTC	1 cut(s)	635
BstSCI	CCNGG	1 cut(s)	609
BstUI	CGCG	1 cut(s)	133
BstX2I	RGATCY	1 cut(s)	651
BstYI	RGATCY	1 cut(s)	651
BsuI	GTATCC	2 cut(s)	468, 740
BsuRI	GGCC	5 cut(s)	5, 158, 519, 669, 711
BtgI	CCRYGG	2 cut(s)	426, 838
BtsCI	GGATG	1 cut(s)	777
BtsI	GCAGTG	1 cut(s)	818
BtsIMutI	CAGTG	6 cut(s)	116, 238, 289, 441, 520, 818
Cac8I	GCNNGC	1 cut(s)	549
CciI	TCATGA	1 cut(s)	271
CfoI	GCGC	1 cut(s)	720
Cfr13I	GGNCC	4 cut(s)	156, 310, 517, 538
CseI	GACGC	2 cut(s)	742, 821
Csp6I	GTAC	1 cut(s)	432
CspCI	CAANNNNNGTGG	2 cut(s)	370, 405
CviAII	CATG	4 cut(s)	272, 713, 821, 839
CviQI	GTAC	1 cut(s)	432
DpnI	GATC	2 cut(s)	12, 653
DpnII	GATC	2 cut(s)	10, 651
EaeI	YGGCCR	2 cut(s)	667, 709
Eco130I	CCWWGG	5 cut(s)	30, 580, 664, 838, 877
Eco31I	GGTCTC	1 cut(s)	402
Eco32I	GATATC	1 cut(s)	845
Eco47I	GGWCC	2 cut(s)	310, 538
Eco57I	CTGAAG	1 cut(s)	71
EcoNI	CCTNNNNNAGG	1 cut(s)	584
EcoO109I	RGGNCCY	1 cut(s)	538
EcoRI	GAATTC	2 cut(s)	255, 497
EcoRV	GATATC	1 cut(s)	845
EcoT14I	CCWWGG	5 cut(s)	30, 580, 664, 838, 877
ErhI	CCWWGG	5 cut(s)	30, 580, 664, 838, 877
Esp3I	CGTCTC	1 cut(s)	743
FaeI	CATG	4 cut(s)	275, 716, 824, 842
FaqI	GGGAC	3 cut(s)	551, 643, 775
FatI	CATG	4 cut(s)	271, 712, 820, 838
FblI	GTMKAC	1 cut(s)	606
FokI	GGATG	1 cut(s)	784
FspBI	CTAG	1 cut(s)	482
GlaI	GCGC	1 cut(s)	719
GsaI	CCCAGC	1 cut(s)	156
GsuI	CTGGAG	1 cut(s)	426
HaeIII	GGCC	5 cut(s)	5, 158, 519, 669, 711
HapII	CCGG	1 cut(s)	610
HgaI	GACGC	2 cut(s)	742, 821
HhaI	GCGC	1 cut(s)	720
Hin1II	CATG	4 cut(s)	275, 716, 824, 842
Hin6I	GCGC	1 cut(s)	718
HinP1I	GCGC	1 cut(s)	718
HincII	GTYRAC	1 cut(s)	793
HindII	GTYRAC	1 cut(s)	793
HinfI	GANTC	4 cut(s)	163, 293, 631, 763
HpaII	CCGG	1 cut(s)	610
HphI	GGTGA	1 cut(s)	827
Hpy166II	GTNNAC	3 cut(s)	528, 607, 793
Hpy188I	TCNGA	2 cut(s)	10, 298
Hpy188III	TCNNGA	3 cut(s)	144, 272, 405
Hpy8I	GTNNAC	3 cut(s)	528, 607, 793
Hpy99I	CGWCG	1 cut(s)	758
HpyAV	CCTTC	4 cut(s)	46, 407, 456, 752
HpyCH4III	ACNGT	4 cut(s)	109, 120, 187, 436
HpyCH4V	TGCA	1 cut(s)	551
HpyF10VI	GCNNNNNNNGC	1 cut(s)	717
Hsp92II	CATG	4 cut(s)	275, 716, 824, 842
HspAI	GCGC	1 cut(s)	718
Kzo9I	GATC	2 cut(s)	10, 651
LmnI	GCTCC	3 cut(s)	217, 475, 808
MaeI	CTAG	1 cut(s)	482
MaeIII	GTNAC	3 cut(s)	284, 463, 833
MalI	GATC	2 cut(s)	12, 653
MboI	GATC	2 cut(s)	10, 651
MboII	GAAGA	3 cut(s)	251, 422, 441
MfeI	CAATTG	1 cut(s)	705
MflI	RGATCY	1 cut(s)	651
MlsI	TGGCCA	2 cut(s)	669, 711
MluCI	AATT	7 cut(s)	198, 236, 255, 497, 683, 705, 727
MluNI	TGGCCA	2 cut(s)	669, 711
MlyI	GAGTC	2 cut(s)	625, 757
MnlI	CCTC	5 cut(s)	16, 134, 386, 489, 580
Mox20I	TGGCCA	2 cut(s)	669, 711
MroXI	GAANNNNTTC	1 cut(s)	240
MscI	TGGCCA	2 cut(s)	669, 711
MseI	TTAA	4 cut(s)	201, 369, 533, 645
Msp20I	TGGCCA	2 cut(s)	669, 711
MspI	CCGG	1 cut(s)	610
MspR9I	CCNGG	1 cut(s)	611
MunI	CAATTG	1 cut(s)	705
MvnI	CGCG	1 cut(s)	133
MwoI	GCNNNNNNNGC	1 cut(s)	717
NciI	CCSGG	1 cut(s)	611
NcoI	CCATGG	1 cut(s)	838
NdeII	GATC	2 cut(s)	10, 651
NlaIII	CATG	4 cut(s)	275, 716, 824, 842
NlaIV	GGNNCC	3 cut(s)	157, 518, 539
NmuCI	GTSAC	2 cut(s)	284, 833
PagI	TCATGA	1 cut(s)	271
PdmI	GAANNNNTTC	1 cut(s)	240
PfeI	GAWTC	2 cut(s)	163, 293
PleI	GAGTC	2 cut(s)	625, 757
PpsI	GAGTC	2 cut(s)	625, 757
PpuMI	RGGWCCY	1 cut(s)	538
PshAI	GACNNNNGTC	1 cut(s)	635
Psp5II	RGGWCCY	1 cut(s)	538
PspFI	CCCAGC	1 cut(s)	152
PspN4I	GGNNCC	3 cut(s)	157, 518, 539
PspPI	GGNCC	4 cut(s)	156, 310, 517, 538
PspPPI	RGGWCCY	1 cut(s)	538
PsuI	RGATCY	1 cut(s)	651
RsaI	GTAC	1 cut(s)	433
RsaNI	GTAC	1 cut(s)	432
SaqAI	TTAA	4 cut(s)	201, 369, 533, 645
Sau3AI	GATC	2 cut(s)	10, 651
Sau96I	GGNCC	4 cut(s)	156, 310, 517, 538
SchI	GAGTC	2 cut(s)	625, 757
ScrFI	CCNGG	1 cut(s)	611
SinI	GGWCC	2 cut(s)	310, 538
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
Sse9I	AATT	7 cut(s)	198, 236, 255, 497, 683, 705, 727
SspMI	CTAG	1 cut(s)	482
StyD4I	CCNGG	1 cut(s)	609
StyI	CCWWGG	5 cut(s)	30, 580, 664, 838, 877
TaaI	ACNGT	4 cut(s)	109, 120, 187, 436
TaqI	TCGA	3 cut(s)	143, 211, 756
TasI	AATT	7 cut(s)	198, 236, 255, 497, 683, 705, 727
TfiI	GAWTC	2 cut(s)	163, 293
Tru1I	TTAA	4 cut(s)	201, 369, 533, 645
Tru9I	TTAA	4 cut(s)	201, 369, 533, 645
TscAI	CASTG	6 cut(s)	123, 238, 289, 441, 527, 818
TseFI	GTSAC	2 cut(s)	284, 833
Tsp45I	GTSAC	2 cut(s)	284, 833
TspDTI	ATGAA	4 cut(s)	260, 354, 441, 809
TspRI	CASTG	6 cut(s)	123, 238, 289, 441, 527, 818
VpaK11BI	GGWCC	2 cut(s)	310, 538
XagI	CCTNNNNNAGG	1 cut(s)	584
XapI	RAATTY	5 cut(s)	236, 255, 497, 683, 727
XmiI	GTMKAC	1 cut(s)	606
XmnI	GAANNNNTTC	1 cut(s)	240
XspI	CTAG	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.