Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

16163609 .. 16163908

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG183700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGCTTGAGCTTTTGACATCACAGAAAGCCATTGATTTCTCGCGTGGCGAAGATGATGTGAATCTAGTCATTTATGTGAGTGTAAGAGCCAGCAATGGTGCGATTATGGAAGTTGTGGATCAGCGGCTGCTTAGAGATAAAGAGCCTTCAGGGAATGTTGTGGGAAGTGTAAAGCTTTTCTTAGATCTTGCTCTTTCTTGTCTGAGGGAAAAGAAGGGAGATAGACCAACCATGAAGGATGTTGTTCAAGAACTGCAGTGCATAATCCAAAATTCAGATCAAGAAGTGCTTCATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

99

Amino Acids

11.09

Weight (kDa)

4.88

Isoelectric Point (pI)

27.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	43
AciI	CCGC	1 cut(s)	124
AclWI	GGATC	1 cut(s)	126
AcsI	RAATTY	1 cut(s)	271
AcuI	CTGAAG	1 cut(s)	132
AgsI	TTSAA	1 cut(s)	248
AluBI	AGCT	2 cut(s)	10, 175
AluI	AGCT	2 cut(s)	10, 175
AlwI	GGATC	1 cut(s)	126
AlwNI	CAGNNNCTG	1 cut(s)	127
ApeKI	GCWGC	1 cut(s)	127
ApoI	RAATTY	1 cut(s)	271
Asp700I	GAANNNNTTC	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	114
BfaI	CTAG	1 cut(s)	65
BfmI	CTRYAG	1 cut(s)	254
BglII	AGATCT	1 cut(s)	184
BisI	GCNGC	2 cut(s)	125, 128
BlsI	GCNGC	2 cut(s)	126, 129
BpuEI	CTTGAG	1 cut(s)	26
BsaBI	GATNNNNATC	1 cut(s)	60
Bse3DI	GCAATG	1 cut(s)	100
Bse8I	GATNNNNATC	1 cut(s)	60
BseGI	GGATG	1 cut(s)	244
BseJI	GATNNNNATC	1 cut(s)	60
BseMI	GCAATG	1 cut(s)	100
BseMII	CTCAG	1 cut(s)	194
BseXI	GCAGC	1 cut(s)	114
Bsh1236I	CGCG	1 cut(s)	43
Bsp143I	GATC	3 cut(s)	118, 184, 277
BspACI	CCGC	1 cut(s)	124
BspCNI	CTCAG	1 cut(s)	195
BspFNI	CGCG	1 cut(s)	43
BspMAI	CTGCAG	1 cut(s)	258
BspPI	GGATC	1 cut(s)	126
BsrDI	GCAATG	1 cut(s)	100
BssMI	GATC	3 cut(s)	118, 184, 277
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	3 cut(s)	131, 181, 203
BstF5I	GGATG	1 cut(s)	244
BstFNI	CGCG	1 cut(s)	43
BstKTI	GATC	3 cut(s)	121, 187, 280
BstMBI	GATC	3 cut(s)	118, 184, 277
BstSFI	CTRYAG	1 cut(s)	254
BstUI	CGCG	1 cut(s)	43
BstV1I	GCAGC	1 cut(s)	114
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BtsCI	GGATG	1 cut(s)	244
BtsI	GCAGTG	1 cut(s)	263
BtsIMutI	CAGTG	1 cut(s)	263
Cac8I	GCNNGC	1 cut(s)	91
CaiI	CAGNNNCTG	1 cut(s)	127
CviAII	CATG	1 cut(s)	232
CviJI	RGCY	6 cut(s)	10, 29, 89, 127, 145, 175
CviKI_1	RGCY	6 cut(s)	10, 29, 89, 127, 145, 175
DdeI	CTNAG	3 cut(s)	131, 181, 203
DpnI	GATC	3 cut(s)	120, 186, 279
DpnII	GATC	3 cut(s)	118, 184, 277
Eco57I	CTGAAG	1 cut(s)	132
FaeI	CATG	1 cut(s)	235
FaiI	YATR	5 cut(s)	75, 107, 233, 263, 294
FalI	AAGNNNNNCTT	3 cut(s)	164, 196, 273
FatI	CATG	1 cut(s)	231
Fnu4HI	GCNGC	2 cut(s)	125, 128
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	2 cut(s)	125, 128
FspBI	CTAG	1 cut(s)	65
GluI	GCNGC	2 cut(s)	125, 128
Hin1II	CATG	1 cut(s)	235
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	1 cut(s)	61
Hpy188I	TCNGA	2 cut(s)	204, 277
Hpy188III	TCNNGA	2 cut(s)	248, 281
HpyAV	CCTTC	3 cut(s)	156, 208, 229
HpyCH4V	TGCA	2 cut(s)	256, 261
HpyF3I	CTNAG	3 cut(s)	131, 181, 203
Hsp92II	CATG	1 cut(s)	235
Kzo9I	GATC	3 cut(s)	118, 184, 277
LpnPI	CCDG	2 cut(s)	103, 135
Lsp1109I	GCAGC	1 cut(s)	114
MaeI	CTAG	1 cut(s)	65
MalI	GATC	3 cut(s)	120, 186, 279
MboI	GATC	3 cut(s)	118, 184, 277
MboII	GAAGA	1 cut(s)	62
MflI	RGATCY	1 cut(s)	184
MluCI	AATT	2 cut(s)	271, 295
MnlI	CCTC	1 cut(s)	198
MroXI	GAANNNNTTC	1 cut(s)	288
MseI	TTAA	1 cut(s)	298
MslI	CAYNNNNRTG	1 cut(s)	74
MspA1I	CMGCKG	1 cut(s)	124
MvnI	CGCG	1 cut(s)	43
NdeII	GATC	3 cut(s)	118, 184, 277
NlaIII	CATG	1 cut(s)	235
PdmI	GAANNNNTTC	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	61
PkrI	GCNGC	2 cut(s)	126, 129
PstI	CTGCAG	1 cut(s)	258
PstNI	CAGNNNCTG	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	184
RseI	CAYNNNNRTG	1 cut(s)	74
SaqAI	TTAA	1 cut(s)	298
SatI	GCNGC	2 cut(s)	125, 128
Sau3AI	GATC	3 cut(s)	118, 184, 277
SetI	ASST	2 cut(s)	12, 177
SfcI	CTRYAG	1 cut(s)	254
SmiMI	CAYNNNNRTG	1 cut(s)	74
SmlI	CTYRAG	1 cut(s)	5
SmoI	CTYRAG	1 cut(s)	5
Sse9I	AATT	2 cut(s)	271, 295
SsiI	CCGC	1 cut(s)	124
SspMI	CTAG	1 cut(s)	65
TasI	AATT	2 cut(s)	271, 295
TauI	GCSGC	1 cut(s)	127
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	1 cut(s)	298
Tru9I	TTAA	1 cut(s)	298
TscAI	CASTG	1 cut(s)	263
TseI	GCWGC	1 cut(s)	127
TspDTI	ATGAA	2 cut(s)	248, 281
TspRI	CASTG	1 cut(s)	263
XapI	RAATTY	1 cut(s)	271
XmnI	GAANNNNTTC	1 cut(s)	288
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.