Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

16164604 .. 16165513

Gene Structure 910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG183800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGTAACCAAGGGAAACACAATACCAAGCCTACTGTGCAGCTGTCTCTTCATCCTTATTTGCCTAGATCATCTCTGCTCTTCCCAAAAGACTTGCCCGGACTGTGGCTCCCTTAAAGTCCCATATCCACTAAGCACAAACCCCGGCCGTTGTGGTGATCCGGACTACTCTCTCAAATGTGACCCCTTCTCTAAGAAACTCTATGTCCCTGCCCTTAATGGAAGTTACTATCTAGTGCTTCAAATTATGGCCTCGCACCAGCGTATGGTGGTACAACCATCCCCATGGCTGCCAGGAAATGAGTGTGTTACTCGAGACATGGTGGTGAGTGAAGGCCTCTGGTTAAACCAGTCACTTCCTTTCAACATCACTTCATCAAACACCATCTTTCTCTTCAACTGCTCTCCGCGGCTCTTGGTTTCTCCTCTGAATTGCACTCCCTCTAGTCTTTGTCACCGCTACTTGGAAAGCTCGGGGCATGTTGACACACAACGAGCACTCAAGTGTGAGAGCACCCTCAACCTTTGCTGCACATTTGTTGCTGGTGGAACACCTTCAGCATACAAGATTCGGCTTCACAGTTCAGGTTGCAAAGCCTTTAGAAGCATTCTTCATTTGGACGTAAACAAGCCTGTTGATCAATGGCAAGATGGATTGGAAGTTCAATGGGCTCCCCCACTTGAACCGGTTTGTAGTGCACAGCCTGATTGTTCTAGCACTTCTAAATGTTCACTTACTGCTACAAATGGCCGCTCTCGCTGCTTCTGCAACAAGGGGTACTACTGGGATCAAGTTCTAACAACTTGTGTGAAGAACAAGAGAAACACCAAAGCTAGCCTGAGTTTAAAGGTCTCAATTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

287

Amino Acids

31.59

Weight (kDa)

8.66

Isoelectric Point (pI)

46.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	32 - 91	4.3e-08	Wall-associated receptor kinase galacturonan-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	265
AccBSI	CCGCTC	1 cut(s)	753
AccII	CGCG	1 cut(s)	409
AccIII	TCCGGA	1 cut(s)	160
AciI	CCGC	4 cut(s)	407, 409, 457, 751
AclWI	GGATC	2 cut(s)	152, 795
AcoI	YGGCCR	2 cut(s)	145, 748
AcuI	CTGAAG	1 cut(s)	540
AfaI	GTAC	2 cut(s)	273, 779
AfiI	CCNNNNNNNGG	3 cut(s)	104, 265, 463
AgeI	ACCGGT	1 cut(s)	685
AgsI	TTSAA	5 cut(s)	242, 364, 397, 665, 683
AjnI	CCWGG	1 cut(s)	292
AleI	CACNNNNGTG	1 cut(s)	502
AloI	GAACNNNNNNTCC	2 cut(s)	645, 677
AluBI	AGCT	3 cut(s)	42, 471, 833
AluI	AGCT	3 cut(s)	42, 471, 833
Alw21I	GWGCWC	3 cut(s)	499, 515, 700
Alw26I	GTCTC	3 cut(s)	50, 309, 856
Alw44I	GTGCAC	1 cut(s)	696
AlwI	GGATC	2 cut(s)	152, 795
Ama87I	CYCGRG	2 cut(s)	312, 472
Aor13HI	TCCGGA	1 cut(s)	160
AoxI	GGCC	4 cut(s)	145, 249, 334, 748
ApaLI	GTGCAC	1 cut(s)	696
ApeKI	GCWGC	4 cut(s)	39, 289, 528, 759
AsiGI	ACCGGT	1 cut(s)	685
Asp700I	GAANNNNTTC	1 cut(s)	553
AsuC2I	CCSGG	2 cut(s)	98, 144
AsuHPI	GGTGA	3 cut(s)	167, 337, 446
AsuNHI	GCTAGC	1 cut(s)	833
AvaI	CYCGRG	2 cut(s)	312, 472
BaeGI	GKGCMC	1 cut(s)	700
BanII	GRGCYC	1 cut(s)	673
Bbv12I	GWGCWC	3 cut(s)	499, 515, 700
BbvI	GCAGC	4 cut(s)	51, 276, 515, 746
BccI	CCATC	3 cut(s)	286, 392, 644
BceAI	ACGGC	1 cut(s)	132
BciT130I	CCWGG	1 cut(s)	294
BclI	TGATCA	1 cut(s)	637
BcnI	CCSGG	2 cut(s)	98, 144
BcoDI	GTCTC	3 cut(s)	50, 309, 856
BfaI	CTAG	5 cut(s)	65, 233, 444, 714, 834
BisI	GCNGC	6 cut(s)	40, 290, 410, 529, 751, 760
BlsI	GCNGC	6 cut(s)	41, 291, 411, 530, 752, 761
Bme1390I	CCNGG	3 cut(s)	98, 144, 294
BmeT110I	CYCGRG	2 cut(s)	312, 472
BmiI	GGNNCC	2 cut(s)	109, 672
BmrFI	CCNGG	3 cut(s)	98, 144, 294
BmrI	ACTGGG	1 cut(s)	793
BmtI	GCTAGC	1 cut(s)	837
BmuI	ACTGGG	1 cut(s)	793
BpuEI	CTTGAG	1 cut(s)	485
BpuMI	CCSGG	2 cut(s)	98, 144
BsaI	GGTCTC	1 cut(s)	856
BsaJI	CCNNGG	4 cut(s)	9, 142, 284, 407
BsaWI	WCCGGW	2 cut(s)	160, 685
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	3 cut(s)	104, 265, 463
Bse118I	RCCGGY	1 cut(s)	685
Bse1I	ACTGG	2 cut(s)	349, 788
BseAI	TCCGGA	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	4 cut(s)	9, 142, 284, 407
BseGI	GGATG	2 cut(s)	51, 278
BseLI	CCNNNNNNNGG	3 cut(s)	104, 265, 463
BseMII	CTCAG	1 cut(s)	830
BseNI	ACTGG	2 cut(s)	349, 788
BseRI	GAGGAG	1 cut(s)	414
BseSI	GKGCMC	1 cut(s)	700
BseX3I	CGGCCG	1 cut(s)	145
BseXI	GCAGC	4 cut(s)	51, 276, 515, 746
BsgI	GTGCAG	2 cut(s)	58, 514
Bsh1236I	CGCG	1 cut(s)	409
Bsh1285I	CGRYCG	1 cut(s)	148
BshFI	GGCC	4 cut(s)	147, 251, 336, 750
BshTI	ACCGGT	1 cut(s)	685
BsiEI	CGRYCG	1 cut(s)	148
BsiHKAI	GWGCWC	3 cut(s)	499, 515, 700
BsiHKCI	CYCGRG	2 cut(s)	312, 472
BsiSI	CCGG	4 cut(s)	98, 144, 161, 686
BslFI	GGGAC	2 cut(s)	104, 191
BslI	CCNNNNNNNGG	3 cut(s)	104, 265, 463
BsmAI	GTCTC	3 cut(s)	50, 309, 856
BsmFI	GGGAC	2 cut(s)	104, 191
BsmI	GAATGC	1 cut(s)	606
BsnI	GGCC	4 cut(s)	147, 251, 336, 750
Bso31I	GGTCTC	1 cut(s)	856
BsoBI	CYCGRG	2 cut(s)	312, 472
Bsp1286I	GDGCHC	4 cut(s)	499, 515, 673, 700
Bsp13I	TCCGGA	1 cut(s)	160
Bsp143I	GATC	4 cut(s)	67, 157, 637, 787
Bsp19I	CCATGG	1 cut(s)	284
BspACI	CCGC	4 cut(s)	407, 409, 457, 751
BspANI	GGCC	4 cut(s)	147, 251, 336, 750
BspCNI	CTCAG	1 cut(s)	831
BspEI	TCCGGA	1 cut(s)	160
BspFNI	CGCG	1 cut(s)	409
BspLI	GGNNCC	2 cut(s)	109, 672
BspOI	GCTAGC	1 cut(s)	837
BspPI	GGATC	2 cut(s)	152, 795
BspQI	GCTCTTC	1 cut(s)	85
BspTNI	GGTCTC	1 cut(s)	856
BsrBI	CCGCTC	1 cut(s)	753
BsrFI	RCCGGY	1 cut(s)	685
BsrI	ACTGG	2 cut(s)	349, 788
BssAI	RCCGGY	1 cut(s)	685
BssECI	CCNNGG	4 cut(s)	9, 142, 284, 407
BssMI	GATC	4 cut(s)	67, 157, 637, 787
BssT1I	CCWWGG	2 cut(s)	9, 284
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	3 cut(s)	36, 104, 581
Bst6I	CTCTTC	3 cut(s)	53, 85, 398
BstC8I	GCNNGC	1 cut(s)	835
BstDEI	CTNAG	3 cut(s)	131, 192, 839
BstDSI	CCRYGG	2 cut(s)	284, 407
BstEII	GGTNACC	1 cut(s)	4
BstF5I	GGATG	2 cut(s)	51, 278
BstFNI	CGCG	1 cut(s)	409
BstKTI	GATC	4 cut(s)	70, 160, 640, 790
BstMAI	GTCTC	3 cut(s)	50, 309, 856
BstMBI	GATC	4 cut(s)	67, 157, 637, 787
BstMCI	CGRYCG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	4 cut(s)	36, 756, 759, 765
BstNI	CCWGG	1 cut(s)	294
BstNSI	RCATGY	1 cut(s)	482
BstPI	GGTNACC	1 cut(s)	4
BstSCI	CCNGG	3 cut(s)	96, 142, 292
BstSLI	GKGCMC	1 cut(s)	700
BstUI	CGCG	1 cut(s)	409
BstV1I	GCAGC	4 cut(s)	51, 276, 515, 746
BstXI	CCANNNNNNTGG	1 cut(s)	285
BstZI	CGGCCG	1 cut(s)	145
BsuRI	GGCC	4 cut(s)	147, 251, 336, 750
BtgI	CCRYGG	2 cut(s)	284, 407
BtsCI	GGATG	2 cut(s)	51, 278
Cac8I	GCNNGC	1 cut(s)	835
Cfr10I	RCCGGY	1 cut(s)	685
Cfr42I	CCGCGG	1 cut(s)	410
Csp6I	GTAC	2 cut(s)	272, 778
CspAI	ACCGGT	1 cut(s)	685
CviAII	CATG	3 cut(s)	285, 319, 479
CviQI	GTAC	2 cut(s)	272, 778
DdeI	CTNAG	3 cut(s)	131, 192, 839
DpnI	GATC	4 cut(s)	69, 159, 639, 789
DpnII	GATC	4 cut(s)	67, 157, 637, 787
DraI	TTTAAA	1 cut(s)	846
EaeI	YGGCCR	2 cut(s)	145, 748
EagI	CGGCCG	1 cut(s)	145
Eam1104I	CTCTTC	3 cut(s)	53, 85, 398
EarI	CTCTTC	3 cut(s)	53, 85, 398
EclXI	CGGCCG	1 cut(s)	145
Eco130I	CCWWGG	2 cut(s)	9, 284
Eco147I	AGGCCT	1 cut(s)	336
Eco24I	GRGCYC	1 cut(s)	673
Eco31I	GGTCTC	1 cut(s)	856
Eco52I	CGGCCG	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	540
Eco88I	CYCGRG	2 cut(s)	312, 472
Eco91I	GGTNACC	1 cut(s)	4
EcoO65I	GGTNACC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	292
EcoT14I	CCWWGG	2 cut(s)	9, 284
EcoT38I	GRGCYC	1 cut(s)	673
ErhI	CCWWGG	2 cut(s)	9, 284
FaeI	CATG	3 cut(s)	288, 322, 482
FaiI	YATR	8 cut(s)	124, 204, 248, 266, 286, 320, 480, 562
FaqI	GGGAC	2 cut(s)	104, 191
FatI	CATG	3 cut(s)	284, 318, 478
FbaI	TGATCA	1 cut(s)	637
Fnu4HI	GCNGC	6 cut(s)	40, 290, 410, 529, 751, 760
FokI	GGATG	2 cut(s)	38, 265
FriOI	GRGCYC	1 cut(s)	673
Fsp4HI	GCNGC	6 cut(s)	40, 290, 410, 529, 751, 760
FspBI	CTAG	5 cut(s)	65, 233, 444, 714, 834
GluI	GCNGC	6 cut(s)	40, 290, 410, 529, 751, 760
HaeIII	GGCC	4 cut(s)	147, 251, 336, 750
HapII	CCGG	4 cut(s)	98, 144, 161, 686
Hin1II	CATG	3 cut(s)	288, 322, 482
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	1 cut(s)	568
HpaII	CCGG	4 cut(s)	98, 144, 161, 686
HphI	GGTGA	3 cut(s)	167, 337, 446
Hpy166II	GTNNAC	4 cut(s)	484, 625, 698, 731
Hpy188I	TCNGA	1 cut(s)	429
Hpy188III	TCNNGA	2 cut(s)	161, 314
Hpy8I	GTNNAC	4 cut(s)	484, 625, 698, 731
HpyAV	CCTTC	3 cut(s)	196, 326, 564
HpyCH4III	ACNGT	3 cut(s)	36, 104, 581
HpyCH4IV	ACGT	1 cut(s)	621
HpyCH4V	TGCA	6 cut(s)	39, 435, 531, 591, 698, 768
HpyF10VI	GCNNNNNNNGC	4 cut(s)	36, 756, 759, 765
HpyF3I	CTNAG	3 cut(s)	131, 192, 839
HpySE526I	ACGT	1 cut(s)	621
Hsp92II	CATG	3 cut(s)	288, 322, 482
Kpn2I	TCCGGA	1 cut(s)	160
Ksp22I	TGATCA	1 cut(s)	637
KspI	CCGCGG	1 cut(s)	410
Kzo9I	GATC	4 cut(s)	67, 157, 637, 787
LguI	GCTCTTC	1 cut(s)	85
LmnI	GCTCC	2 cut(s)	113, 676
Lsp1109I	GCAGC	4 cut(s)	51, 276, 515, 746
MaeI	CTAG	5 cut(s)	65, 233, 444, 714, 834
MaeII	ACGT	1 cut(s)	621
MaeIII	GTNAC	6 cut(s)	4, 179, 224, 307, 351, 452
MalI	GATC	4 cut(s)	69, 159, 639, 789
MbiI	CCGCTC	1 cut(s)	753
MboI	GATC	4 cut(s)	67, 157, 637, 787
MboII	GAAGA	5 cut(s)	40, 72, 385, 602, 823
MfeI	CAATTG	1 cut(s)	855
MhlI	GDGCHC	4 cut(s)	499, 515, 673, 700
MluCI	AATT	3 cut(s)	243, 430, 855
MnlI	CCTC	5 cut(s)	262, 347, 435, 451, 527
MroI	TCCGGA	1 cut(s)	160
MroXI	GAANNNNTTC	1 cut(s)	553
MseI	TTAA	4 cut(s)	114, 216, 344, 845
MslI	CAYNNNNRTG	3 cut(s)	283, 323, 502
MspA1I	CMGCKG	2 cut(s)	42, 409
MspI	CCGG	4 cut(s)	98, 144, 161, 686
MspR9I	CCNGG	3 cut(s)	98, 144, 294
MunI	CAATTG	1 cut(s)	855
Mva1269I	GAATGC	1 cut(s)	606
MvaI	CCWGG	1 cut(s)	294
MvnI	CGCG	1 cut(s)	409
MwoI	GCNNNNNNNGC	4 cut(s)	36, 756, 759, 765
NciI	CCSGG	2 cut(s)	98, 144
NcoI	CCATGG	1 cut(s)	284
NdeII	GATC	4 cut(s)	67, 157, 637, 787
NheI	GCTAGC	1 cut(s)	833
NlaIII	CATG	3 cut(s)	288, 322, 482
NlaIV	GGNNCC	2 cut(s)	109, 672
NmuCI	GTSAC	3 cut(s)	179, 351, 452
NspI	RCATGY	1 cut(s)	482
OliI	CACNNNNGTG	1 cut(s)	502
PaeR7I	CTCGAG	1 cut(s)	312
PceI	AGGCCT	1 cut(s)	336
PciSI	GCTCTTC	1 cut(s)	85
PctI	GAATGC	1 cut(s)	606
PdmI	GAANNNNTTC	1 cut(s)	553
PfeI	GAWTC	1 cut(s)	568
PflMI	CCANNNNNTGG	1 cut(s)	265
PinAI	ACCGGT	1 cut(s)	685
PkrI	GCNGC	6 cut(s)	41, 291, 411, 530, 752, 761
Psp6I	CCWGG	1 cut(s)	292
PspEI	GGTNACC	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	2 cut(s)	109, 672
PvuII	CAGCTG	1 cut(s)	42
RsaI	GTAC	2 cut(s)	273, 779
RsaNI	GTAC	2 cut(s)	272, 778
RseI	CAYNNNNRTG	3 cut(s)	283, 323, 502
SacII	CCGCGG	1 cut(s)	410
SapI	GCTCTTC	1 cut(s)	85
SaqAI	TTAA	4 cut(s)	114, 216, 344, 845
SatI	GCNGC	6 cut(s)	40, 290, 410, 529, 751, 760
Sau3AI	GATC	4 cut(s)	67, 157, 637, 787
ScrFI	CCNGG	3 cut(s)	98, 144, 294
SduI	GDGCHC	4 cut(s)	499, 515, 673, 700
SetI	ASST	8 cut(s)	44, 473, 525, 556, 589, 624, 835, 852
Sfr274I	CTCGAG	1 cut(s)	312
Sfr303I	CCGCGG	1 cut(s)	410
SgrBI	CCGCGG	1 cut(s)	410
SlaI	CTCGAG	1 cut(s)	312
SmiMI	CAYNNNNRTG	3 cut(s)	283, 323, 502
SmlI	CTYRAG	2 cut(s)	312, 500
SmoI	CTYRAG	2 cut(s)	312, 500
Sse9I	AATT	3 cut(s)	243, 430, 855
SseBI	AGGCCT	1 cut(s)	336
SsiI	CCGC	4 cut(s)	407, 409, 457, 751
SspMI	CTAG	5 cut(s)	65, 233, 444, 714, 834
StuI	AGGCCT	1 cut(s)	336
StyD4I	CCNGG	3 cut(s)	96, 142, 292
StyI	CCWWGG	2 cut(s)	9, 284
TaaI	ACNGT	3 cut(s)	36, 104, 581
TaiI	ACGT	1 cut(s)	624
TaqI	TCGA	1 cut(s)	313
TasI	AATT	3 cut(s)	243, 430, 855
TauI	GCSGC	2 cut(s)	412, 753
TfiI	GAWTC	1 cut(s)	568
Tru1I	TTAA	4 cut(s)	114, 216, 344, 845
Tru9I	TTAA	4 cut(s)	114, 216, 344, 845
TseFI	GTSAC	3 cut(s)	179, 351, 452
TseI	GCWGC	4 cut(s)	39, 289, 528, 759
Tsp45I	GTSAC	3 cut(s)	179, 351, 452
TspDTI	ATGAA	3 cut(s)	40, 363, 602
Van91I	CCANNNNNTGG	1 cut(s)	265
VneI	GTGCAC	1 cut(s)	696
XceI	RCATGY	1 cut(s)	482
XhoI	CTCGAG	1 cut(s)	312
XmnI	GAANNNNTTC	1 cut(s)	553
XspI	CTAG	5 cut(s)	65, 233, 444, 714, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.