Rh3CG242800

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
N/A
Physical Location & Seq
Forward (+)
23227853 .. 23274935
47083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG242800.1

Sequence Viewer

Length: 1092 bp
ATGCAGATTTTCGTGAAAACTCTAACTGGGAAGACCATCACTCTCGAGGTTGAGAGCAGCGACACCATCGATAATGTCAAAGCTAAGATCCAGCTTACAGAGTTAAATCTTGATCATCTAAACCTATCAGCTGAGGGATCTCATTGGAGCCAAGCCATATCATCTTCACTTCCAAAGCTGAGTCTGTTGACCTTGTCCAATTGTGATCTTTCAGGCCCTATTCATGAATCATTGGCCAGGCTTCATTCTCTATCCATGTTAGTATTGGATGACAACTACATCTCTGGTCCGGTTCCAAAATCCTTTGCCAATTTTTCAAGCTTGATTTCCTTGAGTCTCTCTGCTTGTAACTTGTCTGAAGCATTTCCCAAAGAGATATTCCAGATACCTTCACTACAGTCTGTTGACCTATCAGATAATTCAGAGCTTCGTGGTTCCTTACCGGAGTTTCCAAAGAATGGATCTCTCGAATCCCTAGTTTTATCCCGGACTAAGTTTTCAGGAGTCTTGCCGGACTCTATGGGCAACCTTGAAATGCTGTTTGAATTAGATCTTTCAGATTGCAATTTCACAGGAGCAGTTCCAAAGTCACTGGAAAACCTAACACAATTGGGGTCTTTGGACTTGTCATCCAACAAGTTTTCTAGTCCGATTAATTCTATTCAATGGGACAAACTCATCAAGCTTGAGCTTCTGGACTTGGCCAACAATCTACTCTACGGGGTTATTCCATTGTCTCCCTTTTCTATTCCCTTGCTGCAGAGGTTAGATCTTTCTGGAAATCACTTCTCTGGTCAGTTGCTTGAATTTTCTAATGTCTCTCTTCAGCTGCACTCCCTTGATTTGAGTAGCAACAATTTGGAAGGATCAATACCCGTGTCTAACCTTCATCTTCTAATGCTTGATTACTTTAATCTTTCTTGGAACAACTTGAGTGGTTTTCTAGAGTCGAGAAATCTTTCGGAATTTCATCTATCCGACTCATCTATCTATCAGCGTAAACCCCTGACGTTGGACCTTTCAAACAACCAGATTCCAGTTCATCTCGTCTATACATTTTCCAAGGACCGTCTGAGTTTATGCCACCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

363

Amino Acids

40.08

Weight (kDa)

4.93

Isoelectric Point (pI)

31.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 3 - 31 4.1e-07 Ubiquitin family
LRR_8 PF13855 83 - 140 6.3e-07 Leucine rich repeat
LRR_14 PF23598 108 - 233 8.9e-06 Leucine-rich repeat region
LRR_8 PF13855 155 - 214 1.2e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 458
AclWI GGATC 4 cut(s) 82, 145, 469, 874
AcoI YGGCCR 2 cut(s) 234, 702
AcsI RAATTY 2 cut(s) 806, 965
AcuI CTGAAG 2 cut(s) 378, 809
AfiI CCNNNNNNNGG 2 cut(s) 458, 1012
AgsI TTSAA 6 cut(s) 318, 533, 545, 665, 806, 1023
AjnI CCWGG 1 cut(s) 236
AjuI GAANNNNNNNTTGG 2 cut(s) 362, 394
AluBI AGCT 9 cut(s) 83, 94, 131, 178, 321, 427, 685, 691, 829
AluI AGCT 9 cut(s) 83, 94, 131, 178, 321, 427, 685, 691, 829
Alw26I GTCTC 3 cut(s) 341, 741, 823
AlwI GGATC 4 cut(s) 82, 145, 469, 874
Ama87I CYCGRG 1 cut(s) 44
AoxI GGCC 3 cut(s) 214, 234, 702
ApeKI GCWGC 3 cut(s) 57, 757, 829
ApoI RAATTY 2 cut(s) 806, 965
AseI ATTAAT 1 cut(s) 654
Asp700I GAANNNNTTC 2 cut(s) 363, 958
AspS9I GGNCC 4 cut(s) 215, 287, 1015, 1066
AsuC2I CCSGG 1 cut(s) 487
AvaI CYCGRG 1 cut(s) 44
AvaII GGWCC 3 cut(s) 287, 1015, 1066
BalI TGGCCA 2 cut(s) 236, 704
BarI GAAGNNNNNNTAC 2 cut(s) 855, 887
BbsI GAAGAC 1 cut(s) 38
BbvCI CCTCAGC 1 cut(s) 132
BbvI GCAGC 3 cut(s) 69, 744, 816
BccI CCATC 2 cut(s) 44, 74
BciT130I CCWGG 1 cut(s) 238
BclI TGATCA 1 cut(s) 112
BcnI CCSGG 1 cut(s) 487
BcoDI GTCTC 3 cut(s) 341, 741, 823
BfaI CTAG 3 cut(s) 476, 645, 944
BfmI CTRYAG 2 cut(s) 395, 758
BglII AGATCT 2 cut(s) 550, 769
BisI GCNGC 3 cut(s) 58, 758, 830
BlsI GCNGC 3 cut(s) 59, 759, 831
Bme1390I CCNGG 2 cut(s) 238, 487
Bme18I GGWCC 3 cut(s) 287, 1015, 1066
BmeT110I CYCGRG 1 cut(s) 44
BmgT120I GGNCC 4 cut(s) 215, 287, 1015, 1066
BmiI GGNNCC 3 cut(s) 149, 294, 436
BmrFI CCNGG 2 cut(s) 238, 487
BmrI ACTGGG 1 cut(s) 36
BmuI ACTGGG 1 cut(s) 36
BpiI GAAGAC 1 cut(s) 38
Bpu10I CCTNAGC 1 cut(s) 132
BpuEI CTTGAG 3 cut(s) 352, 707, 952
BpuMI CCSGG 1 cut(s) 487
Bsa29I ATCGAT 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 1062
BsaWI WCCGGW 2 cut(s) 289, 442
Bsc4I CCNNNNNNNGG 2 cut(s) 458, 1012
Bse1I ACTGG 4 cut(s) 31, 597, 1037, 1087
BseBI CCWGG 1 cut(s) 238
BseCI ATCGAT 1 cut(s) 69
BseDI CCNNGG 1 cut(s) 1062
BseGI GGATG 2 cut(s) 274, 629
BseLI CCNNNNNNNGG 2 cut(s) 458, 1012
BseMII CTCAG 3 cut(s) 123, 170, 1064
BseNI ACTGG 4 cut(s) 31, 597, 1037, 1087
BseXI GCAGC 3 cut(s) 69, 744, 816
BsgI GTGCAG 1 cut(s) 815
BshFI GGCC 3 cut(s) 216, 236, 704
BshVI ATCGAT 1 cut(s) 69
BsiHKCI CYCGRG 1 cut(s) 44
BsiSI CCGG 4 cut(s) 290, 443, 487, 512
BslFI GGGAC 1 cut(s) 683
BslI CCNNNNNNNGG 2 cut(s) 458, 1012
BsmAI GTCTC 3 cut(s) 341, 741, 823
BsmFI GGGAC 1 cut(s) 683
BsnI GGCC 3 cut(s) 216, 236, 704
BsoBI CYCGRG 1 cut(s) 44
Bsp143I GATC 8 cut(s) 87, 112, 137, 205, 461, 550, 769, 866
BspANI GGCC 3 cut(s) 216, 236, 704
BspCNI CTCAG 3 cut(s) 124, 171, 1065
BspDI ATCGAT 1 cut(s) 69
BspHI TCATGA 1 cut(s) 223
BspLI GGNNCC 3 cut(s) 149, 294, 436
BspMAI CTGCAG 1 cut(s) 762
BspPI GGATC 4 cut(s) 82, 145, 469, 874
BsrI ACTGG 4 cut(s) 31, 597, 1037, 1087
BssECI CCNNGG 1 cut(s) 1062
BssMI GATC 8 cut(s) 87, 112, 137, 205, 461, 550, 769, 866
BssT1I CCWWGG 1 cut(s) 1062
Bst2UI CCWGG 1 cut(s) 238
Bst4CI ACNGT 2 cut(s) 399, 1070
Bst6I CTCTTC 1 cut(s) 828
BstDEI CTNAG 5 cut(s) 84, 132, 179, 492, 1073
BstF5I GGATG 2 cut(s) 274, 629
BstKTI GATC 8 cut(s) 90, 115, 140, 208, 464, 553, 772, 869
BstMAI GTCTC 3 cut(s) 341, 741, 823
BstMBI GATC 8 cut(s) 87, 112, 137, 205, 461, 550, 769, 866
BstNI CCWGG 1 cut(s) 238
BstSCI CCNGG 2 cut(s) 236, 485
BstSFI CTRYAG 2 cut(s) 395, 758
BstV1I GCAGC 3 cut(s) 69, 744, 816
BstV2I GAAGAC 1 cut(s) 38
BstX2I RGATCY 5 cut(s) 87, 137, 461, 550, 769
BstYI RGATCY 5 cut(s) 87, 137, 461, 550, 769
Bsu15I ATCGAT 1 cut(s) 69
BsuRI GGCC 3 cut(s) 216, 236, 704
BsuTUI ATCGAT 1 cut(s) 69
BtsCI GGATG 2 cut(s) 274, 629
BtsIMutI CAGTG 1 cut(s) 590
CciI TCATGA 1 cut(s) 223
Cfr13I GGNCC 4 cut(s) 215, 287, 1015, 1066
ClaI ATCGAT 1 cut(s) 69
CspCI CAANNNNNGTGG 2 cut(s) 916, 951
CviAII CATG 2 cut(s) 224, 256
DdeI CTNAG 5 cut(s) 84, 132, 179, 492, 1073
DpnI GATC 8 cut(s) 89, 114, 139, 207, 463, 552, 771, 868
DpnII GATC 8 cut(s) 87, 112, 137, 205, 461, 550, 769, 866
EaeI YGGCCR 2 cut(s) 234, 702
Eam1104I CTCTTC 1 cut(s) 828
EarI CTCTTC 1 cut(s) 828
Eco130I CCWWGG 1 cut(s) 1062
Eco47I GGWCC 3 cut(s) 287, 1015, 1066
Eco57I CTGAAG 2 cut(s) 378, 809
Eco88I CYCGRG 1 cut(s) 44
EcoO109I RGGNCCY 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 1062
ErhI CCWWGG 1 cut(s) 1062
FaeI CATG 2 cut(s) 227, 259
FaiI YATR 6 cut(s) 158, 225, 257, 521, 1053, 1081
FaqI GGGAC 1 cut(s) 683
FatI CATG 2 cut(s) 223, 255
FbaI TGATCA 1 cut(s) 112
Fnu4HI GCNGC 3 cut(s) 58, 758, 830
FokI GGATG 2 cut(s) 281, 616
Fsp4HI GCNGC 3 cut(s) 58, 758, 830
FspBI CTAG 3 cut(s) 476, 645, 944
GluI GCNGC 3 cut(s) 58, 758, 830
HaeIII GGCC 3 cut(s) 216, 236, 704
HapII CCGG 4 cut(s) 290, 443, 487, 512
Hin1II CATG 2 cut(s) 227, 259
HincII GTYRAC 2 cut(s) 189, 406
HindII GTYRAC 2 cut(s) 189, 406
HindIII AAGCTT 2 cut(s) 319, 683
HinfI GANTC 9 cut(s) 181, 227, 334, 470, 504, 515, 947, 980, 1033
HpaII CCGG 4 cut(s) 290, 443, 487, 512
Hpy166II GTNNAC 3 cut(s) 189, 406, 1001
Hpy188I TCNGA 8 cut(s) 358, 415, 424, 559, 651, 964, 979, 1074
Hpy8I GTNNAC 3 cut(s) 189, 406, 1001
HpyAV CCTTC 3 cut(s) 399, 857, 896
HpyCH4III ACNGT 2 cut(s) 399, 1070
HpyCH4IV ACGT 1 cut(s) 1010
HpyCH4V TGCA 4 cut(s) 4, 564, 760, 832
HpyF3I CTNAG 5 cut(s) 84, 132, 179, 492, 1073
HpySE526I ACGT 1 cut(s) 1010
Hsp92II CATG 2 cut(s) 227, 259
Ksp22I TGATCA 1 cut(s) 112
Kzo9I GATC 8 cut(s) 87, 112, 137, 205, 461, 550, 769, 866
LmnI GCTCC 2 cut(s) 147, 575
Lsp1109I GCAGC 3 cut(s) 69, 744, 816
MaeI CTAG 3 cut(s) 476, 645, 944
MaeII ACGT 1 cut(s) 1010
MaeIII GTNAC 2 cut(s) 347, 588
MalI GATC 8 cut(s) 89, 114, 139, 207, 463, 552, 771, 868
MboI GATC 8 cut(s) 87, 112, 137, 205, 461, 550, 769, 866
MboII GAAGA 4 cut(s) 43, 156, 815, 884
MfeI CAATTG 2 cut(s) 199, 608
MflI RGATCY 5 cut(s) 87, 137, 461, 550, 769
MlsI TGGCCA 2 cut(s) 236, 704
MluNI TGGCCA 2 cut(s) 236, 704
MlyI GAGTC 6 cut(s) 190, 343, 509, 513, 956, 974
MmeI TCCRAC 3 cut(s) 657, 993, 1002
MnlI CCTC 3 cut(s) 40, 127, 756
Mox20I TGGCCA 2 cut(s) 236, 704
MroXI GAANNNNTTC 2 cut(s) 363, 958
MscI TGGCCA 2 cut(s) 236, 704
MseI TTAA 3 cut(s) 104, 654, 912
Msp20I TGGCCA 2 cut(s) 236, 704
MspA1I CMGCKG 2 cut(s) 131, 829
MspI CCGG 4 cut(s) 290, 443, 487, 512
MspR9I CCNGG 2 cut(s) 238, 487
MunI CAATTG 2 cut(s) 199, 608
MvaI CCWGG 1 cut(s) 238
NciI CCSGG 1 cut(s) 487
NdeII GATC 8 cut(s) 87, 112, 137, 205, 461, 550, 769, 866
NlaIII CATG 2 cut(s) 227, 259
NlaIV GGNNCC 3 cut(s) 149, 294, 436
NmuCI GTSAC 1 cut(s) 588
PaeR7I CTCGAG 1 cut(s) 44
PagI TCATGA 1 cut(s) 223
PdmI GAANNNNTTC 2 cut(s) 363, 958
PfeI GAWTC 3 cut(s) 227, 470, 1033
PflFI GACNNNGTC 1 cut(s) 193
PflMI CCANNNNNTGG 1 cut(s) 458
PfoI TCCNGGA 1 cut(s) 485
PkrI GCNGC 3 cut(s) 59, 759, 831
PleI GAGTC 6 cut(s) 189, 342, 509, 512, 955, 974
PpsI GAGTC 6 cut(s) 189, 342, 509, 512, 955, 974
PshBI ATTAAT 1 cut(s) 654
Psp6I CCWGG 1 cut(s) 236
PspGI CCWGG 1 cut(s) 236
PspN4I GGNNCC 3 cut(s) 149, 294, 436
PspPI GGNCC 4 cut(s) 215, 287, 1015, 1066
PstI CTGCAG 1 cut(s) 762
PsuI RGATCY 5 cut(s) 87, 137, 461, 550, 769
PsyI GACNNNGTC 1 cut(s) 193
PvuII CAGCTG 2 cut(s) 131, 829
SaqAI TTAA 3 cut(s) 104, 654, 912
SatI GCNGC 3 cut(s) 58, 758, 830
Sau3AI GATC 8 cut(s) 87, 112, 137, 205, 461, 550, 769, 866
Sau96I GGNCC 4 cut(s) 215, 287, 1015, 1066
SchI GAGTC 6 cut(s) 190, 343, 509, 513, 956, 974
ScrFI CCNGG 2 cut(s) 238, 487
SfcI CTRYAG 2 cut(s) 395, 758
Sfr274I CTCGAG 1 cut(s) 44
SinI GGWCC 3 cut(s) 287, 1015, 1066
SlaI CTCGAG 1 cut(s) 44
SmlI CTYRAG 4 cut(s) 44, 331, 686, 931
SmoI CTYRAG 4 cut(s) 44, 331, 686, 931
SspMI CTAG 3 cut(s) 476, 645, 944
StyD4I CCNGG 2 cut(s) 236, 485
StyI CCWWGG 1 cut(s) 1062
TaaI ACNGT 2 cut(s) 399, 1070
TaiI ACGT 1 cut(s) 1013
TaqI TCGA 4 cut(s) 45, 69, 468, 950
TfiI GAWTC 3 cut(s) 227, 470, 1033
Tru1I TTAA 3 cut(s) 104, 654, 912
Tru9I TTAA 3 cut(s) 104, 654, 912
TscAI CASTG 1 cut(s) 597
TseFI GTSAC 1 cut(s) 588
TseI GCWGC 3 cut(s) 57, 757, 829
Tsp45I GTSAC 1 cut(s) 588
TspDTI ATGAA 6 cut(s) 212, 233, 240, 878, 959, 1031
TspRI CASTG 1 cut(s) 597
Tth111I GACNNNGTC 1 cut(s) 193
Van91I CCANNNNNTGG 1 cut(s) 458
VpaK11BI GGWCC 3 cut(s) 287, 1015, 1066
VspI ATTAAT 1 cut(s) 654
XapI RAATTY 2 cut(s) 806, 965
XbaI TCTAGA 1 cut(s) 943
XcmI CCANNNNNNNNNTGG 1 cut(s) 262
XhoI CTCGAG 1 cut(s) 44
XmnI GAANNNNTTC 2 cut(s) 363, 958
XspI CTAG 3 cut(s) 476, 645, 944
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.