Rh3CG243800

receptor-like protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
N/A
Physical Location & Seq
Forward (+)
23370965 .. 23388444
17480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG243800.1

Sequence Viewer

Length: 450 bp
ATGCAGATTTTCGTGACAACTCTAACTGGGAAGAACATCACTCTTGAGGTTGAGAGCAGCGACACCATCGATAATGTCAAAGCCAAGATCCGGATTGGCCACTTGGTATTGGCTTCTAACCAGTTGAGAGCATTCCCAGATTTCTTGAGAAATCAGTCCATGTTAGACTACTTGGACCTTTCAAACAACCAAATTCAAGGCAAGATACCTAATTGGATTTTGAGTCTCAAAACTCTTAATTCCCTTGATCTTTCTGGCAACTTCTTGGCAAGTCTTGAAGCTCCTCTTCCTAATTCAACTTCTACTTTATCTTCTTTGGACCTTCATTCCAACAAGCTTAAAGTGGATGCAGTATTGCCACCACCAATTTCAAATGGAAACTCAAGTCATCCGAATTCTGGGGATGAGATTGATTGGGATGGAGGGTCATGGAATCCCACTGAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

149

Amino Acids

16.3

Weight (kDa)

4.99

Isoelectric Point (pI)

23.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 3 - 31 4.3e-06 Ubiquitin family
LRR_8 PF13855 34 - 87 5.1e-07 Leucine rich repeat
LRR_4 PF12799 55 - 93 3.8e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 90
AclWI GGATC 1 cut(s) 82
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 2 cut(s) 192, 394
AfiI CCNNNNNNNGG 2 cut(s) 90, 398
AgsI TTSAA 5 cut(s) 183, 197, 278, 297, 372
AluBI AGCT 2 cut(s) 281, 337
AluI AGCT 2 cut(s) 281, 337
Alw26I GTCTC 1 cut(s) 230
AlwI GGATC 1 cut(s) 82
Aor13HI TCCGGA 1 cut(s) 90
AoxI GGCC 1 cut(s) 97
ApeKI GCWGC 1 cut(s) 57
ApoI RAATTY 2 cut(s) 192, 394
AspS9I GGNCC 2 cut(s) 175, 319
AvaII GGWCC 2 cut(s) 175, 319
BalI TGGCCA 1 cut(s) 99
BbvI GCAGC 1 cut(s) 69
BccI CCATC 2 cut(s) 74, 413
BcoDI GTCTC 1 cut(s) 230
BisI GCNGC 1 cut(s) 58
BlsI GCNGC 1 cut(s) 59
Bme18I GGWCC 2 cut(s) 175, 319
BmgT120I GGNCC 2 cut(s) 175, 319
BmrI ACTGGG 1 cut(s) 36
BmsI GCATC 1 cut(s) 337
BmuI ACTGGG 1 cut(s) 36
BpuEI CTTGAG 3 cut(s) 65, 166, 367
Bsa29I ATCGAT 1 cut(s) 69
BsaWI WCCGGW 1 cut(s) 90
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 398
Bse1I ACTGG 2 cut(s) 31, 121
BseAI TCCGGA 1 cut(s) 90
BseCI ATCGAT 1 cut(s) 69
BseGI GGATG 4 cut(s) 352, 388, 409, 424
BseLI CCNNNNNNNGG 2 cut(s) 90, 398
BseMII CTCAG 1 cut(s) 432
BseNI ACTGG 2 cut(s) 31, 121
BseRI GAGGAG 1 cut(s) 273
BseXI GCAGC 1 cut(s) 69
BshFI GGCC 1 cut(s) 99
BshVI ATCGAT 1 cut(s) 69
BsiSI CCGG 1 cut(s) 91
BslI CCNNNNNNNGG 2 cut(s) 90, 398
BsmAI GTCTC 1 cut(s) 230
BsmI GAATGC 1 cut(s) 131
BsnI GGCC 1 cut(s) 99
Bsp13I TCCGGA 1 cut(s) 90
Bsp143I GATC 2 cut(s) 87, 247
BspANI GGCC 1 cut(s) 99
BspCNI CTCAG 1 cut(s) 433
BspDI ATCGAT 1 cut(s) 69
BspEI TCCGGA 1 cut(s) 90
BspPI GGATC 1 cut(s) 82
BsrI ACTGG 2 cut(s) 31, 121
BssMI GATC 2 cut(s) 87, 247
Bst6I CTCTTC 1 cut(s) 291
BstDEI CTNAG 1 cut(s) 441
BstF5I GGATG 4 cut(s) 352, 388, 409, 424
BstKTI GATC 2 cut(s) 90, 250
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 2 cut(s) 87, 247
BstV1I GCAGC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 87
BstYI RGATCY 1 cut(s) 87
Bsu15I ATCGAT 1 cut(s) 69
BsuRI GGCC 1 cut(s) 99
BsuTUI ATCGAT 1 cut(s) 69
BtsCI GGATG 4 cut(s) 352, 388, 409, 424
BtsIMutI CAGTG 1 cut(s) 438
Cfr13I GGNCC 2 cut(s) 175, 319
ClaI ATCGAT 1 cut(s) 69
CviAII CATG 2 cut(s) 160, 429
CviJI RGCY 5 cut(s) 83, 99, 113, 281, 337
CviKI_1 RGCY 5 cut(s) 83, 99, 113, 281, 337
DdeI CTNAG 1 cut(s) 441
DpnI GATC 2 cut(s) 89, 249
DpnII GATC 2 cut(s) 87, 247
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
Eco47I GGWCC 2 cut(s) 175, 319
EcoRI GAATTC 1 cut(s) 394
FaeI CATG 2 cut(s) 163, 432
FaiI YATR 2 cut(s) 161, 430
FalI AAGNNNNNCTT 2 cut(s) 270, 302
FatI CATG 2 cut(s) 159, 428
Fnu4HI GCNGC 1 cut(s) 58
FokI GGATG 4 cut(s) 359, 375, 416, 431
Fsp4HI GCNGC 1 cut(s) 58
GluI GCNGC 1 cut(s) 58
HaeIII GGCC 1 cut(s) 99
HapII CCGG 1 cut(s) 91
Hin1II CATG 2 cut(s) 163, 432
HindIII AAGCTT 1 cut(s) 335
HinfI GANTC 2 cut(s) 223, 433
HpaII CCGG 1 cut(s) 91
Hpy188I TCNGA 1 cut(s) 393
Hpy188III TCNNGA 5 cut(s) 13, 44, 91, 145, 275
HpyAV CCTTC 1 cut(s) 332
HpyCH4V TGCA 2 cut(s) 4, 350
HpyF3I CTNAG 1 cut(s) 441
Hsp92II CATG 2 cut(s) 163, 432
Kpn2I TCCGGA 1 cut(s) 90
Kzo9I GATC 2 cut(s) 87, 247
LmnI GCTCC 1 cut(s) 286
LpnPI CCDG 6 cut(s) 12, 104, 134, 150, 240, 384
Lsp1109I GCAGC 1 cut(s) 69
LweI GCATC 1 cut(s) 337
MaeIII GTNAC 1 cut(s) 13
MalI GATC 2 cut(s) 89, 249
MboI GATC 2 cut(s) 87, 247
MboII GAAGA 3 cut(s) 43, 278, 303
MflI RGATCY 1 cut(s) 87
MlsI TGGCCA 1 cut(s) 99
MluCI AATT 6 cut(s) 192, 211, 238, 292, 366, 394
MluNI TGGCCA 1 cut(s) 99
MlyI GAGTC 1 cut(s) 232
MmeI TCCRAC 1 cut(s) 354
MnlI CCTC 3 cut(s) 40, 294, 416
Mox20I TGGCCA 1 cut(s) 99
MroI TCCGGA 1 cut(s) 90
MscI TGGCCA 1 cut(s) 99
MseI TTAA 2 cut(s) 237, 339
Msp20I TGGCCA 1 cut(s) 99
MspI CCGG 1 cut(s) 91
Mva1269I GAATGC 1 cut(s) 131
NdeII GATC 2 cut(s) 87, 247
NlaIII CATG 2 cut(s) 163, 432
NmuCI GTSAC 1 cut(s) 13
PctI GAATGC 1 cut(s) 131
PfeI GAWTC 1 cut(s) 433
PkrI GCNGC 1 cut(s) 59
PleI GAGTC 1 cut(s) 231
PpsI GAGTC 1 cut(s) 231
PspPI GGNCC 2 cut(s) 175, 319
PsuI RGATCY 1 cut(s) 87
SaqAI TTAA 2 cut(s) 237, 339
SatI GCNGC 1 cut(s) 58
Sau3AI GATC 2 cut(s) 87, 247
Sau96I GGNCC 2 cut(s) 175, 319
SchI GAGTC 1 cut(s) 232
SetI ASST 6 cut(s) 51, 180, 211, 283, 324, 339
SfaNI GCATC 1 cut(s) 337
SinI GGWCC 2 cut(s) 175, 319
SmlI CTYRAG 3 cut(s) 44, 145, 382
SmoI CTYRAG 3 cut(s) 44, 145, 382
Sse9I AATT 6 cut(s) 192, 211, 238, 292, 366, 394
TaqI TCGA 1 cut(s) 69
TasI AATT 6 cut(s) 192, 211, 238, 292, 366, 394
TfiI GAWTC 1 cut(s) 433
Tru1I TTAA 2 cut(s) 237, 339
Tru9I TTAA 2 cut(s) 237, 339
TscAI CASTG 1 cut(s) 445
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 1 cut(s) 57
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 1 cut(s) 314
TspRI CASTG 1 cut(s) 445
VpaK11BI GGWCC 2 cut(s) 175, 319
XapI RAATTY 2 cut(s) 192, 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.