Rh3CG307400
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
N/A
Physical Location & Seq
Reverse (-)
32171838 .. 32173987
2150 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG307400.1

Sequence Viewer

Length: 585 bp
ATGAGCTGCTTCGGCTGTTGTGAAGAAGATGATATGCATAAAGCTACTGACAATGGAGGTGCTTACATGATGAAAAATCCTGCAGGAAATGAGGGGATTCATCATGATTCCGGTAGTGCGCCCAAAGGTGGTCAAGCCGTAAAGGCCCAGCCTATTGAAGTTCCGCTTATACCAGTAGAGGAGCTGAAGGAAATTACAGATAACTTTGGGACAAGTGCCTTGATTGGGGAAGGTTCTTATGGAAGAGTATATTTTGGAGTACTTAAAAGCGGGGAGCAGGCAGCAATCAAGAAGCTTGATGCCAGCAAACAACCTGATGAGGAATATCTTGCGCAGGAAGGAAAGGTGTCAAAGGAGCTCAACCTGGCTACACCAAAACTTAGTGAAGACAAAGTTAGGCAGTGTGTTGATGCAAGACTAGGAGGAGAATTCCCCCCCAAGGCTGTTGCGAAGATGGCTGCAGTTGCTGCCTTGTGTGTGCAATATGAGGCTGATTTCCGCCCAAACATGAGCATTGTGGTCAAAGCCCTACAACCACTGCTAAATGCTCGGACTGGACCTACTGGTGAATCACCAAGCTTGTAG

Protein Analysis

194

Amino Acids

20.63

Weight (kDa)

5.17

Isoelectric Point (pI)

43.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 333
AciI CCGC 3 cut(s) 164, 270, 499
AcsI RAATTY 1 cut(s) 428
AcuI CTGAAG 1 cut(s) 206
AfaI GTAC 1 cut(s) 261
AfiI CCNNNNNNNGG 3 cut(s) 128, 225, 439
AgsI TTSAA 1 cut(s) 158
AjnI CCWGG 1 cut(s) 363
AluBI AGCT 6 cut(s) 6, 44, 184, 295, 358, 579
AluI AGCT 6 cut(s) 6, 44, 184, 295, 358, 579
Alw21I GWGCWC 1 cut(s) 360
AlwNI CAGNNNCTG 1 cut(s) 467
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 4 cut(s) 6, 281, 458, 467
ApoI RAATTY 1 cut(s) 428
AspLEI GCGC 2 cut(s) 121, 334
AspS9I GGNCC 2 cut(s) 145, 557
AsuHPI GGTGA 2 cut(s) 564, 578
AvaII GGWCC 1 cut(s) 557
BanII GRGCYC 1 cut(s) 360
BbsI GAAGAC 1 cut(s) 393
Bbv12I GWGCWC 1 cut(s) 360
BbvI GCAGC 3 cut(s) 293, 445, 454
BccI CCATC 1 cut(s) 448
BceAI ACGGC 1 cut(s) 122
BciT130I CCWGG 1 cut(s) 365
BfaI CTAG 1 cut(s) 419
BfmI CTRYAG 2 cut(s) 81, 459
BglI GCCNNNNNGGC 1 cut(s) 143
BisI GCNGC 4 cut(s) 7, 282, 459, 468
BlsI GCNGC 4 cut(s) 8, 283, 460, 469
BmcAI AGTACT 1 cut(s) 261
Bme1390I CCNGG 1 cut(s) 365
Bme18I GGWCC 1 cut(s) 557
BmgT120I GGNCC 2 cut(s) 145, 557
BmrFI CCNGG 1 cut(s) 365
BmsI GCATC 2 cut(s) 289, 400
BpiI GAAGAC 1 cut(s) 393
BsaJI CCNNGG 1 cut(s) 438
BsaWI WCCGGW 1 cut(s) 110
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 225, 439
Bse1I ACTGG 3 cut(s) 173, 559, 568
BseBI CCWGG 1 cut(s) 365
BseDI CCNNGG 1 cut(s) 438
BseLI CCNNNNNNNGG 3 cut(s) 128, 225, 439
BseNI ACTGG 3 cut(s) 173, 559, 568
BseRI GAGGAG 2 cut(s) 194, 438
BseXI GCAGC 3 cut(s) 293, 445, 454
BseYI CCCAGC 1 cut(s) 147
BshFI GGCC 1 cut(s) 146
BsiHKAI GWGCWC 1 cut(s) 360
BsiSI CCGG 1 cut(s) 111
BslFI GGGAC 1 cut(s) 223
BslI CCNNNNNNNGG 3 cut(s) 128, 225, 439
BsmFI GGGAC 1 cut(s) 223
BsnI GGCC 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 360
BspACI CCGC 3 cut(s) 164, 270, 499
BspANI GGCC 1 cut(s) 146
BspHI TCATGA 1 cut(s) 103
BspMAI CTGCAG 2 cut(s) 85, 463
BsrI ACTGG 3 cut(s) 173, 559, 568
BssECI CCNNGG 1 cut(s) 438
BssT1I CCWWGG 1 cut(s) 438
Bst2UI CCWGG 1 cut(s) 365
Bst6I CTCTTC 1 cut(s) 238
BstAPI GCANNNNNTGC 1 cut(s) 467
BstC8I GCNNGC 2 cut(s) 279, 304
BstDEI CTNAG 1 cut(s) 380
BstHHI GCGC 2 cut(s) 121, 334
BstMWI GCNNNNNNNGC 5 cut(s) 12, 143, 455, 464, 467
BstNI CCWGG 1 cut(s) 365
BstSCI CCNGG 1 cut(s) 363
BstSFI CTRYAG 2 cut(s) 81, 459
BstV1I GCAGC 3 cut(s) 293, 445, 454
BstV2I GAAGAC 1 cut(s) 393
BsuRI GGCC 1 cut(s) 146
BtsI GCAGTG 2 cut(s) 407, 536
BtsIMutI CAGTG 2 cut(s) 407, 536
Cac8I GCNNGC 2 cut(s) 279, 304
CaiI CAGNNNCTG 1 cut(s) 467
CciI TCATGA 1 cut(s) 103
CfoI GCGC 2 cut(s) 121, 334
Cfr13I GGNCC 2 cut(s) 145, 557
Csp6I GTAC 1 cut(s) 260
CviAII CATG 3 cut(s) 67, 104, 508
CviQI GTAC 1 cut(s) 260
DdeI CTNAG 1 cut(s) 380
Eam1104I CTCTTC 1 cut(s) 238
EarI CTCTTC 1 cut(s) 238
EciI GGCGGA 1 cut(s) 488
Ecl136II GAGCTC 1 cut(s) 358
Eco130I CCWWGG 1 cut(s) 438
Eco24I GRGCYC 1 cut(s) 360
Eco47I GGWCC 1 cut(s) 557
Eco53kI GAGCTC 1 cut(s) 358
Eco57I CTGAAG 1 cut(s) 206
EcoICRI GAGCTC 1 cut(s) 358
EcoRI GAATTC 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 363
EcoT14I CCWWGG 1 cut(s) 438
EcoT22I ATGCAT 1 cut(s) 39
EcoT38I GRGCYC 1 cut(s) 360
ErhI CCWWGG 1 cut(s) 438
FaeI CATG 3 cut(s) 70, 107, 511
FaiI YATR 9 cut(s) 35, 39, 68, 105, 170, 240, 250, 486, 509
FalI AAGNNNNNCTT 2 cut(s) 150, 182
FaqI GGGAC 1 cut(s) 223
FatI CATG 3 cut(s) 66, 103, 507
FauI CCCGC 1 cut(s) 263
Fnu4HI GCNGC 4 cut(s) 7, 282, 459, 468
FriOI GRGCYC 1 cut(s) 360
Fsp4HI GCNGC 4 cut(s) 7, 282, 459, 468
FspBI CTAG 1 cut(s) 419
FspI TGCGCA 1 cut(s) 333
GlaI GCGC 2 cut(s) 120, 333
GluI GCNGC 4 cut(s) 7, 282, 459, 468
GsaI CCCAGC 1 cut(s) 151
HaeIII GGCC 1 cut(s) 146
HapII CCGG 1 cut(s) 111
HhaI GCGC 2 cut(s) 121, 334
Hin1II CATG 3 cut(s) 70, 107, 511
Hin6I GCGC 2 cut(s) 119, 332
HinP1I GCGC 2 cut(s) 119, 332
HindIII AAGCTT 2 cut(s) 293, 577
HinfI GANTC 3 cut(s) 97, 107, 569
HpaII CCGG 1 cut(s) 111
HphI GGTGA 2 cut(s) 564, 578
Hpy188I TCNGA 1 cut(s) 552
Hpy188III TCNNGA 2 cut(s) 104, 289
HpyAV CCTTC 3 cut(s) 181, 224, 332
HpyCH4V TGCA 5 cut(s) 37, 83, 413, 461, 481
HpyF10VI GCNNNNNNNGC 5 cut(s) 12, 143, 455, 464, 467
HpyF3I CTNAG 1 cut(s) 380
Hsp92II CATG 3 cut(s) 70, 107, 511
HspAI GCGC 2 cut(s) 119, 332
LmnI GCTCC 3 cut(s) 181, 274, 355
Lsp1109I GCAGC 3 cut(s) 293, 445, 454
LweI GCATC 2 cut(s) 289, 400
MaeI CTAG 1 cut(s) 419
MboII GAAGA 5 cut(s) 35, 38, 255, 398, 463
MhlI GDGCHC 1 cut(s) 360
MluCI AATT 2 cut(s) 192, 428
MnlI CCTC 6 cut(s) 50, 85, 172, 313, 416, 481
Mph1103I ATGCAT 1 cut(s) 39
MseI TTAA 1 cut(s) 264
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 1 cut(s) 365
MvaI CCWGG 1 cut(s) 365
MwoI GCNNNNNNNGC 5 cut(s) 12, 143, 455, 464, 467
NlaIII CATG 3 cut(s) 70, 107, 511
NsbI TGCGCA 1 cut(s) 333
NsiI ATGCAT 1 cut(s) 39
PagI TCATGA 1 cut(s) 103
PfeI GAWTC 3 cut(s) 97, 107, 569
PkrI GCNGC 4 cut(s) 8, 283, 460, 469
Psp124BI GAGCTC 1 cut(s) 360
Psp6I CCWGG 1 cut(s) 363
PspFI CCCAGC 1 cut(s) 147
PspGI CCWGG 1 cut(s) 363
PspPI GGNCC 2 cut(s) 145, 557
PstI CTGCAG 2 cut(s) 85, 463
PstNI CAGNNNCTG 1 cut(s) 467
RsaI GTAC 1 cut(s) 261
RsaNI GTAC 1 cut(s) 260
SacI GAGCTC 1 cut(s) 360
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 4 cut(s) 7, 282, 459, 468
Sau96I GGNCC 2 cut(s) 145, 557
SbfI CCTGCAGG 1 cut(s) 85
ScaI AGTACT 1 cut(s) 261
ScrFI CCNGG 1 cut(s) 365
SdaI CCTGCAGG 1 cut(s) 85
SduI GDGCHC 1 cut(s) 360
SfaNI GCATC 2 cut(s) 289, 400
SfcI CTRYAG 2 cut(s) 81, 459
SinI GGWCC 1 cut(s) 557
Sse8387I CCTGCAGG 1 cut(s) 85
Sse9I AATT 2 cut(s) 192, 428
SsiI CCGC 3 cut(s) 164, 270, 499
SspMI CTAG 1 cut(s) 419
SstI GAGCTC 1 cut(s) 360
StyD4I CCNGG 1 cut(s) 363
StyI CCWWGG 1 cut(s) 438
TasI AATT 2 cut(s) 192, 428
TatI WGTACW 1 cut(s) 259
TfiI GAWTC 3 cut(s) 97, 107, 569
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TscAI CASTG 2 cut(s) 407, 543
TseI GCWGC 4 cut(s) 6, 281, 458, 467
TspDTI ATGAA 2 cut(s) 86, 89
TspRI CASTG 2 cut(s) 407, 543
VpaK11BI GGWCC 1 cut(s) 557
XapI RAATTY 1 cut(s) 428
XspI CTAG 1 cut(s) 419
ZrmI AGTACT 1 cut(s) 261
Zsp2I ATGCAT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.