Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

32802592 .. 32807122

Gene Structure 4531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG311600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGCCTCTGTAAGTGTGGCTCCTGCATCTGGATTAAGAGATCGCGTTGGAAATACAATTGCTGTTGATTGTTTGCCCAGTGAGATGAATGACATGAAAATTAGGGATGACAAGGAAATGGAAGCAACTGTTGTTGATGGTAATGGAACAGAAACGGGTCATATAATTGTCACAACTATTGGTGGAAGAAATGGCCAGCCAAAACAGACAATAAGCTATATGGCTGAGCGTGTTGTTGGACATGGATCTTTTGGATTGGTTTTTCAGGCCAAGTGTTTAGAAACTGGAGAAACTGTTGCTATTAAAAAGGTTCTTCAAGACAAAAGGTACAAGAATCGGGAGTTGCAAACCATGCGTCTTCTAGACCACCCCAACATTGTGTCTCTTAAACATTGTTTCTTTTCCACAACTGAAAAAGATGAGCTATACCTGAACCTCGTGCTTGAGTATGTCCCTGAGACTGTCCATAGAGTGATCAAACATTATAGTAAGATGAGCCAGAGGATGCCGCTGATATACGTTAAACTCTATTCTTACCAGATTTGTAGAGCACTTGCTTACATTCACAACAGTATTGGAGTGTGCCACAGGGACATAAAGCCTCAGAATTTGTTGGTCAATCCACATACTCACCAGCTTAAAATCTGTGACTTTGGGAGTGCAAAAGTCTTGGTTTGTTTTCTACATCCTGGCATTTTCTCAATATTCTATATTCTGGCTAATTGTTTCAGAATACTGAATTGGATGTACATACGACAGGTCAAGGGGGAACCCAACATATCTTACATCTGTTCAAGGTACTATCGAGCACCTGAACTTATATTTGGTGCAACAGAGTATACCACAGCCATTGACATCTGGTCTGCTGGATGTGTTCTAGCTGAACTTCTACTTGGACAGCCTCTATTTCCTGGAGAAAGTGGAGTAGACCAGCTTGTTGAAATCATTAAGGTTTTAGGTACCCCAACTAGAGAGGAAATAAAATGCATGAACCCTAACTACACAGAATTTAAATTCCCTCAAATTAAAGCTCATCCATGGCACAAGATATTCCACAAGCGCATGCCCCCGGAAGCCGTGGATCTCGTATCGAGGCTACTCCAATACTCTCCAAACCTAAGAAGTACAGCTTTGGAGGCCTTGGTTCATCCGTTTTTTGATGAGTTACGGGACCCTAATACCCGCCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAATTTTAAGGCTCATGGTAATAATCATTCTAGGACTCTGATTTTTCTCCTTGATTTCATTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko01521 ko04012 ko04062 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

427

Amino Acids

48.65

Weight (kDa)

8.74

Isoelectric Point (pI)

37.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	74 - 224	1.8e-34	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	76 - 222	7.6e-19	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	255 - 386	2.9e-20	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	959
AccB1I	GGYRCC	1 cut(s)	959
AccI	GTMKAC	2 cut(s)	839, 927
AccII	CGCG	1 cut(s)	45
AciI	CCGC	2 cut(s)	509, 1183
AclWI	GGATC	2 cut(s)	253, 1089
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	3 cut(s)	607, 1007, 1013
AfaI	GTAC	5 cut(s)	329, 749, 800, 961, 1126
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	4 cut(s)	317, 795, 941, 1219
AhdI	GACNNNNNGTC	1 cut(s)	859
AjnI	CCWGG	2 cut(s)	688, 910
AjuI	GAANNNNNNNTTGG	6 cut(s)	724, 756, 807, 839, 876, 908
AluBI	AGCT	7 cut(s)	216, 424, 637, 881, 934, 1031, 1130
AluI	AGCT	7 cut(s)	216, 424, 637, 881, 934, 1031, 1130
Alw21I	GWGCWC	2 cut(s)	553, 811
Alw26I	GTCTC	2 cut(s)	387, 452
AlwI	GGATC	2 cut(s)	253, 1089
AoxI	GGCC	4 cut(s)	3, 193, 267, 1137
ApoI	RAATTY	3 cut(s)	607, 1007, 1013
ArsI	GACNNNNNNTTYG	2 cut(s)	340, 372
Asp718I	GGTACC	1 cut(s)	959
AspLEI	GCGC	1 cut(s)	1062
AspS9I	GGNCC	1 cut(s)	1171
AsuC2I	CCSGG	1 cut(s)	1070
AsuHPI	GGTGA	1 cut(s)	623
AvaII	GGWCC	1 cut(s)	1171
BalI	TGGCCA	1 cut(s)	195
BanI	GGYRCC	1 cut(s)	959
BauI	CACGAG	1 cut(s)	437
BbsI	GAAGAC	1 cut(s)	350
Bbv12I	GWGCWC	2 cut(s)	553, 811
BccI	CCATC	1 cut(s)	131
BceAI	ACGGC	1 cut(s)	1061
BciT130I	CCWGG	2 cut(s)	690, 912
BclI	TGATCA	1 cut(s)	474
BcnI	CCSGG	1 cut(s)	1070
BcoDI	GTCTC	2 cut(s)	387, 452
BfaI	CTAG	4 cut(s)	362, 878, 969, 1248
BisI	GCNGC	1 cut(s)	509
BlpI	GCTNAGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	510
Bme1390I	CCNGG	3 cut(s)	690, 912, 1070
Bme18I	GGWCC	1 cut(s)	1171
BmeRI	GACNNNNNGTC	1 cut(s)	859
BmgT120I	GGNCC	1 cut(s)	1171
BmiI	GGNNCC	5 cut(s)	21, 771, 961, 1172, 1173
BmrFI	CCNGG	3 cut(s)	690, 912, 1070
BmrI	ACTGGG	1 cut(s)	72
BmsI	GCATC	2 cut(s)	35, 495
BmuI	ACTGGG	1 cut(s)	72
BpiI	GAAGAC	1 cut(s)	350
BpmI	CTGGAG	2 cut(s)	306, 933
Bpu1102I	GCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	464
BpuMI	CCSGG	1 cut(s)	1070
BsaJI	CCNNGG	4 cut(s)	1037, 1068, 1077, 1140
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse1I	ACTGG	2 cut(s)	78, 289
BseBI	CCWGG	2 cut(s)	690, 912
BseDI	CCNNGG	4 cut(s)	1037, 1068, 1077, 1140
BseGI	GGATG	7 cut(s)	112, 510, 685, 750, 875, 1033, 1147
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMII	CTCAG	3 cut(s)	216, 447, 617
BseNI	ACTGG	2 cut(s)	78, 289
Bsh1236I	CGCG	1 cut(s)	45
BshFI	GGCC	4 cut(s)	5, 195, 269, 1139
BshNI	GGYRCC	1 cut(s)	959
BsiHKAI	GWGCWC	2 cut(s)	553, 811
BsiSI	CCGG	1 cut(s)	1070
BslFI	GGGAC	3 cut(s)	437, 605, 1184
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	2 cut(s)	387, 452
BsmFI	GGGAC	3 cut(s)	437, 605, 1184
BsnI	GGCC	4 cut(s)	5, 195, 269, 1139
Bsp1286I	GDGCHC	2 cut(s)	553, 811
Bsp1407I	TGTACA	1 cut(s)	747
Bsp143I	GATC	4 cut(s)	40, 245, 474, 1081
Bsp1720I	GCTNAGC	1 cut(s)	225
Bsp19I	CCATGG	1 cut(s)	1037
BspACI	CCGC	2 cut(s)	509, 1183
BspANI	GGCC	4 cut(s)	5, 195, 269, 1139
BspCNI	CTCAG	3 cut(s)	217, 448, 616
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	5 cut(s)	21, 771, 961, 1172, 1173
BspPI	GGATC	2 cut(s)	253, 1089
BspT107I	GGYRCC	1 cut(s)	959
BsrGI	TGTACA	1 cut(s)	747
BsrI	ACTGG	2 cut(s)	78, 289
BssECI	CCNNGG	4 cut(s)	1037, 1068, 1077, 1140
BssMI	GATC	4 cut(s)	40, 245, 474, 1081
BssNAI	GTATAC	1 cut(s)	840
BssSI	CACGAG	1 cut(s)	437
BssT1I	CCWWGG	2 cut(s)	1037, 1140
Bst1107I	GTATAC	1 cut(s)	840
Bst2BI	CACGAG	1 cut(s)	437
Bst2UI	CCWGG	2 cut(s)	690, 912
Bst4CI	ACNGT	4 cut(s)	130, 295, 463, 572
BstAPI	GCANNNNNTGC	1 cut(s)	352
BstAUI	TGTACA	1 cut(s)	747
BstC8I	GCNNGC	3 cut(s)	197, 1064, 1187
BstDEI	CTNAG	4 cut(s)	225, 456, 603, 1118
BstDSI	CCRYGG	2 cut(s)	1037, 1077
BstF5I	GGATG	7 cut(s)	112, 510, 685, 750, 875, 1033, 1147
BstFNI	CGCG	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	1062
BstKTI	GATC	4 cut(s)	43, 248, 477, 1084
BstMAI	GTCTC	2 cut(s)	387, 452
BstMBI	GATC	4 cut(s)	40, 245, 474, 1081
BstMWI	GCNNNNNNNGC	2 cut(s)	352, 1136
BstNI	CCWGG	2 cut(s)	690, 912
BstNSI	RCATGY	1 cut(s)	1066
BstSCI	CCNGG	3 cut(s)	688, 910, 1068
BstUI	CGCG	1 cut(s)	45
BstV2I	GAAGAC	1 cut(s)	350
BstX2I	RGATCY	2 cut(s)	245, 1081
BstYI	RGATCY	2 cut(s)	245, 1081
BstZ17I	GTATAC	1 cut(s)	840
BsuRI	GGCC	4 cut(s)	5, 195, 269, 1139
BtgI	CCRYGG	2 cut(s)	1037, 1077
BtsCI	GGATG	7 cut(s)	112, 510, 685, 750, 875, 1033, 1147
BtsIMutI	CAGTG	1 cut(s)	85
Cac8I	GCNNGC	3 cut(s)	197, 1064, 1187
CfoI	GCGC	1 cut(s)	1062
Cfr13I	GGNCC	1 cut(s)	1171
CseI	GACGC	1 cut(s)	344
Csp6I	GTAC	5 cut(s)	328, 748, 799, 960, 1125
CspCI	CAANNNNNGTGG	2 cut(s)	832, 867
CviAII	CATG	7 cut(s)	94, 242, 352, 988, 1038, 1063, 1232
CviQI	GTAC	5 cut(s)	328, 748, 799, 960, 1125
DdeI	CTNAG	4 cut(s)	225, 456, 603, 1118
DpnI	GATC	4 cut(s)	42, 247, 476, 1083
DpnII	GATC	4 cut(s)	40, 245, 474, 1081
DraI	TTTAAA	1 cut(s)	1012
DriI	GACNNNNNGTC	1 cut(s)	859
EaeI	YGGCCR	1 cut(s)	193
Eam1105I	GACNNNNNGTC	1 cut(s)	859
Eco130I	CCWWGG	2 cut(s)	1037, 1140
Eco147I	AGGCCT	1 cut(s)	1139
Eco47I	GGWCC	1 cut(s)	1171
EcoO109I	RGGNCCY	1 cut(s)	1171
EcoRII	CCWGG	2 cut(s)	688, 910
EcoT14I	CCWWGG	2 cut(s)	1037, 1140
EcoT22I	ATGCAT	1 cut(s)	989
ErhI	CCWWGG	2 cut(s)	1037, 1140
FaeI	CATG	7 cut(s)	97, 245, 355, 991, 1041, 1066, 1235
FalI	AAGNNNNNCTT	2 cut(s)	1114, 1146
FaqI	GGGAC	3 cut(s)	437, 605, 1184
FatI	CATG	7 cut(s)	93, 241, 351, 987, 1037, 1062, 1231
FauI	CCCGC	1 cut(s)	1190
FbaI	TGATCA	1 cut(s)	474
FblI	GTMKAC	2 cut(s)	839, 927
Fnu4HI	GCNGC	1 cut(s)	509
FokI	GGATG	7 cut(s)	119, 517, 672, 757, 882, 1020, 1134
Fsp4HI	GCNGC	1 cut(s)	509
FspBI	CTAG	4 cut(s)	362, 878, 969, 1248
GlaI	GCGC	1 cut(s)	1061
GluI	GCNGC	1 cut(s)	509
GsuI	CTGGAG	2 cut(s)	306, 933
HaeIII	GGCC	4 cut(s)	5, 195, 269, 1139
HapII	CCGG	1 cut(s)	1070
HgaI	GACGC	1 cut(s)	344
HhaI	GCGC	1 cut(s)	1062
Hin1II	CATG	7 cut(s)	97, 245, 355, 991, 1041, 1066, 1235
Hin6I	GCGC	1 cut(s)	1060
HinP1I	GCGC	1 cut(s)	1060
HinfI	GANTC	2 cut(s)	334, 1252
HpaII	CCGG	1 cut(s)	1070
HphI	GGTGA	1 cut(s)	623
Hpy166II	GTNNAC	2 cut(s)	840, 928
Hpy188I	TCNGA	3 cut(s)	606, 731, 1257
Hpy188III	TCNNGA	4 cut(s)	30, 317, 338, 362
Hpy8I	GTNNAC	2 cut(s)	840, 928
HpyAV	CCTTC	1 cut(s)	1214
HpyCH4III	ACNGT	4 cut(s)	130, 295, 463, 572
HpyCH4IV	ACGT	2 cut(s)	519, 1198
HpyCH4V	TGCA	5 cut(s)	26, 346, 662, 830, 987
HpyF10VI	GCNNNNNNNGC	2 cut(s)	352, 1136
HpyF3I	CTNAG	4 cut(s)	225, 456, 603, 1118
HpySE526I	ACGT	2 cut(s)	519, 1198
Hsp92II	CATG	7 cut(s)	97, 245, 355, 991, 1041, 1066, 1235
HspAI	GCGC	1 cut(s)	1060
KflI	GGGWCCC	1 cut(s)	1171
KpnI	GGTACC	1 cut(s)	963
Ksp22I	TGATCA	1 cut(s)	474
Kzo9I	GATC	4 cut(s)	40, 245, 474, 1081
LmnI	GCTCC	1 cut(s)	25
LweI	GCATC	2 cut(s)	35, 495
MaeI	CTAG	4 cut(s)	362, 878, 969, 1248
MaeII	ACGT	2 cut(s)	519, 1198
MaeIII	GTNAC	3 cut(s)	169, 647, 1164
MalI	GATC	4 cut(s)	42, 247, 476, 1083
MboI	GATC	4 cut(s)	40, 245, 474, 1081
MboII	GAAGA	3 cut(s)	198, 305, 350
MfeI	CAATTG	1 cut(s)	57
MflI	RGATCY	2 cut(s)	245, 1081
MhlI	GDGCHC	2 cut(s)	553, 811
MlsI	TGGCCA	1 cut(s)	195
MluNI	TGGCCA	1 cut(s)	195
MlyI	GAGTC	1 cut(s)	1246
MmeI	TCCRAC	2 cut(s)	28, 217
MnlI	CCTC	9 cut(s)	16, 446, 495, 612, 912, 967, 1029, 1086, 1129
Mox20I	TGGCCA	1 cut(s)	195
Mph1103I	ATGCAT	1 cut(s)	989
MscI	TGGCCA	1 cut(s)	195
MseI	TTAA	9 cut(s)	35, 303, 387, 522, 639, 948, 1011, 1026, 1224
Msp20I	TGGCCA	1 cut(s)	195
MspA1I	CMGCKG	1 cut(s)	511
MspI	CCGG	1 cut(s)	1070
MspR9I	CCNGG	3 cut(s)	690, 912, 1070
MunI	CAATTG	1 cut(s)	57
MvaI	CCWGG	2 cut(s)	690, 912
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	352, 1136
NciI	CCSGG	1 cut(s)	1070
NcoI	CCATGG	1 cut(s)	1037
NdeII	GATC	4 cut(s)	40, 245, 474, 1081
NlaIII	CATG	7 cut(s)	97, 245, 355, 991, 1041, 1066, 1235
NlaIV	GGNNCC	5 cut(s)	21, 771, 961, 1172, 1173
NmuCI	GTSAC	2 cut(s)	169, 647
NsiI	ATGCAT	1 cut(s)	989
NspI	RCATGY	1 cut(s)	1066
PaeI	GCATGC	1 cut(s)	1066
PceI	AGGCCT	1 cut(s)	1139
PfeI	GAWTC	1 cut(s)	334
PfoI	TCCNGGA	1 cut(s)	910
PkrI	GCNGC	1 cut(s)	510
PleI	GAGTC	1 cut(s)	1246
PpsI	GAGTC	1 cut(s)	1246
PpuMI	RGGWCCY	1 cut(s)	1171
Psp5II	RGGWCCY	1 cut(s)	1171
Psp6I	CCWGG	2 cut(s)	688, 910
PspGI	CCWGG	2 cut(s)	688, 910
PspN4I	GGNNCC	5 cut(s)	21, 771, 961, 1172, 1173
PspPI	GGNCC	1 cut(s)	1171
PspPPI	RGGWCCY	1 cut(s)	1171
PsrI	GAACNNNNNNTAC	2 cut(s)	983, 1015
PsuI	RGATCY	2 cut(s)	245, 1081
RsaI	GTAC	5 cut(s)	329, 749, 800, 961, 1126
RsaNI	GTAC	5 cut(s)	328, 748, 799, 960, 1125
SaqAI	TTAA	9 cut(s)	35, 303, 387, 522, 639, 948, 1011, 1026, 1224
SatI	GCNGC	1 cut(s)	509
Sau3AI	GATC	4 cut(s)	40, 245, 474, 1081
Sau96I	GGNCC	1 cut(s)	1171
SchI	GAGTC	1 cut(s)	1246
ScrFI	CCNGG	3 cut(s)	690, 912, 1070
SduI	GDGCHC	2 cut(s)	553, 811
SfaNI	GCATC	2 cut(s)	35, 495
SinI	GGWCC	1 cut(s)	1171
SmiI	ATTTAAAT	1 cut(s)	1012
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
SphI	GCATGC	1 cut(s)	1066
SseBI	AGGCCT	1 cut(s)	1139
SsiI	CCGC	2 cut(s)	509, 1183
SspI	AATATT	1 cut(s)	705
SspMI	CTAG	4 cut(s)	362, 878, 969, 1248
StuI	AGGCCT	1 cut(s)	1139
StyD4I	CCNGG	3 cut(s)	688, 910, 1068
StyI	CCWWGG	2 cut(s)	1037, 1140
SwaI	ATTTAAAT	1 cut(s)	1012
TaaI	ACNGT	4 cut(s)	130, 295, 463, 572
TaiI	ACGT	2 cut(s)	522, 1201
TaqI	TCGA	2 cut(s)	805, 1091
TatI	WGTACW	2 cut(s)	747, 1124
TauI	GCSGC	1 cut(s)	511
TfiI	GAWTC	1 cut(s)	334
Tru1I	TTAA	9 cut(s)	35, 303, 387, 522, 639, 948, 1011, 1026, 1224
Tru9I	TTAA	9 cut(s)	35, 303, 387, 522, 639, 948, 1011, 1026, 1224
TscAI	CASTG	1 cut(s)	85
TseFI	GTSAC	2 cut(s)	169, 647
Tsp45I	GTSAC	2 cut(s)	169, 647
TspDTI	ATGAA	5 cut(s)	101, 110, 1004, 1136, 1264
TspGWI	ACGGA	1 cut(s)	1140
TspRI	CASTG	1 cut(s)	85
VpaK11BI	GGWCC	1 cut(s)	1171
XapI	RAATTY	3 cut(s)	607, 1007, 1013
XbaI	TCTAGA	1 cut(s)	361
XceI	RCATGY	1 cut(s)	1066
XmiI	GTMKAC	2 cut(s)	839, 927
XspI	CTAG	4 cut(s)	362, 878, 969, 1248
Zsp2I	ATGCAT	1 cut(s)	989

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.