Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

7512324 .. 7512641

Gene Structure 318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG095400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGAGTGTCCTTGGCCTGAAAGTGTTTTCTCTTCGGAGAATCGGCAAAAGGCGATGGAAGAAGAGCTGGTTCGAGGGGAGGAATTTGCGAATCAACTTCGCAAGTTTCTTGATGATCATGGAGATCATGGTCGATGGGTGGTGGCCCAAGCTCTTGGTACGAAGATCTCGAGCTCTTTTACGAATTCGAATCGCCTTTCAATCTTAAAAGGGAATCATCAGGGGGGGGCTAGTTCCTCATATTCGAGCCAACACTACTTTTGCTGCGCCTACTATTGTGAATTCATCGTCTTGGAATGCACAGGAGGGACGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009862 GO:0009863 GO:0009864 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048831 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1900055 GO:1900056 GO:1901698 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

105

Amino Acids

11.79

Weight (kDa)

5.47

Isoelectric Point (pI)

55.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	83, 184, 281
AfaI	GTAC	1 cut(s)	160
AgsI	TTSAA	1 cut(s)	201
AluBI	AGCT	3 cut(s)	67, 152, 174
AluI	AGCT	3 cut(s)	67, 152, 174
Alw21I	GWGCWC	1 cut(s)	176
Ama87I	CYCGRG	1 cut(s)	169
AoxI	GGCC	2 cut(s)	14, 144
ApeKI	GCWGC	1 cut(s)	264
ApoI	RAATTY	3 cut(s)	83, 184, 281
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	1 cut(s)	145
AsuII	TTCGAA	1 cut(s)	188
AvaI	CYCGRG	1 cut(s)	169
BanII	GRGCYC	1 cut(s)	176
Bbv12I	GWGCWC	1 cut(s)	176
BbvI	GCAGC	1 cut(s)	251
BccI	CCATC	2 cut(s)	49, 129
BclI	TGATCA	1 cut(s)	115
BfaI	CTAG	1 cut(s)	231
BglII	AGATCT	1 cut(s)	165
BisI	GCNGC	1 cut(s)	265
BlsI	GCNGC	1 cut(s)	266
BmeT110I	CYCGRG	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	145
Bpu14I	TTCGAA	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	11
BseDI	CCNNGG	1 cut(s)	11
BseXI	GCAGC	1 cut(s)	251
BshFI	GGCC	2 cut(s)	16, 146
BsiHKAI	GWGCWC	1 cut(s)	176
BsiHKCI	CYCGRG	1 cut(s)	169
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	2 cut(s)	16, 146
BsoBI	CYCGRG	1 cut(s)	169
Bsp119I	TTCGAA	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp143I	GATC	3 cut(s)	115, 124, 165
BspANI	GGCC	2 cut(s)	16, 146
BspQI	GCTCTTC	1 cut(s)	57
BspT104I	TTCGAA	1 cut(s)	188
BssECI	CCNNGG	1 cut(s)	11
BssMI	GATC	3 cut(s)	115, 124, 165
BssT1I	CCWWGG	1 cut(s)	11
Bst6I	CTCTTC	2 cut(s)	37, 57
BstBI	TTCGAA	1 cut(s)	188
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	3 cut(s)	118, 127, 168
BstMBI	GATC	3 cut(s)	115, 124, 165
BstV1I	GCAGC	1 cut(s)	251
BstX2I	RGATCY	1 cut(s)	165
BstXI	CCANNNNNNTGG	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	165
BsuRI	GGCC	2 cut(s)	16, 146
BtgZI	GCGATG	1 cut(s)	68
CfoI	GCGC	1 cut(s)	269
Cfr13I	GGNCC	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	2 cut(s)	119, 128
CviJI	RGCY	7 cut(s)	16, 67, 146, 152, 174, 230, 249
CviKI_1	RGCY	7 cut(s)	16, 67, 146, 152, 174, 230, 249
CviQI	GTAC	1 cut(s)	159
DpnI	GATC	3 cut(s)	117, 126, 167
DpnII	GATC	3 cut(s)	115, 124, 165
Eam1104I	CTCTTC	2 cut(s)	37, 57
EarI	CTCTTC	2 cut(s)	37, 57
Ecl136II	GAGCTC	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	11
Eco24I	GRGCYC	1 cut(s)	176
Eco53kI	GAGCTC	1 cut(s)	174
Eco88I	CYCGRG	1 cut(s)	169
EcoICRI	GAGCTC	1 cut(s)	174
EcoRI	GAATTC	2 cut(s)	184, 281
EcoT14I	CCWWGG	1 cut(s)	11
EcoT38I	GRGCYC	1 cut(s)	176
ErhI	CCWWGG	1 cut(s)	11
FaeI	CATG	2 cut(s)	122, 131
FaiI	YATR	4 cut(s)	120, 129, 241, 316
FatI	CATG	2 cut(s)	118, 127
FbaI	TGATCA	1 cut(s)	115
Fnu4HI	GCNGC	1 cut(s)	265
FriOI	GRGCYC	1 cut(s)	176
Fsp4HI	GCNGC	1 cut(s)	265
FspBI	CTAG	1 cut(s)	231
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	1 cut(s)	265
HaeIII	GGCC	2 cut(s)	16, 146
HhaI	GCGC	1 cut(s)	269
Hin1II	CATG	2 cut(s)	122, 131
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HinfI	GANTC	4 cut(s)	40, 91, 190, 214
Hpy188I	TCNGA	1 cut(s)	37
Hpy188III	TCNNGA	2 cut(s)	110, 169
HpyCH4V	TGCA	1 cut(s)	300
Hsp92II	CATG	2 cut(s)	122, 131
HspAI	GCGC	1 cut(s)	267
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	3 cut(s)	115, 124, 165
LguI	GCTCTTC	1 cut(s)	57
LpnPI	CCDG	4 cut(s)	30, 53, 206, 288
Lsp1109I	GCAGC	1 cut(s)	251
MaeI	CTAG	1 cut(s)	231
MalI	GATC	3 cut(s)	117, 126, 167
MboI	GATC	3 cut(s)	115, 124, 165
MboII	GAAGA	4 cut(s)	24, 71, 74, 175
MflI	RGATCY	1 cut(s)	165
MhlI	GDGCHC	1 cut(s)	176
MluCI	AATT	3 cut(s)	83, 184, 281
MnlI	CCTC	4 cut(s)	68, 73, 247, 299
MseI	TTAA	1 cut(s)	206
Mva1269I	GAATGC	1 cut(s)	302
NdeII	GATC	3 cut(s)	115, 124, 165
NlaIII	CATG	2 cut(s)	122, 131
NspV	TTCGAA	1 cut(s)	188
PaeR7I	CTCGAG	1 cut(s)	169
PciSI	GCTCTTC	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	167
PctI	GAATGC	1 cut(s)	302
PfeI	GAWTC	4 cut(s)	40, 91, 190, 214
PkrI	GCNGC	1 cut(s)	266
Psp124BI	GAGCTC	1 cut(s)	176
PspPI	GGNCC	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	165
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
SacI	GAGCTC	1 cut(s)	176
SapI	GCTCTTC	1 cut(s)	57
SaqAI	TTAA	1 cut(s)	206
SatI	GCNGC	1 cut(s)	265
Sau3AI	GATC	3 cut(s)	115, 124, 165
Sau96I	GGNCC	1 cut(s)	145
SduI	GDGCHC	1 cut(s)	176
SetI	ASST	3 cut(s)	69, 154, 176
Sfr274I	CTCGAG	1 cut(s)	169
SfuI	TTCGAA	1 cut(s)	188
SlaI	CTCGAG	1 cut(s)	169
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
Sse9I	AATT	3 cut(s)	83, 184, 281
SspMI	CTAG	1 cut(s)	231
SstI	GAGCTC	1 cut(s)	176
StyI	CCWWGG	1 cut(s)	11
TaqI	TCGA	5 cut(s)	73, 133, 170, 188, 245
TasI	AATT	3 cut(s)	83, 184, 281
TfiI	GAWTC	4 cut(s)	40, 91, 190, 214
Tru1I	TTAA	1 cut(s)	206
Tru9I	TTAA	1 cut(s)	206
TseI	GCWGC	1 cut(s)	264
TspDTI	ATGAA	1 cut(s)	274
XapI	RAATTY	3 cut(s)	83, 184, 281
XhoI	CTCGAG	1 cut(s)	169
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.