Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1329758 .. 1332175

Gene Structure 2418 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG007600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGGGAGGTTGGAACTTCATTCATTTCACATGCTTCATACTCTTGTCTGTTCTCCATTTGTCTGAAATCTGCATGGCTGATGTTCGAACTTTTGGGAAAATTAGTCCGGGGTTTCAAGGAGCTCAGCAGAATTGGATCGACAATAATGGGTTGTTTCTCTTGTCAAACCAATCTGAATTTGGTTTTGGCTTCGTCATCACTCCTCAAGATGTCACTTTGTTCCTGCTTTGTATTGTCCACATGGCCAGCATGAATATAGTATGGACTGCAAATAGGGGCTCCCCAGTTTCTAGTTCCGATAAATTTGTGTTTGATGACAAGGGTAGTTTGTCTTTGCAAAAAAGTGGAAGTGTGGTTTGGTCTGTAGATACTGGTGGCAAAGCAATTACTGCAATGGAGTTGCGGGACTCGGGAAATTTGGTTTTGCTTGGGGATGACAATGGAGTAGTTTGGCAGAGTTTTAGTCATCCAACCGATACTCTATTATGGAACCAGGAGTTTCAGGAAGGAATGAAACTTCAAAGCGAACCAAGCTCCAACAATGTGACCTACATTCTTGAAATCAAGTCCGGCGACTTGATTCTTTCTGCAGGTCTTAGCTCCCATGCGAATTGCAAGTCGGGGATTGTCACCTCATGTTCAAAGGGTTCTACAATGCTTACAACTGCTGGTGATGGGCTCTATTATTTTGCATTGGAATTTGTTTCACCCTCTTCAAGAACTGACTTGGAGGGTTGCCAAAGCTCTTGCCTTAGTAATTGTTCATGTGTTGCTTTGTTCTATCAAAGCAGTACAAGAAATTGTTATATGTTTGACAGGATAGGTAGCTTCCAAGCTTACGACAAGGGCTTTGATTCTTATGTTAAAGTGTCGAGTGATGGAGAAGTGTCGAGTGATGGAGGCAGTGGGGGCAGCGGAAGCAAGAAACACTTCGCTTATATTGTGGTCATTGCTGTTTCGACAGTAGTTGTTATCTGTGGCCTACTCTTTGCAGGATACCGATACTACCAGAGGAAGAGAGATGCCCCACTATCTCCTGAAGATACTTCAGAAGAGGATAATTTCTTGGAAAACTTGACTGGCAAAATGAAGGACATTGTCGACTCCAAGCTGAAGATAGATGACGCCGACGAGAGGGTTTCTACCGCGATTATTGTTGCATTGTGGTGTATACAGCAAGACATGTCTCTGAGGCCATCGATGGCCAAGGTTGTCCAAATCTTTGAAGGGGTCTGTCCTGTTCCTCAGCCTCCAACTTCCTCAGCAATGATTTCTTCAACAATGACTTCCTCCGGACCAACGTGCTGCAACAGTGATGCATATTTGTCTGCAGAGCATCTTTCTGGACCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

451

Amino Acids

48.9

Weight (kDa)

4.87

Isoelectric Point (pI)

44.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	86 - 169	4e-17	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	581
AccI	GTMKAC	2 cut(s)	1101, 1171
AccII	CGCG	1 cut(s)	1148
AccIII	TCCGGA	1 cut(s)	1292
AciI	CCGC	3 cut(s)	403, 915, 1146
AclWI	GGATC	1 cut(s)	143
AcoI	YGGCCR	2 cut(s)	243, 1203
AcsI	RAATTY	4 cut(s)	176, 302, 415, 698
AcuI	CTGAAG	3 cut(s)	1032, 1059, 1133
AcyI	GRCGYC	1 cut(s)	1125
AfaI	GTAC	1 cut(s)	793
AfiI	CCNNNNNNNGG	1 cut(s)	1134
AflIII	ACRYGT	1 cut(s)	1182
AgsI	TTSAA	7 cut(s)	116, 521, 560, 642, 717, 1226, 1278
AjnI	CCWGG	1 cut(s)	492
AjuI	GAANNNNNNNTTGG	4 cut(s)	168, 200, 340, 372
AluBI	AGCT	7 cut(s)	122, 534, 600, 744, 828, 836, 1111
AluI	AGCT	7 cut(s)	122, 534, 600, 744, 828, 836, 1111
Alw21I	GWGCWC	1 cut(s)	124
Alw26I	GTCTC	1 cut(s)	1191
AlwI	GGATC	1 cut(s)	143
Ama87I	CYCGRG	1 cut(s)	409
Aor13HI	TCCGGA	1 cut(s)	1292
AoxI	GGCC	4 cut(s)	243, 979, 1193, 1203
ApeKI	GCWGC	2 cut(s)	912, 1305
ApoI	RAATTY	4 cut(s)	176, 302, 415, 698
ArsI	GACNNNNNNTTYG	4 cut(s)	602, 634, 833, 865
Asp700I	GAANNNNTTC	1 cut(s)	929
AspS9I	GGNCC	2 cut(s)	1295, 1346
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	3 cut(s)	622, 683, 699
AsuII	TTCGAA	1 cut(s)	85
AvaI	CYCGRG	1 cut(s)	409
AvaII	GGWCC	2 cut(s)	1295, 1346
BalI	TGGCCA	2 cut(s)	245, 1205
BanII	GRGCYC	3 cut(s)	124, 281, 681
Bbv12I	GWGCWC	1 cut(s)	124
BbvCI	CCTCAGC	2 cut(s)	1245, 1261
BbvI	GCAGC	2 cut(s)	924, 1292
BccI	CCATC	5 cut(s)	668, 872, 890, 1195, 1204
BciT130I	CCWGG	1 cut(s)	494
BciVI	GTATCC	1 cut(s)	989
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	1191
BfaI	CTAG	1 cut(s)	291
BfmI	CTRYAG	3 cut(s)	363, 588, 1329
BfuAI	ACCTGC	1 cut(s)	581
BfuI	GTATCC	1 cut(s)	989
BisI	GCNGC	2 cut(s)	913, 1306
BlpI	GCTNAGC	1 cut(s)	123
BlsI	GCNGC	2 cut(s)	914, 1307
Bme1390I	CCNGG	2 cut(s)	108, 494
Bme18I	GGWCC	2 cut(s)	1295, 1346
BmeT110I	CYCGRG	1 cut(s)	409
BmgT120I	GGNCC	2 cut(s)	1295, 1346
BmiI	GGNNCC	2 cut(s)	280, 491
BmrFI	CCNGG	2 cut(s)	108, 494
BmrI	ACTGGG	1 cut(s)	278
BmsI	GCATC	3 cut(s)	1012, 1306, 1345
BmuI	ACTGGG	1 cut(s)	278
Bpu10I	CCTNAGC	2 cut(s)	1245, 1261
Bpu1102I	GCTNAGC	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	85
BpuEI	CTTGAG	1 cut(s)	189
BpuMI	CCSGG	1 cut(s)	108
Bsa29I	ATCGAT	1 cut(s)	1199
BsaHI	GRCGYC	1 cut(s)	1125
BsaJI	CCNNGG	2 cut(s)	107, 1206
BsaWI	WCCGGW	1 cut(s)	1292
Bsc4I	CCNNNNNNNGG	1 cut(s)	1134
Bse1I	ACTGG	3 cut(s)	284, 376, 1084
Bse3DI	GCAATG	3 cut(s)	399, 948, 1272
BseAI	TCCGGA	1 cut(s)	1292
BseBI	CCWGG	1 cut(s)	494
BseCI	ATCGAT	1 cut(s)	1199
BseDI	CCNNGG	2 cut(s)	107, 1206
BseGI	GGATG	2 cut(s)	439, 466
BseLI	CCNNNNNNNGG	1 cut(s)	1134
BseMI	GCAATG	3 cut(s)	399, 948, 1272
BseMII	CTCAG	4 cut(s)	137, 1181, 1259, 1275
BseNI	ACTGG	3 cut(s)	284, 376, 1084
BseRI	GAGGAG	1 cut(s)	192
BseXI	GCAGC	2 cut(s)	924, 1292
Bsh1236I	CGCG	1 cut(s)	1148
BshFI	GGCC	4 cut(s)	245, 981, 1195, 1205
BshVI	ATCGAT	1 cut(s)	1199
BsiHKAI	GWGCWC	1 cut(s)	124
BsiHKCI	CYCGRG	1 cut(s)	409
BsiSI	CCGG	3 cut(s)	107, 570, 1293
BslFI	GGGAC	1 cut(s)	419
BslI	CCNNNNNNNGG	1 cut(s)	1134
BsmAI	GTCTC	1 cut(s)	1191
BsmFI	GGGAC	1 cut(s)	419
BsnI	GGCC	4 cut(s)	245, 981, 1195, 1205
BsoBI	CYCGRG	1 cut(s)	409
Bsp119I	TTCGAA	1 cut(s)	85
Bsp1286I	GDGCHC	3 cut(s)	124, 281, 681
Bsp13I	TCCGGA	1 cut(s)	1292
Bsp143I	GATC	1 cut(s)	135
Bsp1720I	GCTNAGC	1 cut(s)	123
BspACI	CCGC	3 cut(s)	403, 915, 1146
BspANI	GGCC	4 cut(s)	245, 981, 1195, 1205
BspCNI	CTCAG	4 cut(s)	136, 1182, 1258, 1274
BspDI	ATCGAT	1 cut(s)	1199
BspEI	TCCGGA	1 cut(s)	1292
BspFNI	CGCG	1 cut(s)	1148
BspLI	GGNNCC	2 cut(s)	280, 491
BspMAI	CTGCAG	2 cut(s)	592, 1333
BspMI	ACCTGC	1 cut(s)	581
BspPI	GGATC	1 cut(s)	143
BspT104I	TTCGAA	1 cut(s)	85
BsrDI	GCAATG	3 cut(s)	399, 948, 1272
BsrI	ACTGG	3 cut(s)	284, 376, 1084
BssECI	CCNNGG	2 cut(s)	107, 1206
BssMI	GATC	1 cut(s)	135
BssNAI	GTATAC	1 cut(s)	1172
BssNI	GRCGYC	1 cut(s)	1125
BssT1I	CCWWGG	1 cut(s)	1206
Bst1107I	GTATAC	1 cut(s)	1172
Bst2UI	CCWGG	1 cut(s)	494
Bst4CI	ACNGT	2 cut(s)	964, 1313
Bst6I	CTCTTC	3 cut(s)	718, 1010, 1047
BstACI	GRCGYC	1 cut(s)	1125
BstAPI	GCANNNNNTGC	1 cut(s)	389
BstBI	TTCGAA	1 cut(s)	85
BstC8I	GCNNGC	1 cut(s)	247
BstDEI	CTNAG	6 cut(s)	123, 596, 752, 1190, 1245, 1261
BstF5I	GGATG	2 cut(s)	439, 466
BstFNI	CGCG	1 cut(s)	1148
BstKTI	GATC	1 cut(s)	138
BstMAI	GTCTC	1 cut(s)	1191
BstMBI	GATC	1 cut(s)	135
BstMWI	GCNNNNNNNGC	4 cut(s)	389, 531, 909, 918
BstNI	CCWGG	1 cut(s)	494
BstNSI	RCATGY	2 cut(s)	33, 1186
BstSCI	CCNGG	2 cut(s)	106, 492
BstSFI	CTRYAG	3 cut(s)	363, 588, 1329
BstUI	CGCG	1 cut(s)	1148
BstV1I	GCAGC	2 cut(s)	924, 1292
BstZ17I	GTATAC	1 cut(s)	1172
Bsu15I	ATCGAT	1 cut(s)	1199
BsuI	GTATCC	1 cut(s)	989
BsuRI	GGCC	4 cut(s)	245, 981, 1195, 1205
BsuTUI	ATCGAT	1 cut(s)	1199
BtsCI	GGATG	2 cut(s)	439, 466
BtsI	GCAGTG	1 cut(s)	910
BtsIMutI	CAGTG	2 cut(s)	910, 1318
BveI	ACCTGC	1 cut(s)	581
Cac8I	GCNNGC	1 cut(s)	247
Cfr13I	GGNCC	2 cut(s)	1295, 1346
ClaI	ATCGAT	1 cut(s)	1199
CseI	GACGC	1 cut(s)	1133
Csp6I	GTAC	1 cut(s)	792
CviAII	CATG	8 cut(s)	30, 73, 241, 250, 605, 636, 765, 1183
CviQI	GTAC	1 cut(s)	792
DdeI	CTNAG	6 cut(s)	123, 596, 752, 1190, 1245, 1261
DpnI	GATC	1 cut(s)	137
DpnII	GATC	1 cut(s)	135
EaeI	YGGCCR	2 cut(s)	243, 1203
Eam1104I	CTCTTC	3 cut(s)	718, 1010, 1047
EarI	CTCTTC	3 cut(s)	718, 1010, 1047
Ecl136II	GAGCTC	1 cut(s)	122
Eco130I	CCWWGG	1 cut(s)	1206
Eco24I	GRGCYC	3 cut(s)	124, 281, 681
Eco47I	GGWCC	2 cut(s)	1295, 1346
Eco53kI	GAGCTC	1 cut(s)	122
Eco57I	CTGAAG	3 cut(s)	1032, 1059, 1133
Eco88I	CYCGRG	1 cut(s)	409
EcoICRI	GAGCTC	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	492
EcoT14I	CCWWGG	1 cut(s)	1206
EcoT22I	ATGCAT	1 cut(s)	1321
EcoT38I	GRGCYC	3 cut(s)	124, 281, 681
ErhI	CCWWGG	1 cut(s)	1206
FaeI	CATG	8 cut(s)	33, 76, 244, 253, 608, 639, 768, 1186
FalI	AAGNNNNNCTT	2 cut(s)	914, 946
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	8 cut(s)	29, 72, 240, 249, 604, 635, 764, 1182
FauI	CCCGC	1 cut(s)	396
FblI	GTMKAC	2 cut(s)	1101, 1171
Fnu4HI	GCNGC	2 cut(s)	913, 1306
FokI	GGATG	2 cut(s)	446, 453
FriOI	GRGCYC	3 cut(s)	124, 281, 681
Fsp4HI	GCNGC	2 cut(s)	913, 1306
FspBI	CTAG	1 cut(s)	291
GluI	GCNGC	2 cut(s)	913, 1306
HaeIII	GGCC	4 cut(s)	245, 981, 1195, 1205
HapII	CCGG	3 cut(s)	107, 570, 1293
HgaI	GACGC	1 cut(s)	1133
Hin1I	GRCGYC	1 cut(s)	1125
Hin1II	CATG	8 cut(s)	33, 76, 244, 253, 608, 639, 768, 1186
HincII	GTYRAC	1 cut(s)	1102
HindII	GTYRAC	1 cut(s)	1102
HindIII	AAGCTT	1 cut(s)	834
HinfI	GANTC	4 cut(s)	407, 580, 854, 1103
HpaII	CCGG	3 cut(s)	107, 570, 1293
HphI	GGTGA	3 cut(s)	622, 683, 699
Hpy166II	GTNNAC	3 cut(s)	238, 1102, 1172
Hpy188I	TCNGA	5 cut(s)	64, 175, 298, 1051, 1191
Hpy188III	TCNNGA	8 cut(s)	206, 411, 503, 557, 717, 1037, 1293, 1344
Hpy8I	GTNNAC	3 cut(s)	238, 1102, 1172
Hpy99I	CGWCG	1 cut(s)	1133
HpyAV	CCTTC	3 cut(s)	500, 1084, 1220
HpyCH4III	ACNGT	2 cut(s)	964, 1313
HpyCH4IV	ACGT	1 cut(s)	1301
HpyF10VI	GCNNNNNNNGC	4 cut(s)	389, 531, 909, 918
HpyF3I	CTNAG	6 cut(s)	123, 596, 752, 1190, 1245, 1261
HpySE526I	ACGT	1 cut(s)	1301
Hsp92I	GRCGYC	1 cut(s)	1125
Hsp92II	CATG	8 cut(s)	33, 76, 244, 253, 608, 639, 768, 1186
Kpn2I	TCCGGA	1 cut(s)	1292
Kzo9I	GATC	1 cut(s)	135
LmnI	GCTCC	4 cut(s)	119, 284, 539, 605
Lsp1109I	GCAGC	2 cut(s)	924, 1292
LweI	GCATC	3 cut(s)	1012, 1306, 1345
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	1 cut(s)	1301
MaeIII	GTNAC	3 cut(s)	211, 544, 628
MalI	GATC	1 cut(s)	137
MboI	GATC	1 cut(s)	135
MboII	GAAGA	6 cut(s)	705, 1027, 1052, 1064, 1126, 1266
MhlI	GDGCHC	3 cut(s)	124, 281, 681
MlsI	TGGCCA	2 cut(s)	245, 1205
MluNI	TGGCCA	2 cut(s)	245, 1205
MlyI	GAGTC	2 cut(s)	401, 1097
MmeI	TCCRAC	3 cut(s)	494, 561, 1277
Mox20I	TGGCCA	2 cut(s)	245, 1205
Mph1103I	ATGCAT	1 cut(s)	1321
MroI	TCCGGA	1 cut(s)	1292
MroXI	GAANNNNTTC	1 cut(s)	929
MscI	TGGCCA	2 cut(s)	245, 1205
MseI	TTAA	1 cut(s)	864
MslI	CAYNNNNRTG	1 cut(s)	1165
Msp20I	TGGCCA	2 cut(s)	245, 1205
MspA1I	CMGCKG	1 cut(s)	915
MspI	CCGG	3 cut(s)	107, 570, 1293
MspR9I	CCNGG	2 cut(s)	108, 494
MvaI	CCWGG	1 cut(s)	494
MvnI	CGCG	1 cut(s)	1148
MwoI	GCNNNNNNNGC	4 cut(s)	389, 531, 909, 918
NciI	CCSGG	1 cut(s)	108
NdeII	GATC	1 cut(s)	135
NlaIII	CATG	8 cut(s)	33, 76, 244, 253, 608, 639, 768, 1186
NlaIV	GGNNCC	2 cut(s)	280, 491
NmuCI	GTSAC	3 cut(s)	211, 544, 628
NsiI	ATGCAT	1 cut(s)	1321
NspI	RCATGY	2 cut(s)	33, 1186
NspV	TTCGAA	1 cut(s)	85
PciI	ACATGT	1 cut(s)	1182
PdmI	GAANNNNTTC	1 cut(s)	929
PfeI	GAWTC	2 cut(s)	580, 854
PflFI	GACNNNGTC	1 cut(s)	1097
PkrI	GCNGC	2 cut(s)	914, 1307
PleI	GAGTC	2 cut(s)	401, 1097
PpsI	GAGTC	2 cut(s)	401, 1097
PscI	ACATGT	1 cut(s)	1182
Psp124BI	GAGCTC	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	492
PspGI	CCWGG	1 cut(s)	492
PspN4I	GGNNCC	2 cut(s)	280, 491
PspPI	GGNCC	2 cut(s)	1295, 1346
PstI	CTGCAG	2 cut(s)	592, 1333
PsyI	GACNNNGTC	1 cut(s)	1097
RsaI	GTAC	1 cut(s)	793
RsaNI	GTAC	1 cut(s)	792
RseI	CAYNNNNRTG	1 cut(s)	1165
SacI	GAGCTC	1 cut(s)	124
SalI	GTCGAC	1 cut(s)	1100
SaqAI	TTAA	1 cut(s)	864
SatI	GCNGC	2 cut(s)	913, 1306
Sau3AI	GATC	1 cut(s)	135
Sau96I	GGNCC	2 cut(s)	1295, 1346
SchI	GAGTC	2 cut(s)	401, 1097
ScrFI	CCNGG	2 cut(s)	108, 494
SduI	GDGCHC	3 cut(s)	124, 281, 681
SfaNI	GCATC	3 cut(s)	1012, 1306, 1345
SfcI	CTRYAG	3 cut(s)	363, 588, 1329
SfuI	TTCGAA	1 cut(s)	85
SinI	GGWCC	2 cut(s)	1295, 1346
SmiMI	CAYNNNNRTG	1 cut(s)	1165
SmlI	CTYRAG	1 cut(s)	204
SmoI	CTYRAG	1 cut(s)	204
SsiI	CCGC	3 cut(s)	403, 915, 1146
SspMI	CTAG	1 cut(s)	291
SstI	GAGCTC	1 cut(s)	124
StyD4I	CCNGG	2 cut(s)	106, 492
StyI	CCWWGG	1 cut(s)	1206
TaaI	ACNGT	2 cut(s)	964, 1313
TaiI	ACGT	1 cut(s)	1304
TaqI	TCGA	7 cut(s)	85, 138, 872, 890, 959, 1101, 1199
TatI	WGTACW	1 cut(s)	791
TfiI	GAWTC	2 cut(s)	580, 854
Tru1I	TTAA	1 cut(s)	864
Tru9I	TTAA	1 cut(s)	864
TscAI	CASTG	2 cut(s)	910, 1318
TseFI	GTSAC	3 cut(s)	211, 544, 628
TseI	GCWGC	2 cut(s)	912, 1305
Tsp45I	GTSAC	3 cut(s)	211, 544, 628
TspDTI	ATGAA	7 cut(s)	7, 11, 25, 266, 527, 753, 1103
TspRI	CASTG	2 cut(s)	910, 1318
Tth111I	GACNNNGTC	1 cut(s)	1097
VpaK11BI	GGWCC	2 cut(s)	1295, 1346
XapI	RAATTY	4 cut(s)	176, 302, 415, 698
XceI	RCATGY	2 cut(s)	33, 1186
XcmI	CCANNNNNNNNNTGG	1 cut(s)	176
XmiI	GTMKAC	2 cut(s)	1101, 1171
XmnI	GAANNNNTTC	1 cut(s)	929
XspI	CTAG	1 cut(s)	291
Zsp2I	ATGCAT	1 cut(s)	1321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.