Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

37413667 .. 37421111

Gene Structure 7445 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG148000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGACGCGTTCGAGAAACTGGAGAAGGTTGGAGAAGGGACCTACGACAAGGTTTACAGAGCCAGAGAGAAGGCCACCGGCAAGATCGTCGCCCTAAAAAAGACTCGCCTCCACGAGGACGAAGAAGGCGTCCCTCCCACCACTCTCCGCGAGGAGCTACAGCCAAAACCAAAGCTTATAATGCGTGAACCACATGCTAAAGTAAAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000086 GO:0000278 GO:0000307 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008284 GO:0009719 GO:0009725 GO:0009755 GO:0009934 GO:0009987 GO:0010033 GO:0010389 GO:0010468 GO:0010564 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0022603 GO:0023052 GO:0030332 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0036211 GO:0042127 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0044843 GO:0046777 GO:0048509 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0070887 GO:0071310 GO:0071495 GO:0071704 GO:0071840 GO:0097472 GO:0140096 GO:1901564 GO:1901987 GO:1901990 GO:1902494 GO:1902554 GO:1902749 GO:1902911 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

70

Amino Acids

8.03

Weight (kDa)

9.26

Isoelectric Point (pI)

20.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 54	1.2e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	179
AccII	CGCG	2 cut(s)	8, 150
AciI	CCGC	1 cut(s)	148
AcyI	GRCGYC	1 cut(s)	129
AfiI	CCNNNNNNNGG	1 cut(s)	115
AflIII	ACRYGT	1 cut(s)	6
AluBI	AGCT	2 cut(s)	157, 175
AluI	AGCT	2 cut(s)	157, 175
AoxI	GGCC	1 cut(s)	72
ArsI	GACNNNNNNTTYG	2 cut(s)	114, 146
AspS9I	GGNCC	1 cut(s)	39
AvaII	GGWCC	1 cut(s)	39
BauI	CACGAG	1 cut(s)	113
BcgI	CGANNNNNNTGC	2 cut(s)	70, 104
BfmI	CTRYAG	1 cut(s)	158
Bme18I	GGWCC	1 cut(s)	39
BmgT120I	GGNCC	1 cut(s)	39
BmiI	GGNNCC	1 cut(s)	40
BpmI	CTGGAG	1 cut(s)	41
BsaHI	GRCGYC	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	1 cut(s)	24
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseNI	ACTGG	1 cut(s)	24
BseRI	GAGGAG	1 cut(s)	167
Bsh1236I	CGCG	2 cut(s)	8, 150
BshFI	GGCC	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	78
BslFI	GGGAC	2 cut(s)	52, 116
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmFI	GGGAC	2 cut(s)	52, 116
BsnI	GGCC	1 cut(s)	74
Bsp143I	GATC	1 cut(s)	84
BspACI	CCGC	1 cut(s)	148
BspANI	GGCC	1 cut(s)	74
BspFNI	CGCG	2 cut(s)	8, 150
BspLI	GGNNCC	1 cut(s)	40
BsrFI	RCCGGY	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	24
BssAI	RCCGGY	1 cut(s)	77
BssMI	GATC	1 cut(s)	84
BssNI	GRCGYC	1 cut(s)	129
BssSI	CACGAG	1 cut(s)	113
Bst2BI	CACGAG	1 cut(s)	113
BstACI	GRCGYC	1 cut(s)	129
BstENI	CCTNNNNNAGG	1 cut(s)	113
BstFNI	CGCG	2 cut(s)	8, 150
BstKTI	GATC	1 cut(s)	87
BstMBI	GATC	1 cut(s)	84
BstMWI	GCNNNNNNNGC	1 cut(s)	181
BstNSI	RCATGY	1 cut(s)	197
BstSFI	CTRYAG	1 cut(s)	158
BstUI	CGCG	2 cut(s)	8, 150
BsuRI	GGCC	1 cut(s)	74
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	39
CseI	GACGC	2 cut(s)	14, 118
CviAII	CATG	1 cut(s)	194
CviJI	RGCY	5 cut(s)	62, 74, 157, 163, 175
CviKI_1	RGCY	5 cut(s)	62, 74, 157, 163, 175
DpnI	GATC	1 cut(s)	86
DpnII	GATC	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	39
EcoNI	CCTNNNNNAGG	1 cut(s)	113
EcoO109I	RGGNCCY	1 cut(s)	39
FaeI	CATG	1 cut(s)	197
FaiI	YATR	3 cut(s)	179, 195, 211
FaqI	GGGAC	2 cut(s)	52, 116
FatI	CATG	1 cut(s)	193
GsuI	CTGGAG	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	1 cut(s)	78
HgaI	GACGC	2 cut(s)	14, 118
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	1 cut(s)	197
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	1 cut(s)	103
HpaII	CCGG	1 cut(s)	78
Hpy166II	GTNNAC	2 cut(s)	55, 188
Hpy188III	TCNNGA	1 cut(s)	13
Hpy8I	GTNNAC	2 cut(s)	55, 188
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	4 cut(s)	19, 29, 64, 119
HpyF10VI	GCNNNNNNNGC	1 cut(s)	181
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	1 cut(s)	197
Kzo9I	GATC	1 cut(s)	84
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	3 cut(s)	5, 76, 91
MalI	GATC	1 cut(s)	86
MboI	GATC	1 cut(s)	84
MboII	GAAGA	1 cut(s)	134
MluI	ACGCGT	1 cut(s)	6
MlyI	GAGTC	1 cut(s)	97
MmeI	TCCRAC	1 cut(s)	10
MnlI	CCTC	4 cut(s)	109, 119, 144, 145
MspI	CCGG	1 cut(s)	78
MvnI	CGCG	2 cut(s)	8, 150
MwoI	GCNNNNNNNGC	1 cut(s)	181
NdeII	GATC	1 cut(s)	84
NlaIII	CATG	1 cut(s)	197
NlaIV	GGNNCC	1 cut(s)	40
NspI	RCATGY	1 cut(s)	197
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PpuMI	RGGWCCY	1 cut(s)	39
PsiI	TTATAA	1 cut(s)	179
Psp5II	RGGWCCY	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	39
PspPPI	RGGWCCY	1 cut(s)	39
Sau3AI	GATC	1 cut(s)	84
Sau96I	GGNCC	1 cut(s)	39
SchI	GAGTC	1 cut(s)	97
SetI	ASST	5 cut(s)	30, 44, 54, 159, 177
SfcI	CTRYAG	1 cut(s)	158
SinI	GGWCC	1 cut(s)	39
SsiI	CCGC	1 cut(s)	148
TaqI	TCGA	1 cut(s)	12
VpaK11BI	GGWCC	1 cut(s)	39
XagI	CCTNNNNNAGG	1 cut(s)	113
XceI	RCATGY	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.