Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

56848256 .. 56848984

Gene Structure 729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG253600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGGACAGTCCTCTTCAATTCCCGAGGCTCCACCGCAGCGAGAAATCTCCCCCAGCCGCCGATTCAGCTTCAAGCACATACCGGTTATGTCAACGGCGGACCAAAACGACGACGAATCTGACCGTTTTGAGACCGTCGATGGTCGCGACTACACCTTAGATCTCCCCGACGAGTGCTTGGGGATCATTTTCCATTTCCTCGGCTCCGGCGACCGGAAGCGTAGCTCGGTCCTCGTGCTTCGATGTGACCGGAAATCGATTAGCATAGACGACGATGCTCTGGTCTTGATCTCCGTTCGCTGCAAGAGCCTCACGAGCCTCAAGCTCCGCGGCTGCCGGGAAATCACCAACCTCGGAATGGCGGCGTTCGCTCAGAATTCTACTGGATTGAATAAGCTCTCCTTCGGGTCGTGCATGTTCGGCGCCAAGGCCATGAACGCCGTGCTTGAGTACTGCACGGCGCTCGAGGAGCTATCGGTGAAGCGGCTCCGGGGGATCCACGACGCGTCGGAGCAGATCGGAGCCGGCAAAACGCCGTCGACGCTGAAATCCATCTATACTGAATGGCCAGTGCTTTGGACCGCTGATTGTAAGCTCGAAAAACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

202

Amino Acids

22.34

Weight (kDa)

6.32

Isoelectric Point (pI)

48.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	422
AccI	GTMKAC	1 cut(s)	539
AccII	CGCG	3 cut(s)	147, 330, 506
AciI	CCGC	8 cut(s)	35, 58, 98, 328, 330, 362, 484, 582
AclWI	GGATC	3 cut(s)	191, 490, 503
AcoI	YGGCCR	1 cut(s)	566
AcsI	RAATTY	1 cut(s)	376
AcyI	GRCGYC	1 cut(s)	423
AfaI	GTAC	1 cut(s)	452
AfiI	CCNNNNNNNGG	2 cut(s)	213, 358
AflIII	ACRYGT	1 cut(s)	504
AgeI	ACCGGT	1 cut(s)	82
AgsI	TTSAA	3 cut(s)	18, 73, 391
AluBI	AGCT	6 cut(s)	69, 225, 325, 397, 472, 595
AluI	AGCT	6 cut(s)	69, 225, 325, 397, 472, 595
Alw26I	GTCTC	1 cut(s)	125
AlwI	GGATC	3 cut(s)	191, 490, 503
Ama87I	CYCGRG	2 cut(s)	23, 464
AoxI	GGCC	2 cut(s)	429, 566
ApeKI	GCWGC	3 cut(s)	37, 300, 333
ApoI	RAATTY	1 cut(s)	376
AsiGI	ACCGGT	1 cut(s)	82
AspLEI	GCGC	2 cut(s)	425, 463
AspS9I	GGNCC	3 cut(s)	100, 229, 579
AsuC2I	CCSGG	2 cut(s)	338, 491
AsuHPI	GGTGA	2 cut(s)	337, 490
AvaI	CYCGRG	2 cut(s)	23, 464
AvaII	GGWCC	3 cut(s)	100, 229, 579
BalI	TGGCCA	1 cut(s)	568
BamHI	GGATCC	1 cut(s)	495
BanI	GGYRCC	1 cut(s)	422
BauI	CACGAG	2 cut(s)	233, 313
BbvI	GCAGC	3 cut(s)	49, 287, 320
BccI	CCATC	2 cut(s)	134, 560
BceAI	ACGGC	4 cut(s)	111, 425, 474, 520
BcgI	CGANNNNNNTGC	2 cut(s)	445, 479
BcnI	CCSGG	2 cut(s)	338, 491
BcoDI	GTCTC	1 cut(s)	125
BfoI	RGCGCY	2 cut(s)	426, 464
BglII	AGATCT	1 cut(s)	160
BisI	GCNGC	7 cut(s)	38, 58, 301, 331, 334, 363, 485
BlsI	GCNGC	7 cut(s)	39, 59, 302, 332, 335, 364, 486
BmcAI	AGTACT	1 cut(s)	452
Bme1390I	CCNGG	2 cut(s)	338, 491
Bme18I	GGWCC	3 cut(s)	100, 229, 579
BmeT110I	CYCGRG	2 cut(s)	23, 464
BmgT120I	GGNCC	3 cut(s)	100, 229, 579
BmiI	GGNNCC	6 cut(s)	30, 205, 424, 488, 497, 523
BmrFI	CCNGG	2 cut(s)	338, 491
BmsI	GCATC	1 cut(s)	265
BpuEI	CTTGAG	2 cut(s)	305, 467
BpuMI	CCSGG	2 cut(s)	338, 491
Bsa29I	ATCGAT	1 cut(s)	257
BsaHI	GRCGYC	1 cut(s)	423
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	6 cut(s)	24, 199, 328, 352, 426, 490
BsaWI	WCCGGW	3 cut(s)	82, 213, 249
Bsc4I	CCNNNNNNNGG	2 cut(s)	213, 358
Bse118I	RCCGGY	2 cut(s)	82, 524
Bse1I	ACTGG	2 cut(s)	388, 569
BseCI	ATCGAT	1 cut(s)	257
BseDI	CCNNGG	6 cut(s)	24, 199, 328, 352, 426, 490
BseLI	CCNNNNNNNGG	2 cut(s)	213, 358
BseMII	CTCAG	1 cut(s)	386
BseNI	ACTGG	2 cut(s)	388, 569
BseRI	GAGGAG	1 cut(s)	482
BseXI	GCAGC	3 cut(s)	49, 287, 320
BseYI	CCCAGC	1 cut(s)	53
BsgI	GTGCAG	1 cut(s)	439
Bsh1236I	CGCG	3 cut(s)	147, 330, 506
Bsh1285I	CGRYCG	1 cut(s)	214
BshFI	GGCC	2 cut(s)	431, 568
BshNI	GGYRCC	1 cut(s)	422
BshTI	ACCGGT	1 cut(s)	82
BshVI	ATCGAT	1 cut(s)	257
BsiEI	CGRYCG	1 cut(s)	214
BsiHKCI	CYCGRG	2 cut(s)	23, 464
BsiSI	CCGG	7 cut(s)	83, 207, 214, 250, 337, 490, 525
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	2 cut(s)	213, 358
BsmAI	GTCTC	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	2 cut(s)	431, 568
Bso31I	GGTCTC	1 cut(s)	125
BsoBI	CYCGRG	2 cut(s)	23, 464
Bsp143I	GATC	5 cut(s)	160, 183, 288, 495, 516
Bsp68I	TCGCGA	1 cut(s)	147
BspACI	CCGC	8 cut(s)	35, 58, 98, 328, 330, 362, 484, 582
BspANI	GGCC	2 cut(s)	431, 568
BspCNI	CTCAG	1 cut(s)	385
BspDI	ATCGAT	1 cut(s)	257
BspFNI	CGCG	3 cut(s)	147, 330, 506
BspLI	GGNNCC	6 cut(s)	30, 205, 424, 488, 497, 523
BspPI	GGATC	3 cut(s)	191, 490, 503
BspT107I	GGYRCC	1 cut(s)	422
BspTNI	GGTCTC	1 cut(s)	125
BsrFI	RCCGGY	2 cut(s)	82, 524
BsrI	ACTGG	2 cut(s)	388, 569
BssAI	RCCGGY	2 cut(s)	82, 524
BssECI	CCNNGG	6 cut(s)	24, 199, 328, 352, 426, 490
BssMI	GATC	5 cut(s)	160, 183, 288, 495, 516
BssNI	GRCGYC	1 cut(s)	423
BssSI	CACGAG	2 cut(s)	233, 313
BssT1I	CCWWGG	1 cut(s)	426
Bst2BI	CACGAG	2 cut(s)	233, 313
Bst4CI	ACNGT	3 cut(s)	9, 125, 136
Bst6I	CTCTTC	1 cut(s)	19
BstACI	GRCGYC	1 cut(s)	423
BstC8I	GCNNGC	1 cut(s)	526
BstDEI	CTNAG	2 cut(s)	157, 372
BstDSI	CCRYGG	1 cut(s)	328
BstFNI	CGCG	3 cut(s)	147, 330, 506
BstH2I	RGCGCY	2 cut(s)	426, 464
BstHHI	GCGC	2 cut(s)	425, 463
BstKTI	GATC	5 cut(s)	163, 186, 291, 498, 519
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	5 cut(s)	160, 183, 288, 495, 516
BstMCI	CGRYCG	1 cut(s)	214
BstMWI	GCNNNNNNNGC	8 cut(s)	66, 306, 315, 368, 420, 437, 469, 541
BstNSI	RCATGY	1 cut(s)	418
BstSCI	CCNGG	2 cut(s)	336, 489
BstUI	CGCG	3 cut(s)	147, 330, 506
BstV1I	GCAGC	3 cut(s)	49, 287, 320
BstX2I	RGATCY	2 cut(s)	160, 495
BstXI	CCANNNNNNTGG	1 cut(s)	576
BstYI	RGATCY	2 cut(s)	160, 495
Bsu15I	ATCGAT	1 cut(s)	257
BsuRI	GGCC	2 cut(s)	431, 568
BsuTUI	ATCGAT	1 cut(s)	257
BtgI	CCRYGG	1 cut(s)	328
BtsIMutI	CAGTG	1 cut(s)	576
BtuMI	TCGCGA	1 cut(s)	147
Cac8I	GCNNGC	1 cut(s)	526
CfoI	GCGC	2 cut(s)	425, 463
Cfr10I	RCCGGY	2 cut(s)	82, 524
Cfr13I	GGNCC	3 cut(s)	100, 229, 579
Cfr42I	CCGCGG	1 cut(s)	331
ClaI	ATCGAT	1 cut(s)	257
CseI	GACGC	3 cut(s)	495, 512, 550
Csp6I	GTAC	1 cut(s)	451
CspAI	ACCGGT	1 cut(s)	82
CviAII	CATG	2 cut(s)	415, 433
CviQI	GTAC	1 cut(s)	451
DdeI	CTNAG	2 cut(s)	157, 372
DinI	GGCGCC	1 cut(s)	424
DpnI	GATC	5 cut(s)	162, 185, 290, 497, 518
DpnII	GATC	5 cut(s)	160, 183, 288, 495, 516
EaeI	YGGCCR	1 cut(s)	566
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
EciI	GGCGGA	1 cut(s)	113
Eco130I	CCWWGG	1 cut(s)	426
Eco31I	GGTCTC	1 cut(s)	125
Eco47I	GGWCC	3 cut(s)	100, 229, 579
Eco88I	CYCGRG	2 cut(s)	23, 464
EcoRI	GAATTC	1 cut(s)	376
EcoT14I	CCWWGG	1 cut(s)	426
EgeI	GGCGCC	1 cut(s)	424
EheI	GGCGCC	1 cut(s)	424
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	2 cut(s)	418, 436
FaiI	YATR	6 cut(s)	80, 89, 266, 416, 434, 558
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	2 cut(s)	414, 432
FblI	GTMKAC	1 cut(s)	539
Fnu4HI	GCNGC	7 cut(s)	38, 58, 301, 331, 334, 363, 485
Fsp4HI	GCNGC	7 cut(s)	38, 58, 301, 331, 334, 363, 485
GlaI	GCGC	2 cut(s)	424, 462
GluI	GCNGC	7 cut(s)	38, 58, 301, 331, 334, 363, 485
GsaI	CCCAGC	1 cut(s)	57
HaeII	RGCGCY	2 cut(s)	426, 464
HaeIII	GGCC	2 cut(s)	431, 568
HapII	CCGG	7 cut(s)	83, 207, 214, 250, 337, 490, 525
HgaI	GACGC	3 cut(s)	495, 512, 550
HhaI	GCGC	2 cut(s)	425, 463
Hin1I	GRCGYC	1 cut(s)	423
Hin1II	CATG	2 cut(s)	418, 436
Hin6I	GCGC	2 cut(s)	423, 461
HinP1I	GCGC	2 cut(s)	423, 461
HincII	GTYRAC	2 cut(s)	93, 540
HindII	GTYRAC	2 cut(s)	93, 540
HinfI	GANTC	2 cut(s)	63, 116
HpaII	CCGG	7 cut(s)	83, 207, 214, 250, 337, 490, 525
HphI	GGTGA	2 cut(s)	337, 490
Hpy166II	GTNNAC	2 cut(s)	93, 540
Hpy188I	TCNGA	5 cut(s)	121, 356, 375, 511, 521
Hpy188III	TCNNGA	4 cut(s)	23, 146, 286, 313
Hpy8I	GTNNAC	2 cut(s)	93, 540
Hpy99I	CGWCG	9 cut(s)	113, 116, 140, 173, 275, 506, 511, 541, 544
HpyAV	CCTTC	1 cut(s)	412
HpyCH4III	ACNGT	3 cut(s)	9, 125, 136
HpyCH4V	TGCA	3 cut(s)	303, 414, 456
HpyF10VI	GCNNNNNNNGC	8 cut(s)	66, 306, 315, 368, 420, 437, 469, 541
HpyF3I	CTNAG	2 cut(s)	157, 372
Hsp92I	GRCGYC	1 cut(s)	423
Hsp92II	CATG	2 cut(s)	418, 436
HspAI	GCGC	2 cut(s)	423, 461
KasI	GGCGCC	1 cut(s)	422
KroI	GCCGGC	1 cut(s)	524
KroNI	GCCGGC	1 cut(s)	526
KspI	CCGCGG	1 cut(s)	331
Kzo9I	GATC	5 cut(s)	160, 183, 288, 495, 516
LmnI	GCTCC	7 cut(s)	34, 209, 330, 469, 492, 511, 521
Lsp1109I	GCAGC	3 cut(s)	49, 287, 320
LweI	GCATC	1 cut(s)	265
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	5 cut(s)	162, 185, 290, 497, 518
MboI	GATC	5 cut(s)	160, 183, 288, 495, 516
MboII	GAAGA	1 cut(s)	6
MflI	RGATCY	2 cut(s)	160, 495
MlsI	TGGCCA	1 cut(s)	568
MluCI	AATT	2 cut(s)	18, 376
MluI	ACGCGT	1 cut(s)	504
MluNI	TGGCCA	1 cut(s)	568
Mly113I	GGCGCC	1 cut(s)	423
MmeI	TCCRAC	1 cut(s)	489
MnlI	CCTC	8 cut(s)	19, 22, 209, 242, 320, 329, 362, 460
Mox20I	TGGCCA	1 cut(s)	568
MroNI	GCCGGC	1 cut(s)	524
MscI	TGGCCA	1 cut(s)	568
MseI	TTAA	1 cut(s)	607
Msp20I	TGGCCA	1 cut(s)	568
MspA1I	CMGCKG	2 cut(s)	330, 584
MspI	CCGG	7 cut(s)	83, 207, 214, 250, 337, 490, 525
MspR9I	CCNGG	2 cut(s)	338, 491
MvnI	CGCG	3 cut(s)	147, 330, 506
MwoI	GCNNNNNNNGC	8 cut(s)	66, 306, 315, 368, 420, 437, 469, 541
NaeI	GCCGGC	1 cut(s)	526
NarI	GGCGCC	1 cut(s)	423
NciI	CCSGG	2 cut(s)	338, 491
NdeII	GATC	5 cut(s)	160, 183, 288, 495, 516
NgoMIV	GCCGGC	1 cut(s)	524
NlaIII	CATG	2 cut(s)	418, 436
NlaIV	GGNNCC	6 cut(s)	30, 205, 424, 488, 497, 523
NmeAIII	GCCGAG	1 cut(s)	180
NmuCI	GTSAC	1 cut(s)	245
NruI	TCGCGA	1 cut(s)	147
NspI	RCATGY	1 cut(s)	418
PaeR7I	CTCGAG	1 cut(s)	464
PcsI	WCGNNNNNNNCGW	2 cut(s)	144, 207
PdiI	GCCGGC	1 cut(s)	526
PfeI	GAWTC	2 cut(s)	63, 116
PinAI	ACCGGT	1 cut(s)	82
PkrI	GCNGC	7 cut(s)	39, 59, 302, 332, 335, 364, 486
PluTI	GGCGCC	1 cut(s)	426
PspFI	CCCAGC	1 cut(s)	53
PspN4I	GGNNCC	6 cut(s)	30, 205, 424, 488, 497, 523
PspPI	GGNCC	3 cut(s)	100, 229, 579
PspXI	VCTCGAGB	1 cut(s)	464
PsuI	RGATCY	2 cut(s)	160, 495
RruI	TCGCGA	1 cut(s)	147
RsaI	GTAC	1 cut(s)	452
RsaNI	GTAC	1 cut(s)	451
SacII	CCGCGG	1 cut(s)	331
SalI	GTCGAC	1 cut(s)	538
SaqAI	TTAA	1 cut(s)	607
SatI	GCNGC	7 cut(s)	38, 58, 301, 331, 334, 363, 485
Sau3AI	GATC	5 cut(s)	160, 183, 288, 495, 516
Sau96I	GGNCC	3 cut(s)	100, 229, 579
ScaI	AGTACT	1 cut(s)	452
ScrFI	CCNGG	2 cut(s)	338, 491
SetI	ASST	9 cut(s)	71, 158, 227, 327, 354, 399, 474, 597, 607
SfaNI	GCATC	1 cut(s)	265
SfoI	GGCGCC	1 cut(s)	424
Sfr274I	CTCGAG	1 cut(s)	464
Sfr303I	CCGCGG	1 cut(s)	331
SgrBI	CCGCGG	1 cut(s)	331
SgrDI	CGTCGACG	1 cut(s)	538
SinI	GGWCC	3 cut(s)	100, 229, 579
SlaI	CTCGAG	1 cut(s)	464
SmlI	CTYRAG	3 cut(s)	320, 446, 464
SmoI	CTYRAG	3 cut(s)	320, 446, 464
Sse9I	AATT	2 cut(s)	18, 376
SsiI	CCGC	8 cut(s)	35, 58, 98, 328, 330, 362, 484, 582
SspDI	GGCGCC	1 cut(s)	422
StyD4I	CCNGG	2 cut(s)	336, 489
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	3 cut(s)	9, 125, 136
TaqI	TCGA	6 cut(s)	138, 241, 257, 465, 539, 597
TaqII	GACCGA	1 cut(s)	217
TasI	AATT	2 cut(s)	18, 376
TatI	WGTACW	1 cut(s)	450
TauI	GCSGC	4 cut(s)	60, 333, 365, 487
TfiI	GAWTC	2 cut(s)	63, 116
Tru1I	TTAA	1 cut(s)	607
Tru9I	TTAA	1 cut(s)	607
TscAI	CASTG	1 cut(s)	576
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	3 cut(s)	37, 300, 333
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	1 cut(s)	449
TspGWI	ACGGA	1 cut(s)	283
TspRI	CASTG	1 cut(s)	576
VpaK11BI	GGWCC	3 cut(s)	100, 229, 579
XapI	RAATTY	1 cut(s)	376
XceI	RCATGY	1 cut(s)	418
XcmI	CCANNNNNNNNNTGG	1 cut(s)	355
XhoI	CTCGAG	1 cut(s)	464
XmiI	GTMKAC	1 cut(s)	539
ZrmI	AGTACT	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.