Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

60595332 .. 60598461

Gene Structure 3130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG292300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGGGTGTTTTCCGTGTTTTGATTCCAAAGAGGAGGAGAAGCTGAATCCGGAGAAAGAAAGCGATGATCGGAAGCAGGGTCAACCGACGGTGTCTTCTAACATTACGAGATTGCCTTCCGGAGTTGACAGACTAAGGTCAAGAAGCAATGGGGGGTCAAGAAGGGTGGATGTAGGGTCCAAAATGCCTGATCCCAAGGATGTAGTACCTGGGGGTCAAATTGCTGCCCAAACTTTCACTTTTCGTGAGCTTGTCGCTGCAACAAAAAATTTTAGGCCAGAATCTTTCATAGGAGAAGGGGGTTTTGGGCGTGTCTACAAGGGGCGACTCGAGAGCACCGGTCAAATTGTTGCTGTTAAGCAATTGGATAGGAATGGACTTCAGGGTAATAGAGAGTTTCTAGTTGAGGCACGTCCCTTGTTCAACGATCGCAGGAAGTTTTCAAAATTGGCAGATCCGAGGCTGCAGGGCCGGTATCCAATGAGGGGCCTCTACCAAGCTCTTGCTGTGGCATCCATGTGCATTCAGGAACAAGCCGCCACACGTCCTCTGATTGGGGATGTGGTTACTGCTCTATCTTATCTAGCCAACCAGGCATACGACCCTACCGCCGCATCAGGGCATGGCCATAGAAGTTCTGGAGAAAAGGATGAGAGACGAAGAGATGAGAGAGGTGGAAGGATATTGAGGAATGAGGAAGGAGGAGGATCTGGACGCAAATGGCCGGATTTAGATGGTGGGTCTGAGAAGGATGATTCCCCAAAGGAAACTGCAAGGATGTTAAACCGGGATTTGGATAGAGAACGAGCTGTTGCTGAGGCCAAGATGTGGGGTGAGAATTGGCGAGAGAAGAGACGACAGAGTGCACAGGGCAGTTTTGATGGTACTAATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase

Protein Analysis

298

Amino Acids

33.16

Weight (kDa)

9.44

Isoelectric Point (pI)

51.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	828
AccI	GTMKAC	1 cut(s)	315
AccIII	TCCGGA	2 cut(s)	49, 119
AciI	CCGC	3 cut(s)	537, 609, 612
AclWI	GGATC	3 cut(s)	185, 449, 715
AcoI	YGGCCR	2 cut(s)	625, 722
AcsI	RAATTY	1 cut(s)	268
AcuI	CTGAAG	1 cut(s)	365
AfaI	GTAC	2 cut(s)	207, 886
AfiI	CCNNNNNNNGG	5 cut(s)	485, 554, 618, 793, 828
AflIII	ACRYGT	1 cut(s)	542
AgeI	ACCGGT	1 cut(s)	338
AgsI	TTSAA	2 cut(s)	424, 444
AjiI	CACGTC	2 cut(s)	413, 545
AjnI	CCWGG	2 cut(s)	208, 591
AjuI	GAANNNNNNNTTGG	2 cut(s)	288, 320
AluBI	AGCT	4 cut(s)	43, 250, 500, 809
AluI	AGCT	4 cut(s)	43, 250, 500, 809
Alw21I	GWGCWC	2 cut(s)	338, 868
Alw26I	GTCTC	2 cut(s)	649, 847
Alw44I	GTGCAC	1 cut(s)	864
AlwI	GGATC	3 cut(s)	185, 449, 715
Ama87I	CYCGRG	1 cut(s)	329
Aor13HI	TCCGGA	2 cut(s)	49, 119
AoxI	GGCC	6 cut(s)	275, 469, 487, 625, 722, 819
ApaLI	GTGCAC	1 cut(s)	864
ApeKI	GCWGC	3 cut(s)	224, 257, 463
ApoI	RAATTY	1 cut(s)	268
AsiGI	ACCGGT	1 cut(s)	338
AspS9I	GGNCC	3 cut(s)	177, 469, 487
AsuC2I	CCSGG	1 cut(s)	788
AsuHPI	GGTGA	1 cut(s)	845
AvaI	CYCGRG	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	177
BaeGI	GKGCMC	1 cut(s)	868
BalI	TGGCCA	1 cut(s)	627
BbsI	GAAGAC	1 cut(s)	87
Bbv12I	GWGCWC	2 cut(s)	338, 868
BbvCI	CCTCAGC	1 cut(s)	816
BbvI	GCAGC	3 cut(s)	211, 244, 450
BccI	CCATC	2 cut(s)	728, 875
BciT130I	CCWGG	2 cut(s)	210, 593
BciVI	GTATCC	1 cut(s)	486
BcnI	CCSGG	1 cut(s)	788
BcoDI	GTCTC	2 cut(s)	649, 847
BfaI	CTAG	2 cut(s)	401, 584
BfmI	CTRYAG	1 cut(s)	464
BfuI	GTATCC	1 cut(s)	486
BglI	GCCNNNNNGGC	1 cut(s)	593
BisI	GCNGC	5 cut(s)	225, 258, 464, 537, 612
BlsI	GCNGC	5 cut(s)	226, 259, 465, 538, 613
Bme1390I	CCNGG	3 cut(s)	210, 593, 788
Bme18I	GGWCC	1 cut(s)	177
BmeT110I	CYCGRG	1 cut(s)	329
BmgBI	CACGTC	2 cut(s)	413, 545
BmgT120I	GGNCC	3 cut(s)	177, 469, 487
BmiI	GGNNCC	2 cut(s)	178, 488
BmrFI	CCNGG	3 cut(s)	210, 593, 788
BmsI	GCATC	2 cut(s)	521, 623
BoxI	GACNNNNGTC	1 cut(s)	136
BpiI	GAAGAC	1 cut(s)	87
BpmI	CTGGAG	1 cut(s)	660
Bpu10I	CCTNAGC	1 cut(s)	816
BpuMI	CCSGG	1 cut(s)	788
BsaJI	CCNNGG	3 cut(s)	195, 209, 458
BsaWI	WCCGGW	3 cut(s)	49, 119, 338
Bsc4I	CCNNNNNNNGG	5 cut(s)	485, 554, 618, 793, 828
Bse118I	RCCGGY	2 cut(s)	338, 471
Bse3DI	GCAATG	1 cut(s)	154
BseAI	TCCGGA	2 cut(s)	49, 119
BseBI	CCWGG	2 cut(s)	210, 593
BseDI	CCNNGG	3 cut(s)	195, 209, 458
BseGI	GGATG	7 cut(s)	175, 205, 512, 565, 655, 757, 783
BseLI	CCNNNNNNNGG	5 cut(s)	485, 554, 618, 793, 828
BseMI	GCAATG	1 cut(s)	154
BseMII	CTCAG	2 cut(s)	735, 807
BseRI	GAGGAG	3 cut(s)	47, 50, 717
BseSI	GKGCMC	1 cut(s)	868
BseXI	GCAGC	3 cut(s)	211, 244, 450
Bsh1285I	CGRYCG	1 cut(s)	430
BshFI	GGCC	6 cut(s)	277, 471, 489, 627, 724, 821
BshTI	ACCGGT	1 cut(s)	338
BsiEI	CGRYCG	1 cut(s)	430
BsiHKAI	GWGCWC	2 cut(s)	338, 868
BsiHKCI	CYCGRG	1 cut(s)	329
BsiSI	CCGG	6 cut(s)	50, 120, 339, 472, 725, 787
BslFI	GGGAC	1 cut(s)	399
BslI	CCNNNNNNNGG	5 cut(s)	485, 554, 618, 793, 828
BsmAI	GTCTC	2 cut(s)	649, 847
BsmBI	CGTCTC	2 cut(s)	649, 847
BsmFI	GGGAC	1 cut(s)	399
BsmI	GAATGC	1 cut(s)	522
BsnI	GGCC	6 cut(s)	277, 471, 489, 627, 724, 821
BsoBI	CYCGRG	1 cut(s)	329
Bsp1286I	GDGCHC	2 cut(s)	338, 868
Bsp13I	TCCGGA	2 cut(s)	49, 119
Bsp143I	GATC	5 cut(s)	67, 190, 427, 454, 707
BspACI	CCGC	3 cut(s)	537, 609, 612
BspANI	GGCC	6 cut(s)	277, 471, 489, 627, 724, 821
BspCNI	CTCAG	2 cut(s)	736, 808
BspEI	TCCGGA	2 cut(s)	49, 119
BspLI	GGNNCC	2 cut(s)	178, 488
BspMAI	CTGCAG	1 cut(s)	468
BspPI	GGATC	3 cut(s)	185, 449, 715
BsrDI	GCAATG	1 cut(s)	154
BsrFI	RCCGGY	2 cut(s)	338, 471
BssAI	RCCGGY	2 cut(s)	338, 471
BssECI	CCNNGG	3 cut(s)	195, 209, 458
BssMI	GATC	5 cut(s)	67, 190, 427, 454, 707
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	2 cut(s)	210, 593
Bst4CI	ACNGT	1 cut(s)	91
Bst6I	CTCTTC	2 cut(s)	655, 845
BstDEI	CTNAG	3 cut(s)	134, 744, 816
BstF5I	GGATG	7 cut(s)	175, 205, 512, 565, 655, 757, 783
BstKTI	GATC	5 cut(s)	70, 193, 430, 457, 710
BstMAI	GTCTC	2 cut(s)	649, 847
BstMBI	GATC	5 cut(s)	67, 190, 427, 454, 707
BstMCI	CGRYCG	1 cut(s)	430
BstMWI	GCNNNNNNNGC	1 cut(s)	593
BstNI	CCWGG	2 cut(s)	210, 593
BstPAI	GACNNNNGTC	1 cut(s)	136
BstSCI	CCNGG	3 cut(s)	208, 591, 786
BstSFI	CTRYAG	1 cut(s)	464
BstSLI	GKGCMC	1 cut(s)	868
BstV1I	GCAGC	3 cut(s)	211, 244, 450
BstV2I	GAAGAC	1 cut(s)	87
BstX2I	RGATCY	2 cut(s)	454, 707
BstYI	RGATCY	2 cut(s)	454, 707
BsuI	GTATCC	1 cut(s)	486
BsuRI	GGCC	6 cut(s)	277, 471, 489, 627, 724, 821
BtgZI	GCGATG	1 cut(s)	78
BtrI	CACGTC	2 cut(s)	413, 545
BtsCI	GGATG	7 cut(s)	175, 205, 512, 565, 655, 757, 783
Cfr10I	RCCGGY	2 cut(s)	338, 471
Cfr13I	GGNCC	3 cut(s)	177, 469, 487
CseI	GACGC	1 cut(s)	723
Csp6I	GTAC	2 cut(s)	206, 885
CspAI	ACCGGT	1 cut(s)	338
CspCI	CAANNNNNGTGG	2 cut(s)	147, 182
CviAII	CATG	2 cut(s)	517, 623
CviQI	GTAC	2 cut(s)	206, 885
DdeI	CTNAG	3 cut(s)	134, 744, 816
DpnI	GATC	5 cut(s)	69, 192, 429, 456, 709
DpnII	GATC	5 cut(s)	67, 190, 427, 454, 707
EaeI	YGGCCR	2 cut(s)	625, 722
Eam1104I	CTCTTC	2 cut(s)	655, 845
EarI	CTCTTC	2 cut(s)	655, 845
Eco130I	CCWWGG	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	177
Eco57I	CTGAAG	1 cut(s)	365
Eco88I	CYCGRG	1 cut(s)	329
EcoO109I	RGGNCCY	1 cut(s)	487
EcoRII	CCWGG	2 cut(s)	208, 591
EcoT14I	CCWWGG	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	195
Esp3I	CGTCTC	2 cut(s)	649, 847
FaeI	CATG	2 cut(s)	520, 626
FaiI	YATR	5 cut(s)	290, 518, 598, 624, 630
FaqI	GGGAC	1 cut(s)	399
FatI	CATG	2 cut(s)	516, 622
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	5 cut(s)	225, 258, 464, 537, 612
FokI	GGATG	7 cut(s)	182, 212, 499, 572, 662, 764, 790
Fsp4HI	GCNGC	5 cut(s)	225, 258, 464, 537, 612
FspBI	CTAG	2 cut(s)	401, 584
GluI	GCNGC	5 cut(s)	225, 258, 464, 537, 612
GsuI	CTGGAG	1 cut(s)	660
HaeIII	GGCC	6 cut(s)	277, 471, 489, 627, 724, 821
HapII	CCGG	6 cut(s)	50, 120, 339, 472, 725, 787
HgaI	GACGC	1 cut(s)	723
Hin1II	CATG	2 cut(s)	520, 626
HincII	GTYRAC	2 cut(s)	83, 127
HindII	GTYRAC	2 cut(s)	83, 127
HinfI	GANTC	5 cut(s)	23, 46, 281, 327, 755
HpaII	CCGG	6 cut(s)	50, 120, 339, 472, 725, 787
HphI	GGTGA	1 cut(s)	845
Hpy166II	GTNNAC	4 cut(s)	83, 127, 316, 866
Hpy188I	TCNGA	4 cut(s)	72, 459, 552, 745
Hpy188III	TCNNGA	9 cut(s)	50, 120, 141, 159, 245, 331, 527, 639, 711
Hpy8I	GTNNAC	4 cut(s)	83, 127, 316, 866
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	6 cut(s)	126, 156, 290, 672, 692, 742
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4IV	ACGT	2 cut(s)	412, 544
HpyCH4V	TGCA	5 cut(s)	260, 466, 522, 773, 866
HpyF10VI	GCNNNNNNNGC	1 cut(s)	593
HpyF3I	CTNAG	3 cut(s)	134, 744, 816
HpySE526I	ACGT	2 cut(s)	412, 544
Hsp92II	CATG	2 cut(s)	520, 626
Kpn2I	TCCGGA	2 cut(s)	49, 119
Kzo9I	GATC	5 cut(s)	67, 190, 427, 454, 707
Lsp1109I	GCAGC	3 cut(s)	211, 244, 450
LweI	GCATC	2 cut(s)	521, 623
MaeI	CTAG	2 cut(s)	401, 584
MaeII	ACGT	2 cut(s)	412, 544
MaeIII	GTNAC	1 cut(s)	565
MalI	GATC	5 cut(s)	69, 192, 429, 456, 709
MboI	GATC	5 cut(s)	67, 190, 427, 454, 707
MboII	GAAGA	3 cut(s)	87, 672, 862
MfeI	CAATTG	1 cut(s)	362
MflI	RGATCY	2 cut(s)	454, 707
MhlI	GDGCHC	2 cut(s)	338, 868
MlsI	TGGCCA	1 cut(s)	627
MluCI	AATT	7 cut(s)	219, 268, 345, 362, 446, 838, 889
MluNI	TGGCCA	1 cut(s)	627
MlyI	GAGTC	1 cut(s)	321
Mox20I	TGGCCA	1 cut(s)	627
MroI	TCCGGA	2 cut(s)	49, 119
MscI	TGGCCA	1 cut(s)	627
MseI	TTAA	2 cut(s)	357, 782
MslI	CAYNNNNRTG	1 cut(s)	517
Msp20I	TGGCCA	1 cut(s)	627
MspI	CCGG	6 cut(s)	50, 120, 339, 472, 725, 787
MspR9I	CCNGG	3 cut(s)	210, 593, 788
MunI	CAATTG	1 cut(s)	362
Mva1269I	GAATGC	1 cut(s)	522
MvaI	CCWGG	2 cut(s)	210, 593
MwoI	GCNNNNNNNGC	1 cut(s)	593
NciI	CCSGG	1 cut(s)	788
NdeII	GATC	5 cut(s)	67, 190, 427, 454, 707
NlaIII	CATG	2 cut(s)	520, 626
NlaIV	GGNNCC	2 cut(s)	178, 488
PaeR7I	CTCGAG	1 cut(s)	329
PctI	GAATGC	1 cut(s)	522
PfeI	GAWTC	4 cut(s)	23, 46, 281, 755
PflFI	GACNNNGTC	1 cut(s)	91
PflMI	CCANNNNNTGG	1 cut(s)	828
PinAI	ACCGGT	1 cut(s)	338
PkrI	GCNGC	5 cut(s)	226, 259, 465, 538, 613
Ple19I	CGATCG	1 cut(s)	430
PleI	GAGTC	1 cut(s)	321
PpsI	GAGTC	1 cut(s)	321
PshAI	GACNNNNGTC	1 cut(s)	136
Psp6I	CCWGG	2 cut(s)	208, 591
PspGI	CCWGG	2 cut(s)	208, 591
PspN4I	GGNNCC	2 cut(s)	178, 488
PspPI	GGNCC	3 cut(s)	177, 469, 487
PstI	CTGCAG	1 cut(s)	468
PsuI	RGATCY	2 cut(s)	454, 707
PsyI	GACNNNGTC	1 cut(s)	91
PvuI	CGATCG	1 cut(s)	430
RsaI	GTAC	2 cut(s)	207, 886
RsaNI	GTAC	2 cut(s)	206, 885
RseI	CAYNNNNRTG	1 cut(s)	517
SaqAI	TTAA	2 cut(s)	357, 782
SatI	GCNGC	5 cut(s)	225, 258, 464, 537, 612
Sau3AI	GATC	5 cut(s)	67, 190, 427, 454, 707
Sau96I	GGNCC	3 cut(s)	177, 469, 487
SchI	GAGTC	1 cut(s)	321
ScrFI	CCNGG	3 cut(s)	210, 593, 788
SduI	GDGCHC	2 cut(s)	338, 868
SetI	ASST	9 cut(s)	45, 140, 211, 252, 415, 502, 547, 676, 811
SfaNI	GCATC	2 cut(s)	521, 623
SfcI	CTRYAG	1 cut(s)	464
Sfr274I	CTCGAG	1 cut(s)	329
SinI	GGWCC	1 cut(s)	177
SlaI	CTCGAG	1 cut(s)	329
SmiMI	CAYNNNNRTG	1 cut(s)	517
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	7 cut(s)	219, 268, 345, 362, 446, 838, 889
SsiI	CCGC	3 cut(s)	537, 609, 612
SspMI	CTAG	2 cut(s)	401, 584
StyD4I	CCNGG	3 cut(s)	208, 591, 786
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	91
TaiI	ACGT	2 cut(s)	415, 547
TaqI	TCGA	1 cut(s)	330
TasI	AATT	7 cut(s)	219, 268, 345, 362, 446, 838, 889
TauI	GCSGC	2 cut(s)	539, 614
TfiI	GAWTC	4 cut(s)	23, 46, 281, 755
Tru1I	TTAA	2 cut(s)	357, 782
Tru9I	TTAA	2 cut(s)	357, 782
TseI	GCWGC	3 cut(s)	224, 257, 463
TspDTI	ATGAA	1 cut(s)	277
Tth111I	GACNNNGTC	1 cut(s)	91
Van91I	CCANNNNNTGG	1 cut(s)	828
VneI	GTGCAC	1 cut(s)	864
VpaK11BI	GGWCC	1 cut(s)	177
XapI	RAATTY	1 cut(s)	268
XcmI	CCANNNNNNNNNTGG	1 cut(s)	635
XhoI	CTCGAG	1 cut(s)	329
XmiI	GTMKAC	1 cut(s)	315
XspI	CTAG	2 cut(s)	401, 584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.