Rh4AG313200
TCP Family

TCP-1/cpn60 chaperonin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
N/A
Physical Location & Seq
Reverse (-)
62366541 .. 62371001
4461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG313200.1

Sequence Viewer

Length: 1257 bp
ATGGCGCTGGCTTTCGATGAGTTCGGCCGGCCATTCATAATCCTGAGGGAGCAGGAGCAGAAGTCCCGATTGAGAGGCCTCGATGCTCAGAAGGCCAACATTGCCGCCGGCAAGGCCGTCGCCAAAATCCTCCGAACCTCGCTCGGACCCAAAGGCATGGACAAGATGCTCCAGAGCCCCGACGGCGAGGTCACCGTCACAAATGATGGTGCCACGATCTTGGAGCAGATGGATGTTGACAATCAAATTGCAAAGCTGATGGTTGAACTGTCGCAGAGTCAGGACTATGAAATTGGTGATGGGACAACTGGAGTTGTTGTGTTGGCTGGTTCACTTCTAGAGCAGGCTGAGCGGCTCTTGGAGCGCGGTATTCATCCCATTAGGGTTGCAGAGGGATATGAGATGGCATCCAGGATTGCTGTTGATCATTTGCAGCATATATCAAAGAAATTTGAATTTGGACTGGAAAATATTGAGCCTTTGGTTCAGACTTGCATGACTACTTTGTCATCAAAGATTGTCAATCGGTGCAAGCGTCCCCTTGCTGAGATTGCTGTCAGAGCAGTTCTTGCTGTTGCTGATTTAGAGAGGAAGGATGTGAACCTAGATTTGATTAAAGTAGAGGGGAAAGTAGGGGGAAAATTAGAGGATACTGAGCTGGTTTATGGTATTCTTATTGACAAGGATATGAGCCATCCACAAATGCCCAAGCGTATTGAAGATGCAAAAATTGCTATCTTGACTTGTCCCTTTGAGCCCCCGAAGCCAAAGACAAAGCATAAGGTCGATATTGATACTGTGGAAAAGTTTCAGACTCTGCGTGTGCAAGAACAGGAATACTTTGATCAGATGGTTCAAAAATGCAAGGATGCCGGTGCTACCTTGGTCATCTGCCAATGGGGGTTTGATGATGAAGCCAATCACCTATTGATGCACAGGAACTTGCCTGCTGTCAGATGGGTTGGTGGTGTTGAGTTGGAACTAATTGCAATAGCTACAGGGGGAAGAATTGTGCCCAGGTTCCAAGAGTTGACACCAGATAAGTTGGGGAAGGCTGGCTTGGTTCGTGAAAAATCATTTGGTACTACAAAAGATCGAATGCTGTACATTGAACACTGTGCAAATTCAAGGGCTGTAACCATATTTATCCGCGGAGGTATGGTTCTATTTTACTTTTTGTGTTCCTTTTACCTCCAACTTGAATCAGCATGTCAATTGAGTGGAAATGGTGCGTATAAGATGAACCCTTTTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cpn60_TCP1

Protein Analysis

418

Amino Acids

46.69

Weight (kDa)

6.14

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 40 - 386 9.7e-115 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 188, 505
AccB1I GGYRCC 1 cut(s) 209
AccBSI CCGCTC 1 cut(s) 352
AccII CGCG 2 cut(s) 366, 1152
AciI CCGC 5 cut(s) 105, 352, 366, 1150, 1152
AcoI YGGCCR 2 cut(s) 25, 29
AcsI RAATTY 3 cut(s) 449, 455, 1123
AfaI GTAC 2 cut(s) 1084, 1106
AgsI TTSAA 7 cut(s) 266, 455, 719, 857, 1112, 1128, 1202
AjnI CCWGG 2 cut(s) 410, 1016
AjuI GAANNNNNNNTTGG 4 cut(s) 1043, 1062, 1075, 1094
AloI GAACNNNNNNTCC 2 cut(s) 1146, 1178
AluBI AGCT 3 cut(s) 256, 658, 995
AluI AGCT 3 cut(s) 256, 658, 995
AlwNI CAGNNNCTG 1 cut(s) 817
AoxI GGCC 5 cut(s) 25, 29, 76, 93, 114
ApeKI GCWGC 1 cut(s) 433
ApoI RAATTY 3 cut(s) 449, 455, 1123
Asp700I GAANNNNTTC 1 cut(s) 807
AspLEI GCGC 2 cut(s) 7, 366
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 3 cut(s) 184, 308, 914
AvaII GGWCC 1 cut(s) 146
AxyI CCTNAGG 1 cut(s) 44
BaeGI GKGCMC 1 cut(s) 1017
BanI GGYRCC 1 cut(s) 209
BanII GRGCYC 2 cut(s) 179, 759
BbvI GCAGC 1 cut(s) 445
BccI CCATC 8 cut(s) 200, 223, 253, 293, 397, 702, 844, 951
BceAI ACGGC 2 cut(s) 101, 199
BcgI CGANNNNNNTGC 2 cut(s) 100, 134
BciT130I CCWGG 2 cut(s) 412, 1018
BciVI GTATCC 1 cut(s) 643
BclI TGATCA 2 cut(s) 424, 844
BfaI CTAG 2 cut(s) 338, 605
BfmI CTRYAG 1 cut(s) 996
BfoI RGCGCY 1 cut(s) 8
BfuI GTATCC 1 cut(s) 643
BglI GCCNNNNNGGC 2 cut(s) 113, 183
BisI GCNGC 3 cut(s) 105, 353, 434
BlpI GCTNAGC 1 cut(s) 348
BlsI GCNGC 3 cut(s) 106, 354, 435
Bme1390I CCNGG 2 cut(s) 412, 1018
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 3 cut(s) 148, 211, 1022
BmrFI CCNGG 2 cut(s) 412, 1018
BmsI GCATC 6 cut(s) 73, 156, 416, 712, 859, 921
BpmI CTGGAG 2 cut(s) 155, 330
Bpu1102I GCTNAGC 1 cut(s) 348
BsaJI CCNNGG 3 cut(s) 882, 1016, 1150
BsaXI ACNNNNNCTCC 6 cut(s) 47, 77, 303, 333, 1146, 1176
Bse118I RCCGGY 3 cut(s) 27, 107, 872
Bse1I ACTGG 2 cut(s) 313, 468
Bse21I CCTNAGG 1 cut(s) 44
Bse3DI GCAATG 1 cut(s) 99
BseBI CCWGG 2 cut(s) 412, 1018
BseDI CCNNGG 3 cut(s) 882, 1016, 1150
BseGI GGATG 6 cut(s) 238, 373, 407, 601, 694, 874
BseMI GCAATG 1 cut(s) 99
BseMII CTCAG 5 cut(s) 35, 101, 339, 537, 645
BseNI ACTGG 2 cut(s) 313, 468
BseSI GKGCMC 1 cut(s) 1017
BseX3I CGGCCG 1 cut(s) 25
BseXI GCAGC 1 cut(s) 445
Bsh1236I CGCG 2 cut(s) 366, 1152
Bsh1285I CGRYCG 1 cut(s) 28
BshFI GGCC 5 cut(s) 27, 31, 78, 95, 116
BshNI GGYRCC 1 cut(s) 209
BsiEI CGRYCG 1 cut(s) 28
BsiSI CCGG 3 cut(s) 28, 108, 873
BslFI GGGAC 4 cut(s) 49, 316, 522, 732
BsmFI GGGAC 4 cut(s) 49, 316, 522, 732
BsmI GAATGC 1 cut(s) 1104
BsnI GGCC 5 cut(s) 27, 31, 78, 95, 116
Bsp1286I GDGCHC 3 cut(s) 179, 759, 1017
Bsp1407I TGTACA 1 cut(s) 1104
Bsp143I GATC 4 cut(s) 216, 424, 844, 1093
Bsp1720I GCTNAGC 1 cut(s) 348
BspACI CCGC 5 cut(s) 105, 352, 366, 1150, 1152
BspANI GGCC 5 cut(s) 27, 31, 78, 95, 116
BspCNI CTCAG 5 cut(s) 36, 100, 340, 538, 646
BspFNI CGCG 2 cut(s) 366, 1152
BspLI GGNNCC 3 cut(s) 148, 211, 1022
BspT107I GGYRCC 1 cut(s) 209
BsrBI CCGCTC 1 cut(s) 352
BsrDI GCAATG 1 cut(s) 99
BsrFI RCCGGY 3 cut(s) 27, 107, 872
BsrGI TGTACA 1 cut(s) 1104
BsrI ACTGG 2 cut(s) 313, 468
BssAI RCCGGY 3 cut(s) 27, 107, 872
BssECI CCNNGG 3 cut(s) 882, 1016, 1150
BssMI GATC 4 cut(s) 216, 424, 844, 1093
BssT1I CCWWGG 1 cut(s) 882
Bst2UI CCWGG 2 cut(s) 412, 1018
Bst4CI ACNGT 4 cut(s) 196, 270, 799, 1118
BstAPI GCANNNNNTGC 2 cut(s) 569, 731
BstAUI TGTACA 1 cut(s) 1104
BstC8I GCNNGC 7 cut(s) 9, 29, 109, 345, 533, 948, 1057
BstDEI CTNAG 5 cut(s) 44, 87, 348, 546, 654
BstDSI CCRYGG 1 cut(s) 1150
BstEII GGTNACC 1 cut(s) 190
BstF5I GGATG 6 cut(s) 238, 373, 407, 601, 694, 874
BstFNI CGCG 2 cut(s) 366, 1152
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 366
BstKTI GATC 4 cut(s) 219, 427, 847, 1096
BstMBI GATC 4 cut(s) 216, 424, 844, 1093
BstMCI CGRYCG 1 cut(s) 28
BstNI CCWGG 2 cut(s) 412, 1018
BstNSI RCATGY 1 cut(s) 1212
BstPI GGTNACC 1 cut(s) 190
BstSCI CCNGG 2 cut(s) 410, 1016
BstSFI CTRYAG 1 cut(s) 996
BstSLI GKGCMC 1 cut(s) 1017
BstUI CGCG 2 cut(s) 366, 1152
BstV1I GCAGC 1 cut(s) 445
BstXI CCANNNNNNTGG 2 cut(s) 157, 220
BstZI CGGCCG 1 cut(s) 25
Bsu36I CCTNAGG 1 cut(s) 44
BsuI GTATCC 1 cut(s) 643
BsuRI GGCC 5 cut(s) 27, 31, 78, 95, 116
BtgI CCRYGG 1 cut(s) 1150
BtsCI GGATG 6 cut(s) 238, 373, 407, 601, 694, 874
BtsIMutI CAGTG 1 cut(s) 1114
Cac8I GCNNGC 7 cut(s) 9, 29, 109, 345, 533, 948, 1057
CaiI CAGNNNCTG 1 cut(s) 817
CfoI GCGC 2 cut(s) 7, 366
Cfr10I RCCGGY 3 cut(s) 27, 107, 872
Cfr13I GGNCC 1 cut(s) 146
Cfr42I CCGCGG 1 cut(s) 1153
CseI GACGC 1 cut(s) 524
Csp6I GTAC 2 cut(s) 1083, 1105
CviAII CATG 3 cut(s) 157, 496, 1209
CviQI GTAC 2 cut(s) 1083, 1105
DdeI CTNAG 5 cut(s) 44, 87, 348, 546, 654
DpnI GATC 4 cut(s) 218, 426, 846, 1095
DpnII GATC 4 cut(s) 216, 424, 844, 1093
DrdI GACNNNNNNGTC 2 cut(s) 188, 505
DseDI GACNNNNNNGTC 2 cut(s) 188, 505
EaeI YGGCCR 2 cut(s) 25, 29
EagI CGGCCG 1 cut(s) 25
EclXI CGGCCG 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 882
Eco147I AGGCCT 1 cut(s) 78
Eco24I GRGCYC 2 cut(s) 179, 759
Eco47I GGWCC 1 cut(s) 146
Eco52I CGGCCG 1 cut(s) 25
Eco81I CCTNAGG 1 cut(s) 44
Eco91I GGTNACC 1 cut(s) 190
EcoO65I GGTNACC 1 cut(s) 190
EcoRII CCWGG 2 cut(s) 410, 1016
EcoT14I CCWWGG 1 cut(s) 882
EcoT38I GRGCYC 2 cut(s) 179, 759
ErhI CCWWGG 1 cut(s) 882
FaeI CATG 3 cut(s) 160, 499, 1212
FalI AAGNNNNNCTT 2 cut(s) 1043, 1075
FaqI GGGAC 4 cut(s) 49, 316, 522, 732
FatI CATG 3 cut(s) 156, 495, 1208
FbaI TGATCA 2 cut(s) 424, 844
Fnu4HI GCNGC 3 cut(s) 105, 353, 434
FokI GGATG 6 cut(s) 245, 360, 394, 608, 681, 881
FriOI GRGCYC 2 cut(s) 179, 759
FseI GGCCGGCC 1 cut(s) 31
Fsp4HI GCNGC 3 cut(s) 105, 353, 434
FspBI CTAG 2 cut(s) 338, 605
GlaI GCGC 2 cut(s) 6, 365
GluI GCNGC 3 cut(s) 105, 353, 434
GsuI CTGGAG 2 cut(s) 155, 330
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 5 cut(s) 27, 31, 78, 95, 116
HapII CCGG 3 cut(s) 28, 108, 873
HgaI GACGC 1 cut(s) 524
HhaI GCGC 2 cut(s) 7, 366
Hin1II CATG 3 cut(s) 160, 499, 1212
Hin6I GCGC 2 cut(s) 5, 364
HinP1I GCGC 2 cut(s) 5, 364
HincII GTYRAC 2 cut(s) 238, 1032
HindII GTYRAC 2 cut(s) 238, 1032
HinfI GANTC 3 cut(s) 277, 814, 1202
HpaII CCGG 3 cut(s) 28, 108, 873
HphI GGTGA 3 cut(s) 184, 308, 914
Hpy166II GTNNAC 4 cut(s) 238, 332, 601, 1032
Hpy188I TCNGA 8 cut(s) 90, 134, 146, 489, 560, 813, 849, 956
Hpy188III TCNNGA 7 cut(s) 43, 66, 172, 281, 338, 739, 1067
Hpy8I GTNNAC 4 cut(s) 238, 332, 601, 1032
Hpy99I CGWCG 2 cut(s) 122, 185
HpyAV CCTTC 3 cut(s) 85, 586, 1045
HpyCH4III ACNGT 4 cut(s) 196, 270, 799, 1118
HpyF3I CTNAG 5 cut(s) 44, 87, 348, 546, 654
Hsp92II CATG 3 cut(s) 160, 499, 1212
HspAI GCGC 2 cut(s) 5, 364
KroI GCCGGC 2 cut(s) 27, 107
KroNI GCCGGC 2 cut(s) 29, 109
Ksp22I TGATCA 2 cut(s) 424, 844
KspI CCGCGG 1 cut(s) 1153
Kzo9I GATC 4 cut(s) 216, 424, 844, 1093
LmnI GCTCC 5 cut(s) 49, 55, 174, 223, 361
Lsp1109I GCAGC 1 cut(s) 445
LweI GCATC 6 cut(s) 73, 156, 416, 712, 859, 921
MaeI CTAG 2 cut(s) 338, 605
MaeIII GTNAC 3 cut(s) 190, 196, 1135
MalI GATC 4 cut(s) 218, 426, 846, 1095
MbiI CCGCTC 1 cut(s) 352
MboI GATC 4 cut(s) 216, 424, 844, 1093
MboII GAAGA 2 cut(s) 731, 1017
MfeI CAATTG 1 cut(s) 1214
MhlI GDGCHC 3 cut(s) 179, 759, 1017
MlyI GAGTC 2 cut(s) 286, 808
MmeI TCCRAC 2 cut(s) 957, 1219
MroNI GCCGGC 2 cut(s) 27, 107
MroXI GAANNNNTTC 1 cut(s) 807
MseI TTAA 1 cut(s) 615
MspA1I CMGCKG 1 cut(s) 1152
MspI CCGG 3 cut(s) 28, 108, 873
MspR9I CCNGG 2 cut(s) 412, 1018
MunI CAATTG 1 cut(s) 1214
Mva1269I GAATGC 1 cut(s) 1104
MvaI CCWGG 2 cut(s) 412, 1018
MvnI CGCG 2 cut(s) 366, 1152
NaeI GCCGGC 2 cut(s) 29, 109
NdeII GATC 4 cut(s) 216, 424, 844, 1093
NgoMIV GCCGGC 2 cut(s) 27, 107
NlaIII CATG 3 cut(s) 160, 499, 1212
NlaIV GGNNCC 3 cut(s) 148, 211, 1022
NmuCI GTSAC 2 cut(s) 190, 196
NspI RCATGY 1 cut(s) 1212
PceI AGGCCT 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 532
PctI GAATGC 1 cut(s) 1104
PdiI GCCGGC 2 cut(s) 29, 109
PdmI GAANNNNTTC 1 cut(s) 807
PfeI GAWTC 1 cut(s) 1202
PfoI TCCNGGA 1 cut(s) 410
PkrI GCNGC 3 cut(s) 106, 354, 435
PleI GAGTC 2 cut(s) 285, 808
PpsI GAGTC 2 cut(s) 285, 808
Psp6I CCWGG 2 cut(s) 410, 1016
PspEI GGTNACC 1 cut(s) 190
PspGI CCWGG 2 cut(s) 410, 1016
PspN4I GGNNCC 3 cut(s) 148, 211, 1022
PspPI GGNCC 1 cut(s) 146
PstNI CAGNNNCTG 1 cut(s) 817
RigI GGCCGGCC 1 cut(s) 31
RsaI GTAC 2 cut(s) 1084, 1106
RsaNI GTAC 2 cut(s) 1083, 1105
SacII CCGCGG 1 cut(s) 1153
SaqAI TTAA 1 cut(s) 615
SatI GCNGC 3 cut(s) 105, 353, 434
Sau3AI GATC 4 cut(s) 216, 424, 844, 1093
Sau96I GGNCC 1 cut(s) 146
SchI GAGTC 2 cut(s) 286, 808
ScrFI CCNGG 2 cut(s) 412, 1018
SduI GDGCHC 3 cut(s) 179, 759, 1017
SfaNI GCATC 6 cut(s) 73, 156, 416, 712, 859, 921
SfcI CTRYAG 1 cut(s) 996
Sfr303I CCGCGG 1 cut(s) 1153
SgrBI CCGCGG 1 cut(s) 1153
SinI GGWCC 1 cut(s) 146
SseBI AGGCCT 1 cut(s) 78
SsiI CCGC 5 cut(s) 105, 352, 366, 1150, 1152
SspI AATATT 1 cut(s) 472
SspMI CTAG 2 cut(s) 338, 605
StuI AGGCCT 1 cut(s) 78
StyD4I CCNGG 2 cut(s) 410, 1016
StyI CCWWGG 1 cut(s) 882
TaaI ACNGT 4 cut(s) 196, 270, 799, 1118
TaqI TCGA 4 cut(s) 15, 81, 786, 1096
TatI WGTACW 1 cut(s) 1104
TauI GCSGC 2 cut(s) 107, 355
TfiI GAWTC 1 cut(s) 1202
Tru1I TTAA 1 cut(s) 615
Tru9I TTAA 1 cut(s) 615
TscAI CASTG 1 cut(s) 1121
TseFI GTSAC 2 cut(s) 190, 196
TseI GCWGC 1 cut(s) 433
Tsp45I GTSAC 2 cut(s) 190, 196
TspDTI ATGAA 5 cut(s) 25, 303, 362, 927, 1256
TspRI CASTG 1 cut(s) 1121
VpaK11BI GGWCC 1 cut(s) 146
XapI RAATTY 3 cut(s) 449, 455, 1123
XbaI TCTAGA 1 cut(s) 337
XceI RCATGY 1 cut(s) 1212
XmnI GAANNNNTTC 1 cut(s) 807
XspI CTAG 2 cut(s) 338, 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.