Rh4AG324300

Cysteine-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
N/A
Physical Location & Seq
Forward (+)
63609439 .. 63610699
1261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG324300.1

Sequence Viewer

Length: 594 bp
ATGATTTGCACTGGAACACAACATGTTACTGTGATTGCAGAAACTAATTGGTTAGTTTCATCTTTGCAGGGAGTTTTGCCTGATGGGAGAGAGATTGCAGTAAAGAGGCTTTTCTTTAACAATAGGCATAGAGCAGCAGATTTCTATAATGAAATCAACATTATAAGCAGCGTGGAACACAAAAACTTGGTTAGATTGTTGGGTTGCAGTTGCTCAGGACCCGAAAGCCTTCTGGTCTATGAATACCTAGCCAACAAGAGTCTTGACCGCTTCATTTTCGGCACTGTGGAGGAACTATACGACCCAAATTTGATGTTGCAGAATGTCAGCGGTGACGAAGTTAAGGATGAAATATTGAGAGTGGTACAAATAGGACTGTTATGCACCCAAGAGATCCCTACATTACGACCAACAATGTCAAAGGCATTACAGATGCTAACAAAGAAAGAGAACCTTCCTGCACCCAGCAATCCACCTTTCATAGATGAAAAGACCATGGAACTAAATGACACATACGACGACCCATGTTACCCAAATGCAGATGGTTCTGGTTCAGTTGCTAGTGTTACACATAGTTCTTTCTATCCAAGGTGA

Protein Analysis

197

Amino Acids

22.06

Weight (kDa)

4.98

Isoelectric Point (pI)

49.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 28 - 93 5.9e-06 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 30 - 95 2.4e-08 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 164
AciI CCGC 2 cut(s) 268, 330
AclWI GGATC 1 cut(s) 388
AcsI RAATTY 1 cut(s) 307
AfaI GTAC 1 cut(s) 366
AflIII ACRYGT 1 cut(s) 22
AlwI GGATC 1 cut(s) 388
ApeKI GCWGC 2 cut(s) 134, 168
ApoI RAATTY 1 cut(s) 307
Asp700I GAANNNNTTC 1 cut(s) 228
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 344
AvaII GGWCC 1 cut(s) 218
BbvI GCAGC 2 cut(s) 146, 180
BccI CCATC 2 cut(s) 77, 536
BfaI CTAG 2 cut(s) 248, 561
BisI GCNGC 2 cut(s) 135, 169
BlsI GCNGC 2 cut(s) 136, 170
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 1 cut(s) 220
BmsI GCATC 1 cut(s) 423
Bpu10I CCTNAGC 1 cut(s) 214
BsaJI CCNNGG 2 cut(s) 495, 587
Bse1I ACTGG 1 cut(s) 16
BseDI CCNNGG 2 cut(s) 495, 587
BseGI GGATG 1 cut(s) 352
BseMII CTCAG 1 cut(s) 228
BseNI ACTGG 1 cut(s) 16
BseXI GCAGC 2 cut(s) 146, 180
BseYI CCCAGC 1 cut(s) 464
BsgI GTGCAG 1 cut(s) 444
Bsp143I GATC 1 cut(s) 393
Bsp19I CCATGG 1 cut(s) 495
BspACI CCGC 2 cut(s) 268, 330
BspCNI CTCAG 1 cut(s) 227
BspLI GGNNCC 1 cut(s) 220
BspPI GGATC 1 cut(s) 388
BsrI ACTGG 1 cut(s) 16
BssECI CCNNGG 2 cut(s) 495, 587
BssMI GATC 1 cut(s) 393
BssT1I CCWWGG 2 cut(s) 495, 587
Bst4CI ACNGT 3 cut(s) 31, 286, 378
BstDEI CTNAG 1 cut(s) 214
BstDSI CCRYGG 1 cut(s) 495
BstF5I GGATG 1 cut(s) 352
BstKTI GATC 1 cut(s) 396
BstMBI GATC 1 cut(s) 393
BstNSI RCATGY 1 cut(s) 26
BstV1I GCAGC 2 cut(s) 146, 180
BstX2I RGATCY 1 cut(s) 393
BstYI RGATCY 1 cut(s) 393
BtgI CCRYGG 1 cut(s) 495
BtsCI GGATG 1 cut(s) 352
BtsIMutI CAGTG 2 cut(s) 9, 282
Cfr13I GGNCC 1 cut(s) 218
Csp6I GTAC 1 cut(s) 365
CviAII CATG 3 cut(s) 23, 496, 525
CviJI RGCY 3 cut(s) 109, 228, 251
CviKI_1 RGCY 3 cut(s) 109, 228, 251
CviQI GTAC 1 cut(s) 365
DdeI CTNAG 1 cut(s) 214
DpnI GATC 1 cut(s) 395
DpnII GATC 1 cut(s) 393
Eco130I CCWWGG 2 cut(s) 495, 587
Eco47I GGWCC 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 218
EcoT14I CCWWGG 2 cut(s) 495, 587
ErhI CCWWGG 2 cut(s) 495, 587
FaeI CATG 3 cut(s) 26, 499, 528
FalI AAGNNNNNCTT 2 cut(s) 438, 470
FatI CATG 3 cut(s) 22, 495, 524
Fnu4HI GCNGC 2 cut(s) 135, 169
FokI GGATG 1 cut(s) 359
Fsp4HI GCNGC 2 cut(s) 135, 169
FspBI CTAG 2 cut(s) 248, 561
GluI GCNGC 2 cut(s) 135, 169
GsaI CCCAGC 1 cut(s) 468
Hin1II CATG 3 cut(s) 26, 499, 528
HinfI GANTC 1 cut(s) 259
HphI GGTGA 1 cut(s) 344
Hpy188III TCNNGA 2 cut(s) 216, 263
Hpy99I CGWCG 1 cut(s) 521
HpyAV CCTTC 2 cut(s) 239, 464
HpyCH4III ACNGT 3 cut(s) 31, 286, 378
HpyCH4V TGCA 9 cut(s) 9, 38, 67, 98, 207, 319, 384, 461, 539
HpyF3I CTNAG 1 cut(s) 214
Hsp92II CATG 3 cut(s) 26, 499, 528
Kzo9I GATC 1 cut(s) 393
LpnPI CCDG 7 cut(s) 53, 93, 201, 218, 471, 478, 534
Lsp1109I GCAGC 2 cut(s) 146, 180
LweI GCATC 1 cut(s) 423
MaeI CTAG 2 cut(s) 248, 561
MaeIII GTNAC 4 cut(s) 25, 332, 527, 565
MalI GATC 1 cut(s) 395
MboI GATC 1 cut(s) 393
MflI RGATCY 1 cut(s) 393
MluCI AATT 2 cut(s) 46, 307
MlyI GAGTC 1 cut(s) 268
MnlI CCTC 2 cut(s) 99, 283
MroXI GAANNNNTTC 1 cut(s) 228
MseI TTAA 2 cut(s) 117, 342
MspA1I CMGCKG 1 cut(s) 330
NcoI CCATGG 1 cut(s) 495
NdeII GATC 1 cut(s) 393
NlaIII CATG 3 cut(s) 26, 499, 528
NlaIV GGNNCC 1 cut(s) 220
NmuCI GTSAC 1 cut(s) 332
NspI RCATGY 1 cut(s) 26
PciI ACATGT 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 228
PkrI GCNGC 2 cut(s) 136, 170
PleI GAGTC 1 cut(s) 267
PpsI GAGTC 1 cut(s) 267
PpuMI RGGWCCY 1 cut(s) 218
PscI ACATGT 1 cut(s) 22
PsiI TTATAA 1 cut(s) 164
Psp5II RGGWCCY 1 cut(s) 218
PspFI CCCAGC 1 cut(s) 464
PspN4I GGNNCC 1 cut(s) 220
PspPI GGNCC 1 cut(s) 218
PspPPI RGGWCCY 1 cut(s) 218
PsuI RGATCY 1 cut(s) 393
RsaI GTAC 1 cut(s) 366
RsaNI GTAC 1 cut(s) 365
SaqAI TTAA 2 cut(s) 117, 342
SatI GCNGC 2 cut(s) 135, 169
Sau3AI GATC 1 cut(s) 393
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 1 cut(s) 268
SetI ASST 4 cut(s) 249, 456, 478, 593
SfaNI GCATC 1 cut(s) 423
SinI GGWCC 1 cut(s) 218
Sse9I AATT 2 cut(s) 46, 307
SsiI CCGC 2 cut(s) 268, 330
SspI AATATT 1 cut(s) 354
SspMI CTAG 2 cut(s) 248, 561
StyI CCWWGG 2 cut(s) 495, 587
TaaI ACNGT 3 cut(s) 31, 286, 378
TasI AATT 2 cut(s) 46, 307
Tru1I TTAA 2 cut(s) 117, 342
Tru9I TTAA 2 cut(s) 117, 342
TscAI CASTG 2 cut(s) 16, 289
TseFI GTSAC 1 cut(s) 332
TseI GCWGC 2 cut(s) 134, 168
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 7 cut(s) 48, 165, 255, 262, 363, 469, 501
TspRI CASTG 2 cut(s) 16, 289
VpaK11BI GGWCC 1 cut(s) 218
XapI RAATTY 1 cut(s) 307
XceI RCATGY 1 cut(s) 26
XmnI GAANNNNTTC 1 cut(s) 228
XspI CTAG 2 cut(s) 248, 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.