Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

2592676 .. 2593481

Gene Structure 806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG016500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGGGTACCTTTCTTGCAAAGCTGAATCTGCCATCTCTGTCTCCAATTCCCAGACCGCATCATCCCATGAAAAACCCATCAAGATCCAACACTTGGATTATAGTGATCTCGTGGCTGCCACCAATGGCTTCTCTGATCAGAAGCTCTTAGGCAAAGGAAGCCATGGCTATGTCTACAAAGTTGTACTTCGGGGCCGTCGTGTTGCCGTCAATAGACCCTCCAGATCTCATAGCCGAATTCCCAGACCCACTTCGATTTCTGGGCTTGAAGCCACCAACGAGATCGAGATCTTGTCACAGATTCACAGCCCAAGATTGGGCAATCTTTTGTCGAGTTTAAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

115

Amino Acids

12.6

Weight (kDa)

10.16

Isoelectric Point (pI)

45.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	6
AccB1I	GGYRCC	1 cut(s)	6
AccB7I	CCANNNNNTGG	1 cut(s)	94
AccI	GTMKAC	1 cut(s)	174
AciI	CCGC	1 cut(s)	57
AclWI	GGATC	1 cut(s)	79
AcsI	RAATTY	1 cut(s)	237
AfaI	GTAC	2 cut(s)	8, 186
AfiI	CCNNNNNNNGG	3 cut(s)	94, 316, 317
AgsI	TTSAA	1 cut(s)	269
AluBI	AGCT	2 cut(s)	23, 145
AluI	AGCT	2 cut(s)	23, 145
Alw26I	GTCTC	1 cut(s)	46
AlwI	GGATC	1 cut(s)	79
AoxI	GGCC	1 cut(s)	193
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	1 cut(s)	237
Asp718I	GGTACC	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	193
BanI	GGYRCC	1 cut(s)	6
BauI	CACGAG	1 cut(s)	110
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	2 cut(s)	41, 86
BceAI	ACGGC	2 cut(s)	180, 191
BclI	TGATCA	1 cut(s)	136
BcoDI	GTCTC	1 cut(s)	46
BglII	AGATCT	2 cut(s)	224, 288
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	193
BmiI	GGNNCC	2 cut(s)	8, 194
BmsI	GCATC	1 cut(s)	68
BpmI	CTGGAG	1 cut(s)	205
BsaBI	GATNNNNATC	1 cut(s)	287
BsaJI	CCNNGG	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 316, 317
Bse8I	GATNNNNATC	1 cut(s)	287
BseDI	CCNNGG	1 cut(s)	163
BseGI	GGATG	1 cut(s)	62
BseJI	GATNNNNATC	1 cut(s)	287
BseLI	CCNNNNNNNGG	3 cut(s)	94, 316, 317
BseXI	GCAGC	1 cut(s)	103
BshFI	GGCC	1 cut(s)	195
BshNI	GGYRCC	1 cut(s)	6
BslI	CCNNNNNNNGG	3 cut(s)	94, 316, 317
BsmAI	GTCTC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	195
Bsp143I	GATC	6 cut(s)	84, 106, 136, 224, 282, 288
Bsp19I	CCATGG	1 cut(s)	163
BspACI	CCGC	1 cut(s)	57
BspANI	GGCC	1 cut(s)	195
BspLI	GGNNCC	2 cut(s)	8, 194
BspPI	GGATC	1 cut(s)	79
BspT107I	GGYRCC	1 cut(s)	6
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	6 cut(s)	84, 106, 136, 224, 282, 288
BssSI	CACGAG	1 cut(s)	110
BssT1I	CCWWGG	1 cut(s)	163
Bst2BI	CACGAG	1 cut(s)	110
BstDEI	CTNAG	1 cut(s)	148
BstDSI	CCRYGG	1 cut(s)	163
BstF5I	GGATG	1 cut(s)	62
BstKTI	GATC	6 cut(s)	87, 109, 139, 227, 285, 291
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	6 cut(s)	84, 106, 136, 224, 282, 288
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 159
BstV1I	GCAGC	1 cut(s)	103
BstX2I	RGATCY	3 cut(s)	84, 224, 288
BstYI	RGATCY	3 cut(s)	84, 224, 288
BsuRI	GGCC	1 cut(s)	195
BtgI	CCRYGG	1 cut(s)	163
BtsCI	GGATG	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	193
Csp6I	GTAC	2 cut(s)	7, 185
CviAII	CATG	2 cut(s)	68, 164
CviQI	GTAC	2 cut(s)	7, 185
DdeI	CTNAG	1 cut(s)	148
DpnI	GATC	6 cut(s)	86, 108, 138, 226, 284, 290
DpnII	GATC	6 cut(s)	84, 106, 136, 224, 282, 288
Eco130I	CCWWGG	1 cut(s)	163
EcoRI	GAATTC	1 cut(s)	237
EcoT14I	CCWWGG	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	163
FaeI	CATG	2 cut(s)	71, 167
FaiI	YATR	5 cut(s)	69, 102, 165, 171, 231
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FatI	CATG	2 cut(s)	67, 163
FbaI	TGATCA	1 cut(s)	136
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	1 cut(s)	49
Fsp4HI	GCNGC	1 cut(s)	117
GluI	GCNGC	1 cut(s)	117
GsuI	CTGGAG	1 cut(s)	205
HaeIII	GGCC	1 cut(s)	195
Hin1II	CATG	2 cut(s)	71, 167
HinfI	GANTC	2 cut(s)	26, 301
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	2 cut(s)	136, 141
Hpy188III	TCNNGA	3 cut(s)	82, 222, 286
Hpy8I	GTNNAC	1 cut(s)	175
Hpy99I	CGWCG	1 cut(s)	201
HpyCH4V	TGCA	1 cut(s)	18
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 159
HpyF3I	CTNAG	1 cut(s)	148
Hsp92II	CATG	2 cut(s)	71, 167
KpnI	GGTACC	1 cut(s)	10
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	6 cut(s)	84, 106, 136, 224, 282, 288
LpnPI	CCDG	4 cut(s)	65, 235, 246, 256
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	1 cut(s)	68
MaeIII	GTNAC	1 cut(s)	294
MalI	GATC	6 cut(s)	86, 108, 138, 226, 284, 290
MboI	GATC	6 cut(s)	84, 106, 136, 224, 282, 288
MflI	RGATCY	3 cut(s)	84, 224, 288
MluCI	AATT	2 cut(s)	46, 237
MmeI	TCCRAC	1 cut(s)	112
MnlI	CCTC	1 cut(s)	229
MseI	TTAA	1 cut(s)	338
MslI	CAYNNNNRTG	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	29, 159
NcoI	CCATGG	1 cut(s)	163
NdeII	GATC	6 cut(s)	84, 106, 136, 224, 282, 288
NlaIII	CATG	2 cut(s)	71, 167
NlaIV	GGNNCC	2 cut(s)	8, 194
NmuCI	GTSAC	1 cut(s)	294
PcsI	WCGNNNNNNNCGW	1 cut(s)	196
PfeI	GAWTC	2 cut(s)	26, 301
PflMI	CCANNNNNTGG	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	118
PspN4I	GGNNCC	2 cut(s)	8, 194
PspPI	GGNCC	1 cut(s)	193
PsuI	RGATCY	3 cut(s)	84, 224, 288
RsaI	GTAC	2 cut(s)	8, 186
RsaNI	GTAC	2 cut(s)	7, 185
RseI	CAYNNNNRTG	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	338
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	6 cut(s)	84, 106, 136, 224, 282, 288
Sau96I	GGNCC	1 cut(s)	193
SetI	ASST	3 cut(s)	12, 25, 147
SfaNI	GCATC	1 cut(s)	68
SmiMI	CAYNNNNRTG	1 cut(s)	168
Sse9I	AATT	2 cut(s)	46, 237
SsiI	CCGC	1 cut(s)	57
StyI	CCWWGG	1 cut(s)	163
TaqI	TCGA	3 cut(s)	254, 285, 332
TasI	AATT	2 cut(s)	46, 237
TatI	WGTACW	1 cut(s)	184
TfiI	GAWTC	2 cut(s)	26, 301
Tru1I	TTAA	1 cut(s)	338
Tru9I	TTAA	1 cut(s)	338
TseFI	GTSAC	1 cut(s)	294
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	294
TspDTI	ATGAA	1 cut(s)	84
Van91I	CCANNNNNTGG	1 cut(s)	94
XapI	RAATTY	1 cut(s)	237
XmiI	GTMKAC	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.