Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

12896557 .. 12900882

Gene Structure 4326 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG073200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGGGATTTGTTTCAGTGAACACAAGAAGGAATCCAAGTTATCCAAGTTTACTCAGAAAGCCCAACAAGTAGGATATGACTCCTCGGTATCTCAAGCTAACCTGGATAGAACACCATACGATACTCCTTTGGTTACAAAGAATATCAAAGACCTCCGCCAAAGTCCCGGATATGTCAATGTCAACATCTTTACTCACGATGAGATGAGGTTGGCCACAAAAAATTTCAGGCCAGATCTGATTCTTGGTGAAGGTGGGTTTGGAATTGTATACAAGGGAGTCATTGATGACACTGTGAGGCCCGGTTATACGTCCACACAAGTTGCCATTAAGGAGCTTAACCCAGAAGGGTACCAAGGTGATAGGGAATGGCTGGATTTTAATGCGAAGCTTTCAGACTTTGGCCTTGCAAAGGAAGGACCGATGGGAGACCAAACCCATGTTTCAACACGAGTGATGGGAACATACGGATATGCTGCTCCTGAGTATGTAATGACTGGGCATCTAACGGCTCGAAGCGATGTTTATGGATTTGGAGTAGTGCTACTTGAGATGCTCATTGGAGGGAGAGCAATGGATAAGAGCAGGCCCAGCCGAGAACATAATCTAGTTGAATGGGCTCGGCCACTCTTGAATCATAATAAGAAACTTCTGAGGATTGTAGACCCTCGACTGGAAGGGCAGTACTCACTTAAAACTGCACTGAAGGTGGCCCATCTAGCATACCAATGCCTTAGCCAGAACCCGAAAGGGAGACCCCTTATGAGCCAGGTTGTTGAAATCCTTGAGAGTCTTCAAGCACCAGAACAGCATGACCCTTTGCTTCAAAGTGGAGGTAAAGCTGTAACTCTTTATGAGGCTCCCAAGGGAACCTCTGGAACTCATGCTAAGAGAGATGTAAATGGAAAAGATGGTGGAGGGGGAGGAGAGGTAAGGCGAAGGAGCAACCGGGGAAATGAAAGGAGCCACAGTGAGCCTATGAGTGATCATGATCATCATAGCCCGTCCCCAAGTTTTGTGTCTCGGGAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

344

Amino Acids

38.18

Weight (kDa)

8.82

Isoelectric Point (pI)

41.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	128 - 262	4.3e-13	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	128 - 259	1e-13	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	351
AccB1I	GGYRCC	1 cut(s)	351
AccI	GTMKAC	2 cut(s)	270, 663
AciI	CCGC	1 cut(s)	157
AcoI	YGGCCR	2 cut(s)	213, 623
AcsI	RAATTY	1 cut(s)	223
AcuI	CTGAAG	1 cut(s)	725
AfaI	GTAC	2 cut(s)	353, 686
AfiI	CCNNNNNNNGG	2 cut(s)	412, 673
AgsI	TTSAA	6 cut(s)	447, 614, 634, 779, 797, 827
AjnI	CCWGG	2 cut(s)	102, 768
AjuI	GAANNNNNNNTTGG	2 cut(s)	243, 275
AluBI	AGCT	4 cut(s)	98, 337, 391, 842
AluI	AGCT	4 cut(s)	98, 337, 391, 842
Alw26I	GTCTC	3 cut(s)	423, 748, 1026
Ama87I	CYCGRG	1 cut(s)	1023
AoxI	GGCC	7 cut(s)	213, 230, 299, 403, 587, 623, 711
ApeKI	GCWGC	1 cut(s)	476
ApoI	RAATTY	1 cut(s)	223
Asp718I	GGTACC	1 cut(s)	351
AspS9I	GGNCC	4 cut(s)	300, 419, 588, 712
AsuC2I	CCSGG	3 cut(s)	168, 303, 950
AsuHPI	GGTGA	2 cut(s)	260, 371
AvaI	CYCGRG	1 cut(s)	1023
AvaII	GGWCC	1 cut(s)	419
BaeI	ACNNNNGTAYC	2 cut(s)	343, 376
BalI	TGGCCA	1 cut(s)	215
BanI	GGYRCC	1 cut(s)	351
BanII	GRGCYC	1 cut(s)	622
BauI	CACGAG	1 cut(s)	450
BbsI	GAAGAC	1 cut(s)	785
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	4 cut(s)	418, 451, 723, 905
BceAI	ACGGC	1 cut(s)	525
BciT130I	CCWGG	2 cut(s)	104, 770
BclI	TGATCA	2 cut(s)	985, 991
BcnI	CCSGG	3 cut(s)	168, 303, 950
BcoDI	GTCTC	3 cut(s)	423, 748, 1026
BfaI	CTAG	2 cut(s)	608, 719
BglII	AGATCT	1 cut(s)	235
BisI	GCNGC	1 cut(s)	477
BlsI	GCNGC	1 cut(s)	478
BmcAI	AGTACT	1 cut(s)	686
Bme1390I	CCNGG	5 cut(s)	104, 168, 303, 770, 950
Bme18I	GGWCC	1 cut(s)	419
BmeT110I	CYCGRG	1 cut(s)	1023
BmgT120I	GGNCC	4 cut(s)	300, 419, 588, 712
BmiI	GGNNCC	4 cut(s)	353, 861, 871, 965
BmrFI	CCNGG	5 cut(s)	104, 168, 303, 770, 950
BmrI	ACTGGG	1 cut(s)	507
BmsI	GCATC	2 cut(s)	511, 543
BmuI	ACTGGG	1 cut(s)	507
BpiI	GAAGAC	1 cut(s)	785
Bpu10I	CCTNAGC	1 cut(s)	734
BpuEI	CTTGAG	3 cut(s)	78, 569, 806
BpuMI	CCSGG	3 cut(s)	168, 303, 950
BsaBI	GATNNNNATC	1 cut(s)	990
BsaI	GGTCTC	2 cut(s)	423, 748
BsaJI	CCNNGG	4 cut(s)	84, 355, 864, 949
BsaXI	ACNNNNNCTCC	4 cut(s)	915, 945, 955, 985
Bsc4I	CCNNNNNNNGG	2 cut(s)	412, 673
Bse1I	ACTGG	2 cut(s)	502, 678
Bse3DI	GCAATG	1 cut(s)	579
Bse8I	GATNNNNATC	1 cut(s)	990
BseBI	CCWGG	2 cut(s)	104, 770
BseDI	CCNNGG	4 cut(s)	84, 355, 864, 949
BseJI	GATNNNNATC	1 cut(s)	990
BseLI	CCNNNNNNNGG	2 cut(s)	412, 673
BseMI	GCAATG	1 cut(s)	579
BseMII	CTCAG	3 cut(s)	68, 474, 644
BseNI	ACTGG	2 cut(s)	502, 678
BseRI	GAGGAG	2 cut(s)	73, 939
BseXI	GCAGC	1 cut(s)	463
BseYI	CCCAGC	1 cut(s)	590
BsgI	GTGCAG	1 cut(s)	684
BshFI	GGCC	7 cut(s)	215, 232, 301, 405, 589, 625, 713
BshNI	GGYRCC	1 cut(s)	351
BsiHKCI	CYCGRG	1 cut(s)	1023
BsiSI	CCGG	3 cut(s)	168, 303, 949
BslFI	GGGAC	2 cut(s)	150, 991
BslI	CCNNNNNNNGG	2 cut(s)	412, 673
BsmAI	GTCTC	3 cut(s)	423, 748, 1026
BsmFI	GGGAC	2 cut(s)	150, 991
BsnI	GGCC	7 cut(s)	215, 232, 301, 405, 589, 625, 713
Bso31I	GGTCTC	2 cut(s)	423, 748
BsoBI	CYCGRG	1 cut(s)	1023
Bsp1286I	GDGCHC	1 cut(s)	622
Bsp143I	GATC	3 cut(s)	235, 985, 991
BspACI	CCGC	1 cut(s)	157
BspANI	GGCC	7 cut(s)	215, 232, 301, 405, 589, 625, 713
BspCNI	CTCAG	3 cut(s)	67, 475, 645
BspHI	TCATGA	1 cut(s)	988
BspLI	GGNNCC	4 cut(s)	353, 861, 871, 965
BspT107I	GGYRCC	1 cut(s)	351
BspTNI	GGTCTC	2 cut(s)	423, 748
BsrDI	GCAATG	1 cut(s)	579
BsrI	ACTGG	2 cut(s)	502, 678
BssECI	CCNNGG	4 cut(s)	84, 355, 864, 949
BssMI	GATC	3 cut(s)	235, 985, 991
BssNAI	GTATAC	1 cut(s)	271
BssSI	CACGAG	1 cut(s)	450
BssT1I	CCWWGG	2 cut(s)	355, 864
Bst1107I	GTATAC	1 cut(s)	271
Bst2BI	CACGAG	1 cut(s)	450
Bst2UI	CCWGG	2 cut(s)	104, 770
Bst4CI	ACNGT	2 cut(s)	295, 971
BstC8I	GCNNGC	1 cut(s)	587
BstDEI	CTNAG	5 cut(s)	54, 483, 653, 734, 888
BstENI	CCTNNNNNAGG	1 cut(s)	410
BstKTI	GATC	3 cut(s)	238, 988, 994
BstMAI	GTCTC	3 cut(s)	423, 748, 1026
BstMBI	GATC	3 cut(s)	235, 985, 991
BstMWI	GCNNNNNNNGC	2 cut(s)	591, 719
BstNI	CCWGG	2 cut(s)	104, 770
BstSCI	CCNGG	5 cut(s)	102, 166, 301, 768, 948
BstV1I	GCAGC	1 cut(s)	463
BstV2I	GAAGAC	1 cut(s)	785
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BstZ17I	GTATAC	1 cut(s)	271
BsuRI	GGCC	7 cut(s)	215, 232, 301, 405, 589, 625, 713
BtgZI	GCGATG	1 cut(s)	534
BtsIMutI	CAGTG	4 cut(s)	22, 291, 701, 976
Cac8I	GCNNGC	1 cut(s)	587
CciI	TCATGA	1 cut(s)	988
Cfr13I	GGNCC	4 cut(s)	300, 419, 588, 712
Csp6I	GTAC	2 cut(s)	352, 685
CspCI	CAANNNNNGTGG	2 cut(s)	304, 339
CviAII	CATG	4 cut(s)	440, 812, 884, 989
CviQI	GTAC	2 cut(s)	352, 685
DdeI	CTNAG	5 cut(s)	54, 483, 653, 734, 888
DpnI	GATC	3 cut(s)	237, 987, 993
DpnII	GATC	3 cut(s)	235, 985, 991
EaeI	YGGCCR	2 cut(s)	213, 623
EciI	GGCGGA	1 cut(s)	146
Eco130I	CCWWGG	2 cut(s)	355, 864
Eco24I	GRGCYC	1 cut(s)	622
Eco31I	GGTCTC	2 cut(s)	423, 748
Eco47I	GGWCC	1 cut(s)	419
Eco57I	CTGAAG	1 cut(s)	725
Eco88I	CYCGRG	1 cut(s)	1023
EcoNI	CCTNNNNNAGG	1 cut(s)	410
EcoRII	CCWGG	2 cut(s)	102, 768
EcoT14I	CCWWGG	2 cut(s)	355, 864
EcoT38I	GRGCYC	1 cut(s)	622
ErhI	CCWWGG	2 cut(s)	355, 864
FaeI	CATG	4 cut(s)	443, 815, 887, 992
FaqI	GGGAC	2 cut(s)	150, 991
FatI	CATG	4 cut(s)	439, 811, 883, 988
FbaI	TGATCA	2 cut(s)	985, 991
FblI	GTMKAC	2 cut(s)	270, 663
Fnu4HI	GCNGC	1 cut(s)	477
FriOI	GRGCYC	1 cut(s)	622
Fsp4HI	GCNGC	1 cut(s)	477
FspBI	CTAG	2 cut(s)	608, 719
GluI	GCNGC	1 cut(s)	477
GsaI	CCCAGC	1 cut(s)	594
HaeIII	GGCC	7 cut(s)	215, 232, 301, 405, 589, 625, 713
HapII	CCGG	3 cut(s)	168, 303, 949
Hin1II	CATG	4 cut(s)	443, 815, 887, 992
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	6 cut(s)	32, 80, 241, 279, 634, 790
HpaII	CCGG	3 cut(s)	168, 303, 949
HphI	GGTGA	2 cut(s)	260, 371
Hpy166II	GTNNAC	6 cut(s)	20, 51, 184, 271, 315, 664
Hpy188I	TCNGA	4 cut(s)	57, 240, 397, 654
Hpy188III	TCNNGA	6 cut(s)	197, 482, 631, 876, 989, 1025
Hpy8I	GTNNAC	6 cut(s)	20, 51, 184, 271, 315, 664
HpyAV	CCTTC	7 cut(s)	22, 245, 341, 410, 671, 700, 933
HpyCH4III	ACNGT	2 cut(s)	295, 971
HpyCH4IV	ACGT	1 cut(s)	311
HpyCH4V	TGCA	2 cut(s)	410, 701
HpyF10VI	GCNNNNNNNGC	2 cut(s)	591, 719
HpyF3I	CTNAG	5 cut(s)	54, 483, 653, 734, 888
HpySE526I	ACGT	1 cut(s)	311
Hsp92II	CATG	4 cut(s)	443, 815, 887, 992
KpnI	GGTACC	1 cut(s)	355
Ksp22I	TGATCA	2 cut(s)	985, 991
Kzo9I	GATC	3 cut(s)	235, 985, 991
LmnI	GCTCC	5 cut(s)	334, 484, 865, 942, 963
Lsp1109I	GCAGC	1 cut(s)	463
LweI	GCATC	2 cut(s)	511, 543
MaeI	CTAG	2 cut(s)	608, 719
MaeII	ACGT	1 cut(s)	311
MaeIII	GTNAC	2 cut(s)	133, 844
MalI	GATC	3 cut(s)	237, 987, 993
MboI	GATC	3 cut(s)	235, 985, 991
MboII	GAAGA	1 cut(s)	785
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	1 cut(s)	622
MlsI	TGGCCA	1 cut(s)	215
MluCI	AATT	2 cut(s)	223, 264
MluNI	TGGCCA	1 cut(s)	215
MlyI	GAGTC	3 cut(s)	74, 288, 799
Mox20I	TGGCCA	1 cut(s)	215
MscI	TGGCCA	1 cut(s)	215
MseI	TTAA	4 cut(s)	330, 339, 381, 693
MslI	CAYNNNNRTG	1 cut(s)	727
Msp20I	TGGCCA	1 cut(s)	215
MspI	CCGG	3 cut(s)	168, 303, 949
MspR9I	CCNGG	5 cut(s)	104, 168, 303, 770, 950
MvaI	CCWGG	2 cut(s)	104, 770
MwoI	GCNNNNNNNGC	2 cut(s)	591, 719
NciI	CCSGG	3 cut(s)	168, 303, 950
NdeII	GATC	3 cut(s)	235, 985, 991
NlaIII	CATG	4 cut(s)	443, 815, 887, 992
NlaIV	GGNNCC	4 cut(s)	353, 861, 871, 965
NmeAIII	GCCGAG	2 cut(s)	601, 620
PagI	TCATGA	1 cut(s)	988
PfeI	GAWTC	3 cut(s)	32, 241, 634
PfoI	TCCNGGA	1 cut(s)	166
PkrI	GCNGC	1 cut(s)	478
PleI	GAGTC	3 cut(s)	74, 287, 798
PpsI	GAGTC	3 cut(s)	74, 287, 798
Psp6I	CCWGG	2 cut(s)	102, 768
PspFI	CCCAGC	1 cut(s)	590
PspGI	CCWGG	2 cut(s)	102, 768
PspN4I	GGNNCC	4 cut(s)	353, 861, 871, 965
PspPI	GGNCC	4 cut(s)	300, 419, 588, 712
PsuI	RGATCY	1 cut(s)	235
RsaI	GTAC	2 cut(s)	353, 686
RsaNI	GTAC	2 cut(s)	352, 685
RseI	CAYNNNNRTG	1 cut(s)	727
SaqAI	TTAA	4 cut(s)	330, 339, 381, 693
SatI	GCNGC	1 cut(s)	477
Sau3AI	GATC	3 cut(s)	235, 985, 991
Sau96I	GGNCC	4 cut(s)	300, 419, 588, 712
ScaI	AGTACT	1 cut(s)	686
SchI	GAGTC	3 cut(s)	74, 288, 799
ScrFI	CCNGG	5 cut(s)	104, 168, 303, 770, 950
SduI	GDGCHC	1 cut(s)	622
SfaNI	GCATC	2 cut(s)	511, 543
SinI	GGWCC	1 cut(s)	419
SmiMI	CAYNNNNRTG	1 cut(s)	727
SmlI	CTYRAG	3 cut(s)	93, 548, 785
SmoI	CTYRAG	3 cut(s)	93, 548, 785
Sse9I	AATT	2 cut(s)	223, 264
SsiI	CCGC	1 cut(s)	157
SspMI	CTAG	2 cut(s)	608, 719
StyD4I	CCNGG	5 cut(s)	102, 166, 301, 768, 948
StyI	CCWWGG	2 cut(s)	355, 864
TaaI	ACNGT	2 cut(s)	295, 971
TaiI	ACGT	1 cut(s)	314
TaqI	TCGA	2 cut(s)	514, 670
TaqII	GACCGA	1 cut(s)	436
TasI	AATT	2 cut(s)	223, 264
TatI	WGTACW	1 cut(s)	684
TfiI	GAWTC	3 cut(s)	32, 241, 634
Tru1I	TTAA	4 cut(s)	330, 339, 381, 693
Tru9I	TTAA	4 cut(s)	330, 339, 381, 693
TscAI	CASTG	4 cut(s)	22, 298, 708, 976
TseI	GCWGC	1 cut(s)	476
TspDTI	ATGAA	1 cut(s)	972
TspGWI	ACGGA	1 cut(s)	483
TspRI	CASTG	4 cut(s)	22, 298, 708, 976
VpaK11BI	GGWCC	1 cut(s)	419
XagI	CCTNNNNNAGG	1 cut(s)	410
XapI	RAATTY	1 cut(s)	223
XmiI	GTMKAC	2 cut(s)	270, 663
XspI	CTAG	2 cut(s)	608, 719
ZrmI	AGTACT	1 cut(s)	686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.