Rh4BG075000

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
N/A
Physical Location & Seq
Forward (+)
13252062 .. 13252352
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG075000.1

Sequence Viewer

Length: 291 bp
ATGGATGTGCTGAGAAATAGTCATGATATTGACAGGATAGAAGTGTATGGGTTTGGTGGTGTGGGAAAGACTACACTTGTCAAAGAAGTTTCCTGGCAAGCTACTGGAGACAAAGAATTATTTGACGATGTGGTTATGATATTGGATGTAAAACAAAATCCAAGCATCCAAAGAATTCAAAAAGAAATTGCTAAGAAGTTAGGTCTTGACATTCCTGAAAATGAGACTATTGCTGGAAGTGCACGTCGTCAGCCGGATAAAAGACCAAAAGACTCTTGTAATATTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

96

Amino Acids

10.84

Weight (kDa)

6.57

Isoelectric Point (pI)

46.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 3 - 70 4e-10 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 174
AgsI TTSAA 1 cut(s) 179
AjiI CACGTC 1 cut(s) 245
AjnI CCWGG 1 cut(s) 92
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
Alw21I GWGCWC 1 cut(s) 244
Alw26I GTCTC 2 cut(s) 102, 218
Alw44I GTGCAC 1 cut(s) 240
ApaLI GTGCAC 1 cut(s) 240
ApoI RAATTY 1 cut(s) 174
BaeGI GKGCMC 1 cut(s) 244
Bbv12I GWGCWC 1 cut(s) 244
BciT130I CCWGG 1 cut(s) 94
BcoDI GTCTC 2 cut(s) 102, 218
Bme1390I CCNGG 1 cut(s) 94
BmgBI CACGTC 1 cut(s) 245
BmrFI CCNGG 1 cut(s) 94
BmsI GCATC 1 cut(s) 174
BpmI CTGGAG 1 cut(s) 126
Bse1I ACTGG 1 cut(s) 109
BseBI CCWGG 1 cut(s) 94
BseGI GGATG 3 cut(s) 10, 151, 165
BseNI ACTGG 1 cut(s) 109
BseSI GKGCMC 1 cut(s) 244
BsiHKAI GWGCWC 1 cut(s) 244
BsiSI CCGG 1 cut(s) 254
BsmAI GTCTC 2 cut(s) 102, 218
Bsp1286I GDGCHC 1 cut(s) 244
BspHI TCATGA 1 cut(s) 22
BsrI ACTGG 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 94
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 2 cut(s) 11, 192
BstF5I GGATG 3 cut(s) 10, 151, 165
BstMAI GTCTC 2 cut(s) 102, 218
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNI CCWGG 1 cut(s) 94
BstSCI CCNGG 1 cut(s) 92
BstSLI GKGCMC 1 cut(s) 244
BtrI CACGTC 1 cut(s) 245
BtsCI GGATG 3 cut(s) 10, 151, 165
Cac8I GCNNGC 1 cut(s) 99
CciI TCATGA 1 cut(s) 22
CviAII CATG 1 cut(s) 23
CviJI RGCY 2 cut(s) 101, 253
CviKI_1 RGCY 2 cut(s) 101, 253
DdeI CTNAG 2 cut(s) 11, 192
EcoRI GAATTC 1 cut(s) 174
EcoRII CCWGG 1 cut(s) 92
FaeI CATG 1 cut(s) 26
FaiI YATR 3 cut(s) 24, 48, 137
FatI CATG 1 cut(s) 22
FokI GGATG 3 cut(s) 17, 152, 158
GsuI CTGGAG 1 cut(s) 126
HapII CCGG 1 cut(s) 254
Hin1II CATG 1 cut(s) 26
HinfI GANTC 1 cut(s) 272
HpaII CCGG 1 cut(s) 254
Hpy166II GTNNAC 1 cut(s) 242
Hpy188III TCNNGA 3 cut(s) 23, 206, 215
Hpy8I GTNNAC 1 cut(s) 242
Hpy99I CGWCG 1 cut(s) 249
HpyCH4IV ACGT 1 cut(s) 244
HpyCH4V TGCA 1 cut(s) 242
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 2 cut(s) 11, 192
HpySE526I ACGT 1 cut(s) 244
Hsp92II CATG 1 cut(s) 26
LpnPI CCDG 7 cut(s) 19, 79, 90, 106, 219, 228, 267
LweI GCATC 1 cut(s) 174
MaeII ACGT 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 244
MluCI AATT 3 cut(s) 116, 174, 186
MlyI GAGTC 1 cut(s) 266
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 94
MvaI CCWGG 1 cut(s) 94
MwoI GCNNNNNNNGC 1 cut(s) 239
NlaIII CATG 1 cut(s) 26
PagI TCATGA 1 cut(s) 22
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
Psp6I CCWGG 1 cut(s) 92
PspGI CCWGG 1 cut(s) 92
SchI GAGTC 1 cut(s) 266
ScrFI CCNGG 1 cut(s) 94
SduI GDGCHC 1 cut(s) 244
SetI ASST 3 cut(s) 103, 205, 247
SfaNI GCATC 1 cut(s) 174
Sse9I AATT 3 cut(s) 116, 174, 186
SspI AATATT 1 cut(s) 283
StyD4I CCNGG 1 cut(s) 92
TaiI ACGT 1 cut(s) 247
TasI AATT 3 cut(s) 116, 174, 186
VneI GTGCAC 1 cut(s) 240
XapI RAATTY 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.