Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

20926364 .. 20936403

Gene Structure 10040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG124800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGCGGAGATGACGGCGTCGACCATTATGTCGAAGAGATTCCGGTTGCTGCAGAACAACAATATATCAGGTAAACTCCCAGCGGAGCTCGGTACTCTTCCCAAGCTTCAAACTCTAGATCTCTCCAATAATCGGTTCTCGGGTGTCGTCCCAGACTCTCTGGGTCAGTTGAGTAGTCTGCAATACCTGAGGCTGAACAACAATAGCTTGTCTGGGGTCTTCCCTGTGTCTTTAGCCAAAATCCCTGCGCTTGCTTTGTTGGATTTGTCTTATAACAATCTTAGTGGACCAATACCCAAATTCCCAGCCAGAACTTTCAATGTTGTCGGAAACCCACTGATTTGTGGAAGCAGCTCCACAGAAGGATGCTCTGGATCAGCCCCTGTCCCTCTTTCGTTATCACTAAAACCATCACCTGGAAAAAACAAGTCCAAGATCGTAGCAATTGCACTTGGGGTGAGCTTGAGTTGTGCCTTTCTCATGCTCCTATCACTTGGAATCCTCTGGTACAGAAAGAAGCAGAAGAGCCAAACCATTCTGAACATCAGTGACATTCAAGAAGAGGGACTTGTGAGCTTAGGCAACCTCAGAAACTTCACTTTCAAAGAGCTTCAAGTTGCCACGGACCATTTTAGCTCCAAGAACATACTGGGTGCTGGAGGTTTTGGGAATGTGTACAAGGGAAAGCTAGGGAATGGGACTATGGTGGCAGTGAAACGACTCAAGGATGTAACAGGAACAGCTGGAGAGTCACAATTTAGGACAGAATTAGAGATGATAAGTCTAGCAGTGCACCGGAATTTGCTTCGGTTAATTGGATATTGTGCTACTTCTAATGAGAGGCTTCTGGTGTACCCGTACATGTCCAATGGCAGTGTCGCCTTCAGGCTTAGAGGTTTGTCCATATTTACTGCAAATACACTCACATTGCATCTTTCAGTAGGTGTGGCAAATGAGTGTTTCCTGTCTACTGTTATTGAGGTGATATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004713 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009987 GO:0010150 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018108 GO:0018193 GO:0018212 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

330

Amino Acids

35.54

Weight (kDa)

9.71

Isoelectric Point (pI)

40.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	17 - 88	4.1e-07	Leucine-rich repeat region
LRR_8	PF13855	34 - 94	2e-13	Leucine rich repeat
Pkinase	PF00069	212 - 305	9.4e-12	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	214 - 300	9.3e-14	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	273
AasI	GACNNNNNNGTC	1 cut(s)	28
AccB7I	CCANNNNNTGG	1 cut(s)	416
AccI	GTMKAC	2 cut(s)	20, 968
AciI	CCGC	2 cut(s)	5, 83
AclWI	GGATC	1 cut(s)	382
AcsI	RAATTY	2 cut(s)	299, 799
AcuI	CTGAAG	1 cut(s)	868
AcyI	GRCGYC	1 cut(s)	17
AfaI	GTAC	5 cut(s)	94, 509, 677, 854, 860
AfiI	CCNNNNNNNGG	2 cut(s)	132, 416
AflIII	ACRYGT	1 cut(s)	861
AgsI	TTSAA	5 cut(s)	110, 319, 557, 604, 614
AjnI	CCWGG	1 cut(s)	415
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
Alw21I	GWGCWC	2 cut(s)	90, 795
Alw44I	GTGCAC	1 cut(s)	791
AlwI	GGATC	1 cut(s)	382
AlwNI	CAGNNNCTG	1 cut(s)	383
Ama87I	CYCGRG	1 cut(s)	139
ApaLI	GTGCAC	1 cut(s)	791
ApeKI	GCWGC	2 cut(s)	49, 351
ApoI	RAATTY	2 cut(s)	299, 799
Asp700I	GAANNNNTTC	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	250
AspS9I	GGNCC	2 cut(s)	287, 625
AsuHPI	GGTGA	2 cut(s)	405, 469
AvaI	CYCGRG	1 cut(s)	139
AvaII	GGWCC	2 cut(s)	287, 625
AxyI	CCTNAGG	1 cut(s)	188
BaeGI	GKGCMC	1 cut(s)	795
BanII	GRGCYC	1 cut(s)	90
BbsI	GAAGAC	1 cut(s)	211
Bbv12I	GWGCWC	2 cut(s)	90, 795
BbvI	GCAGC	2 cut(s)	36, 363
BccI	CCATC	1 cut(s)	418
BceAI	ACGGC	1 cut(s)	30
BciT130I	CCWGG	1 cut(s)	417
BfaI	CTAG	3 cut(s)	116, 689, 785
BfmI	CTRYAG	1 cut(s)	50
BglII	AGATCT	1 cut(s)	118
BisI	GCNGC	2 cut(s)	50, 352
BlsI	GCNGC	2 cut(s)	51, 353
Bme1390I	CCNGG	1 cut(s)	417
Bme18I	GGWCC	2 cut(s)	287, 625
BmeT110I	CYCGRG	1 cut(s)	139
BmgT120I	GGNCC	2 cut(s)	287, 625
BmrFI	CCNGG	1 cut(s)	417
BmrI	ACTGGG	1 cut(s)	659
BmsI	GCATC	2 cut(s)	356, 940
BmuI	ACTGGG	1 cut(s)	659
BpiI	GAAGAC	1 cut(s)	211
BpmI	CTGGAG	2 cut(s)	678, 765
Bpu10I	CCTNAGC	1 cut(s)	577
BpuEI	CTTGAG	2 cut(s)	484, 707
BsaHI	GRCGYC	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	621
BsaWI	WCCGGW	2 cut(s)	42, 795
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 416
Bse1I	ACTGG	1 cut(s)	654
Bse21I	CCTNAGG	1 cut(s)	188
Bse3DI	GCAATG	1 cut(s)	926
BseBI	CCWGG	1 cut(s)	417
BseDI	CCNNGG	1 cut(s)	621
BseGI	GGATG	2 cut(s)	371, 733
BseLI	CCNNNNNNNGG	2 cut(s)	132, 416
BseMI	GCAATG	1 cut(s)	926
BseMII	CTCAG	2 cut(s)	179, 601
BseNI	ACTGG	1 cut(s)	654
BseSI	GKGCMC	1 cut(s)	795
BseXI	GCAGC	2 cut(s)	36, 363
BseYI	CCCAGC	2 cut(s)	79, 304
BsiHKAI	GWGCWC	2 cut(s)	90, 795
BsiHKCI	CYCGRG	1 cut(s)	139
BsiSI	CCGG	2 cut(s)	43, 796
BslFI	GGGAC	4 cut(s)	134, 371, 579, 712
BslI	CCNNNNNNNGG	2 cut(s)	132, 416
BsmFI	GGGAC	4 cut(s)	134, 371, 579, 712
BsoBI	CYCGRG	1 cut(s)	139
Bsp1286I	GDGCHC	2 cut(s)	90, 795
Bsp1407I	TGTACA	1 cut(s)	675
Bsp143I	GATC	3 cut(s)	118, 374, 435
BspACI	CCGC	2 cut(s)	5, 83
BspCNI	CTCAG	2 cut(s)	180, 600
BspMAI	CTGCAG	1 cut(s)	54
BspPI	GGATC	1 cut(s)	382
BspQI	GCTCTTC	1 cut(s)	518
BsrDI	GCAATG	1 cut(s)	926
BsrGI	TGTACA	1 cut(s)	675
BsrI	ACTGG	1 cut(s)	654
BssECI	CCNNGG	1 cut(s)	621
BssMI	GATC	3 cut(s)	118, 374, 435
BssNI	GRCGYC	1 cut(s)	17
Bst2UI	CCWGG	1 cut(s)	417
Bst4CI	ACNGT	1 cut(s)	973
Bst6I	CTCTTC	4 cut(s)	29, 102, 518, 555
BstACI	GRCGYC	1 cut(s)	17
BstAUI	TGTACA	1 cut(s)	675
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	5 cut(s)	188, 281, 577, 587, 890
BstDSI	CCRYGG	1 cut(s)	621
BstF5I	GGATG	2 cut(s)	371, 733
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	3 cut(s)	121, 377, 438
BstMBI	GATC	3 cut(s)	118, 374, 435
BstNI	CCWGG	1 cut(s)	417
BstNSI	RCATGY	1 cut(s)	865
BstSCI	CCNGG	1 cut(s)	415
BstSFI	CTRYAG	1 cut(s)	50
BstSLI	GKGCMC	1 cut(s)	795
BstV1I	GCAGC	2 cut(s)	36, 363
BstV2I	GAAGAC	1 cut(s)	211
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
Bsu36I	CCTNAGG	1 cut(s)	188
BtgI	CCRYGG	1 cut(s)	621
BtsCI	GGATG	2 cut(s)	371, 733
BtsI	GCAGTG	3 cut(s)	717, 795, 880
BtsIMutI	CAGTG	5 cut(s)	335, 553, 717, 795, 880
Cac8I	GCNNGC	1 cut(s)	252
CaiI	CAGNNNCTG	1 cut(s)	383
CfoI	GCGC	1 cut(s)	250
Cfr13I	GGNCC	2 cut(s)	287, 625
CseI	GACGC	1 cut(s)	6
Csp6I	GTAC	5 cut(s)	93, 508, 676, 853, 859
CspCI	CAANNNNNGTGG	2 cut(s)	265, 300
CviAII	CATG	2 cut(s)	481, 862
CviQI	GTAC	5 cut(s)	93, 508, 676, 853, 859
DdeI	CTNAG	5 cut(s)	188, 281, 577, 587, 890
DpnI	GATC	3 cut(s)	120, 376, 437
DpnII	GATC	3 cut(s)	118, 374, 435
DrdI	GACNNNNNNGTC	1 cut(s)	28
DseDI	GACNNNNNNGTC	1 cut(s)	28
Eam1104I	CTCTTC	4 cut(s)	29, 102, 518, 555
EarI	CTCTTC	4 cut(s)	29, 102, 518, 555
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	90
Eco47I	GGWCC	2 cut(s)	287, 625
Eco53kI	GAGCTC	1 cut(s)	88
Eco57I	CTGAAG	1 cut(s)	868
Eco81I	CCTNAGG	1 cut(s)	188
Eco88I	CYCGRG	1 cut(s)	139
EcoICRI	GAGCTC	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	415
EcoT38I	GRGCYC	1 cut(s)	90
FaeI	CATG	2 cut(s)	484, 865
FaiI	YATR	9 cut(s)	29, 65, 273, 482, 647, 704, 863, 905, 988
FalI	AAGNNNNNCTT	2 cut(s)	552, 584
FaqI	GGGAC	4 cut(s)	134, 371, 579, 712
FatI	CATG	2 cut(s)	480, 861
FblI	GTMKAC	2 cut(s)	20, 968
Fnu4HI	GCNGC	2 cut(s)	50, 352
FokI	GGATG	2 cut(s)	378, 740
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	2 cut(s)	50, 352
FspBI	CTAG	3 cut(s)	116, 689, 785
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	2 cut(s)	50, 352
GsaI	CCCAGC	2 cut(s)	83, 308
GsuI	CTGGAG	2 cut(s)	678, 765
HapII	CCGG	2 cut(s)	43, 796
HgaI	GACGC	1 cut(s)	6
HhaI	GCGC	1 cut(s)	250
Hin1I	GRCGYC	1 cut(s)	17
Hin1II	CATG	2 cut(s)	484, 865
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	5 cut(s)	39, 155, 498, 720, 749
HpaII	CCGG	2 cut(s)	43, 796
HphI	GGTGA	2 cut(s)	405, 469
Hpy166II	GTNNAC	7 cut(s)	21, 74, 287, 676, 793, 853, 969
Hpy188I	TCNGA	3 cut(s)	329, 540, 590
Hpy188III	TCNNGA	3 cut(s)	116, 372, 557
Hpy8I	GTNNAC	7 cut(s)	21, 74, 287, 676, 793, 853, 969
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	2 cut(s)	356, 892
HpyCH4III	ACNGT	1 cut(s)	973
HpyCH4V	TGCA	6 cut(s)	52, 181, 449, 793, 914, 931
HpyF3I	CTNAG	5 cut(s)	188, 281, 577, 587, 890
Hsp92I	GRCGYC	1 cut(s)	17
Hsp92II	CATG	2 cut(s)	484, 865
HspAI	GCGC	1 cut(s)	248
Kzo9I	GATC	3 cut(s)	118, 374, 435
LguI	GCTCTTC	1 cut(s)	518
LmnI	GCTCC	4 cut(s)	85, 359, 489, 641
Lsp1109I	GCAGC	2 cut(s)	36, 363
LweI	GCATC	2 cut(s)	356, 940
MaeI	CTAG	3 cut(s)	116, 689, 785
MaeIII	GTNAC	3 cut(s)	548, 730, 750
MalI	GATC	3 cut(s)	120, 376, 437
MboI	GATC	3 cut(s)	118, 374, 435
MboII	GAAGA	5 cut(s)	46, 89, 211, 535, 572
MfeI	CAATTG	1 cut(s)	444
MflI	RGATCY	1 cut(s)	118
MhlI	GDGCHC	2 cut(s)	90, 795
MluCI	AATT	6 cut(s)	299, 444, 755, 767, 799, 813
MlyI	GAGTC	3 cut(s)	149, 714, 758
MmeI	TCCRAC	2 cut(s)	240, 307
MnlI	CCTC	9 cut(s)	183, 399, 512, 556, 596, 653, 834, 887, 973
MroXI	GAANNNNTTC	1 cut(s)	38
MseI	TTAA	1 cut(s)	812
MspA1I	CMGCKG	2 cut(s)	83, 743
MspI	CCGG	2 cut(s)	43, 796
MspR9I	CCNGG	1 cut(s)	417
MunI	CAATTG	1 cut(s)	444
MvaI	CCWGG	1 cut(s)	417
NdeII	GATC	3 cut(s)	118, 374, 435
NlaIII	CATG	2 cut(s)	484, 865
NmuCI	GTSAC	2 cut(s)	548, 750
NspI	RCATGY	1 cut(s)	865
PciI	ACATGT	1 cut(s)	861
PciSI	GCTCTTC	1 cut(s)	518
PdmI	GAANNNNTTC	1 cut(s)	38
PfeI	GAWTC	2 cut(s)	39, 498
PflFI	GACNNNGTC	1 cut(s)	16
PflMI	CCANNNNNTGG	1 cut(s)	416
PkrI	GCNGC	2 cut(s)	51, 353
PleI	GAGTC	3 cut(s)	149, 714, 757
PpsI	GAGTC	3 cut(s)	149, 714, 757
PscI	ACATGT	1 cut(s)	861
PsiI	TTATAA	1 cut(s)	273
Psp124BI	GAGCTC	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	415
PspFI	CCCAGC	2 cut(s)	79, 304
PspGI	CCWGG	1 cut(s)	415
PspPI	GGNCC	2 cut(s)	287, 625
PstI	CTGCAG	1 cut(s)	54
PstNI	CAGNNNCTG	1 cut(s)	383
PsuI	RGATCY	1 cut(s)	118
PsyI	GACNNNGTC	1 cut(s)	16
PvuII	CAGCTG	1 cut(s)	743
RsaI	GTAC	5 cut(s)	94, 509, 677, 854, 860
RsaNI	GTAC	5 cut(s)	93, 508, 676, 853, 859
SacI	GAGCTC	1 cut(s)	90
SalI	GTCGAC	1 cut(s)	19
SapI	GCTCTTC	1 cut(s)	518
SaqAI	TTAA	1 cut(s)	812
SatI	GCNGC	2 cut(s)	50, 352
Sau3AI	GATC	3 cut(s)	118, 374, 435
Sau96I	GGNCC	2 cut(s)	287, 625
SchI	GAGTC	3 cut(s)	149, 714, 758
ScrFI	CCNGG	1 cut(s)	417
SduI	GDGCHC	2 cut(s)	90, 795
SfaNI	GCATC	2 cut(s)	356, 940
SfcI	CTRYAG	1 cut(s)	50
SinI	GGWCC	2 cut(s)	287, 625
SmlI	CTYRAG	2 cut(s)	463, 722
SmoI	CTYRAG	2 cut(s)	463, 722
Sse9I	AATT	6 cut(s)	299, 444, 755, 767, 799, 813
SsiI	CCGC	2 cut(s)	5, 83
SspMI	CTAG	3 cut(s)	116, 689, 785
SstI	GAGCTC	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	415
TaaI	ACNGT	1 cut(s)	973
TaqI	TCGA	2 cut(s)	20, 32
TasI	AATT	6 cut(s)	299, 444, 755, 767, 799, 813
TatI	WGTACW	1 cut(s)	675
TfiI	GAWTC	2 cut(s)	39, 498
Tru1I	TTAA	1 cut(s)	812
Tru9I	TTAA	1 cut(s)	812
TscAI	CASTG	5 cut(s)	342, 553, 717, 795, 880
TseFI	GTSAC	2 cut(s)	548, 750
TseI	GCWGC	2 cut(s)	49, 351
Tsp45I	GTSAC	2 cut(s)	548, 750
TspGWI	ACGGA	1 cut(s)	638
TspRI	CASTG	5 cut(s)	342, 553, 717, 795, 880
Tth111I	GACNNNGTC	1 cut(s)	16
Van91I	CCANNNNNTGG	1 cut(s)	416
VneI	GTGCAC	1 cut(s)	791
VpaK11BI	GGWCC	2 cut(s)	287, 625
XapI	RAATTY	2 cut(s)	299, 799
XbaI	TCTAGA	1 cut(s)	115
XceI	RCATGY	1 cut(s)	865
XcmI	CCANNNNNNNNNTGG	1 cut(s)	646
XmiI	GTMKAC	2 cut(s)	20, 968
XmnI	GAANNNNTTC	1 cut(s)	38
XspI	CTAG	3 cut(s)	116, 689, 785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.