Rh4BG147600
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
N/A
Physical Location & Seq
Forward (+)
26302238 .. 26302951
714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG147600.1

Sequence Viewer

Length: 714 bp
ATGACTCTTCTAGTTCAGCTGCGCCGGAATGTTGGAAGTGGCACCTGGAAGGGCGACGACTCCGGCAAGCCAGTACGATCTGTTGAAACTGGTCGTGTTGTTGGCTTGAAGAAAAGATTTACTTACAAGAACGATGACTCGGTTCACAACGGCTGTTGGATCTTGTATGAGTTCTACCTTGATCAATCACTCAGAGACAATAAACAAAAGCTGGAAGACTATGTTCTTTGTCTACTACGAAAGAATGGTGAACCCAAAACCAAGATCGAAAAGAAGAGAAAGCAACGTGAAGAGAAAGAGGTTCTTGAAAACAATTATGCCTTTGATGATGGAGAAAACTCGAAAAGGGAGCAAGAAGAGTTGCTTGAGCCACAAGCGAAGTGGCAACGAACGGTGCCATCCATTGGTAATGCACCACTAACAATGCCATCAGAAGATGATGCTGCATTCGCAGCTGAACTAGAAGAGTCATTGGAATGCTTTGAAGATGATAATGCACCCTCAGAAGCTCGAGCAATTGGCTTTCAAGGTGGGGAGAATGGTGGACTCCAACAATTAGCAGCCGAGGTGCAATCAGGCCCTTCGTTTGTAGACGATCATGGAATATTTAATCCGCTGCCGGAGGAAGACTTTCTCTTGACGGAAATGTTAGAAGAAATGGGTATGGTGGACATGGAAGAACTAGTTTTTATTAATATAGATGTGGCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

237

Amino Acids

26.84

Weight (kDa)

4.53

Isoelectric Point (pI)

63.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 41, 394
AccB7I CCANNNNNTGG 1 cut(s) 404
AccI GTMKAC 2 cut(s) 232, 591
AciI CCGC 1 cut(s) 614
AclWI GGATC 1 cut(s) 167
AfaI GTAC 1 cut(s) 75
AfiI CCNNNNNNNGG 1 cut(s) 404
AgsI TTSAA 5 cut(s) 86, 109, 308, 485, 527
AhlI ACTAGT 1 cut(s) 682
AjnI CCWGG 1 cut(s) 44
AluBI AGCT 5 cut(s) 19, 211, 455, 509, 710
AluI AGCT 5 cut(s) 19, 211, 455, 509, 710
Alw26I GTCTC 1 cut(s) 189
AlwI GGATC 1 cut(s) 167
Ama87I CYCGRG 1 cut(s) 510
AoxI GGCC 1 cut(s) 577
ApeKI GCWGC 6 cut(s) 19, 443, 452, 560, 616, 707
AseI ATTAAT 1 cut(s) 693
Asp700I GAANNNNTTC 1 cut(s) 630
AspLEI GCGC 1 cut(s) 24
AspS9I GGNCC 1 cut(s) 578
AsuHPI GGTGA 1 cut(s) 260
AvaI CYCGRG 1 cut(s) 510
BanI GGYRCC 2 cut(s) 41, 394
BbsI GAAGAC 2 cut(s) 222, 633
BbvI GCAGC 5 cut(s) 6, 430, 464, 572, 603
BccI CCATC 3 cut(s) 323, 406, 436
BceAI ACGGC 1 cut(s) 166
BciT130I CCWGG 1 cut(s) 46
BclI TGATCA 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 189
BcuI ACTAGT 1 cut(s) 682
BfaI CTAG 3 cut(s) 11, 461, 683
BisI GCNGC 6 cut(s) 20, 444, 453, 561, 617, 708
BlsI GCNGC 6 cut(s) 21, 445, 454, 562, 618, 709
Bme1390I CCNGG 1 cut(s) 46
BmeT110I CYCGRG 1 cut(s) 510
BmgT120I GGNCC 1 cut(s) 578
BmiI GGNNCC 2 cut(s) 43, 396
BmrFI CCNGG 1 cut(s) 46
BmsI GCATC 1 cut(s) 430
BpiI GAAGAC 2 cut(s) 222, 633
BpuEI CTTGAG 1 cut(s) 386
BsaJI CCNNGG 1 cut(s) 564
Bsc4I CCNNNNNNNGG 1 cut(s) 404
Bse1I ACTGG 2 cut(s) 71, 94
BseBI CCWGG 1 cut(s) 46
BseDI CCNNGG 1 cut(s) 564
BseGI GGATG 1 cut(s) 398
BseLI CCNNNNNNNGG 1 cut(s) 404
BseMII CTCAG 2 cut(s) 205, 516
BseNI ACTGG 2 cut(s) 71, 94
BseXI GCAGC 5 cut(s) 6, 430, 464, 572, 603
BshFI GGCC 1 cut(s) 579
BshNI GGYRCC 2 cut(s) 41, 394
BsiHKCI CYCGRG 1 cut(s) 510
BsiSI CCGG 3 cut(s) 25, 63, 620
BslI CCNNNNNNNGG 1 cut(s) 404
BsmAI GTCTC 1 cut(s) 189
BsmI GAATGC 2 cut(s) 446, 482
BsnI GGCC 1 cut(s) 579
BsoBI CYCGRG 1 cut(s) 510
Bsp143I GATC 5 cut(s) 77, 159, 181, 264, 595
BspACI CCGC 1 cut(s) 614
BspANI GGCC 1 cut(s) 579
BspCNI CTCAG 2 cut(s) 204, 515
BspLI GGNNCC 2 cut(s) 43, 396
BspPI GGATC 1 cut(s) 167
BspT107I GGYRCC 2 cut(s) 41, 394
BsrI ACTGG 2 cut(s) 71, 94
BssECI CCNNGG 1 cut(s) 564
BssMI GATC 5 cut(s) 77, 159, 181, 264, 595
Bst2UI CCWGG 1 cut(s) 46
Bst4CI ACNGT 1 cut(s) 394
Bst6I CTCTTC 5 cut(s) 12, 269, 285, 351, 459
BstC8I GCNNGC 1 cut(s) 68
BstDEI CTNAG 2 cut(s) 191, 502
BstF5I GGATG 1 cut(s) 398
BstHHI GCGC 1 cut(s) 24
BstKTI GATC 5 cut(s) 80, 162, 184, 267, 598
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 5 cut(s) 77, 159, 181, 264, 595
BstMWI GCNNNNNNNGC 2 cut(s) 449, 452
BstNI CCWGG 1 cut(s) 46
BstSCI CCNGG 1 cut(s) 44
BstV1I GCAGC 5 cut(s) 6, 430, 464, 572, 603
BstV2I GAAGAC 2 cut(s) 222, 633
BstX2I RGATCY 1 cut(s) 159
BstYI RGATCY 1 cut(s) 159
BsuRI GGCC 1 cut(s) 579
BtsCI GGATG 1 cut(s) 398
Cac8I GCNNGC 1 cut(s) 68
CfoI GCGC 1 cut(s) 24
Cfr13I GGNCC 1 cut(s) 578
Csp6I GTAC 1 cut(s) 74
CspCI CAANNNNNGTGG 2 cut(s) 362, 397
CviAII CATG 2 cut(s) 599, 673
CviQI GTAC 1 cut(s) 74
DdeI CTNAG 2 cut(s) 191, 502
DpnI GATC 5 cut(s) 79, 161, 183, 266, 597
DpnII GATC 5 cut(s) 77, 159, 181, 264, 595
Eam1104I CTCTTC 5 cut(s) 12, 269, 285, 351, 459
EarI CTCTTC 5 cut(s) 12, 269, 285, 351, 459
Eco88I CYCGRG 1 cut(s) 510
EcoO109I RGGNCCY 1 cut(s) 578
EcoRII CCWGG 1 cut(s) 44
FaeI CATG 2 cut(s) 602, 676
FaiI YATR 7 cut(s) 168, 222, 318, 600, 665, 674, 698
FalI AAGNNNNNCTT 6 cut(s) 106, 138, 288, 320, 348, 380
FatI CATG 2 cut(s) 598, 672
FbaI TGATCA 1 cut(s) 181
FblI GTMKAC 2 cut(s) 232, 591
Fnu4HI GCNGC 6 cut(s) 20, 444, 453, 561, 617, 708
FokI GGATG 1 cut(s) 385
Fsp4HI GCNGC 6 cut(s) 20, 444, 453, 561, 617, 708
FspBI CTAG 3 cut(s) 11, 461, 683
GlaI GCGC 1 cut(s) 23
GluI GCNGC 6 cut(s) 20, 444, 453, 561, 617, 708
HaeIII GGCC 1 cut(s) 579
HapII CCGG 3 cut(s) 25, 63, 620
HhaI GCGC 1 cut(s) 24
Hin1II CATG 2 cut(s) 602, 676
Hin6I GCGC 1 cut(s) 22
HinP1I GCGC 1 cut(s) 22
HinfI GANTC 5 cut(s) 4, 59, 137, 467, 546
HpaII CCGG 3 cut(s) 25, 63, 620
HphI GGTGA 1 cut(s) 260
Hpy166II GTNNAC 6 cut(s) 145, 233, 251, 545, 592, 670
Hpy188I TCNGA 3 cut(s) 194, 433, 505
Hpy188III TCNNGA 2 cut(s) 305, 637
Hpy8I GTNNAC 6 cut(s) 145, 233, 251, 545, 592, 670
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 2 cut(s) 43, 591
HpyCH4III ACNGT 1 cut(s) 394
HpyCH4IV ACGT 1 cut(s) 286
HpyCH4V TGCA 4 cut(s) 413, 446, 497, 571
HpyF10VI GCNNNNNNNGC 2 cut(s) 449, 452
HpyF3I CTNAG 2 cut(s) 191, 502
HpySE526I ACGT 1 cut(s) 286
Hsp92II CATG 2 cut(s) 602, 676
HspAI GCGC 1 cut(s) 22
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 5 cut(s) 77, 159, 181, 264, 595
LmnI GCTCC 1 cut(s) 349
LpnPI CCDG 9 cut(s) 31, 38, 58, 75, 76, 84, 197, 561, 633
Lsp1109I GCAGC 5 cut(s) 6, 430, 464, 572, 603
LweI GCATC 1 cut(s) 430
MaeI CTAG 3 cut(s) 11, 461, 683
MaeII ACGT 1 cut(s) 286
MalI GATC 5 cut(s) 79, 161, 183, 266, 597
MboI GATC 5 cut(s) 77, 159, 181, 264, 595
MfeI CAATTG 1 cut(s) 516
MflI RGATCY 1 cut(s) 159
MluCI AATT 3 cut(s) 313, 516, 554
MlyI GAGTC 4 cut(s) 53, 131, 476, 540
MmeI TCCRAC 3 cut(s) 13, 137, 574
MnlI CCTC 4 cut(s) 292, 511, 559, 616
MroXI GAANNNNTTC 1 cut(s) 630
MseI TTAA 3 cut(s) 609, 693, 712
MslI CAYNNNNRTG 1 cut(s) 475
MspA1I CMGCKG 3 cut(s) 19, 455, 616
MspI CCGG 3 cut(s) 25, 63, 620
MspR9I CCNGG 1 cut(s) 46
MunI CAATTG 1 cut(s) 516
Mva1269I GAATGC 2 cut(s) 446, 482
MvaI CCWGG 1 cut(s) 46
MwoI GCNNNNNNNGC 2 cut(s) 449, 452
NdeII GATC 5 cut(s) 77, 159, 181, 264, 595
NlaIII CATG 2 cut(s) 602, 676
NlaIV GGNNCC 2 cut(s) 43, 396
NmeAIII GCCGAG 1 cut(s) 589
PaeR7I CTCGAG 1 cut(s) 510
PctI GAATGC 2 cut(s) 446, 482
PdmI GAANNNNTTC 1 cut(s) 630
PflMI CCANNNNNTGG 1 cut(s) 404
PkrI GCNGC 6 cut(s) 21, 445, 454, 562, 618, 709
PleI GAGTC 4 cut(s) 53, 131, 475, 540
PpsI GAGTC 4 cut(s) 53, 131, 475, 540
PshBI ATTAAT 1 cut(s) 693
Psp6I CCWGG 1 cut(s) 44
PspGI CCWGG 1 cut(s) 44
PspN4I GGNNCC 2 cut(s) 43, 396
PspPI GGNCC 1 cut(s) 578
PspXI VCTCGAGB 1 cut(s) 510
PsuI RGATCY 1 cut(s) 159
PvuII CAGCTG 2 cut(s) 19, 455
RsaI GTAC 1 cut(s) 75
RsaNI GTAC 1 cut(s) 74
RseI CAYNNNNRTG 1 cut(s) 475
SaqAI TTAA 3 cut(s) 609, 693, 712
SatI GCNGC 6 cut(s) 20, 444, 453, 561, 617, 708
Sau3AI GATC 5 cut(s) 77, 159, 181, 264, 595
Sau96I GGNCC 1 cut(s) 578
SchI GAGTC 4 cut(s) 53, 131, 476, 540
ScrFI CCNGG 1 cut(s) 46
SfaNI GCATC 1 cut(s) 430
Sfr274I CTCGAG 1 cut(s) 510
SlaI CTCGAG 1 cut(s) 510
SmiMI CAYNNNNRTG 1 cut(s) 475
SmlI CTYRAG 2 cut(s) 365, 510
SmoI CTYRAG 2 cut(s) 365, 510
SpeI ACTAGT 1 cut(s) 682
Sse9I AATT 3 cut(s) 313, 516, 554
SsiI CCGC 1 cut(s) 614
SspI AATATT 1 cut(s) 606
SspMI CTAG 3 cut(s) 11, 461, 683
StyD4I CCNGG 1 cut(s) 44
TaaI ACNGT 1 cut(s) 394
TaiI ACGT 1 cut(s) 289
TaqI TCGA 3 cut(s) 267, 341, 511
TasI AATT 3 cut(s) 313, 516, 554
Tru1I TTAA 3 cut(s) 609, 693, 712
Tru9I TTAA 3 cut(s) 609, 693, 712
TseI GCWGC 6 cut(s) 19, 443, 452, 560, 616, 707
TspGWI ACGGA 1 cut(s) 656
Van91I CCANNNNNTGG 1 cut(s) 404
VspI ATTAAT 1 cut(s) 693
XcmI CCANNNNNNNNNTGG 1 cut(s) 378
XhoI CTCGAG 1 cut(s) 510
XmiI GTMKAC 2 cut(s) 232, 591
XmnI GAANNNNTTC 1 cut(s) 630
XspI CTAG 3 cut(s) 11, 461, 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.