Rh4BG155000

transmembrane receptor protein serine/threonine kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
N/A
Physical Location & Seq
Forward (+)
27886532 .. 27901075
14544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG155000.1

Sequence Viewer

Length: 1422 bp
ATGCCTTGCTTACAAAATATTACTGGTTTGTTTTTGATCGTATGCATCATATGCTTGCCTGGTGAAGCTGCTTACCTGTTGGGTCGTAGCTGCACAAAACAATCTACTTCTGTCGGTAACTCTACCTTTCAACAATATAGTCGCCGCAACTCCTCCACCTTCAATTACAATCGCAACCAACTCCTCTCCAAACTTTCCTCCAAGGCAGAAGACCGCGGCTTCTACAAAGCCACCTTTGCAAAAAACTCAACTGGCTCGGCTGCCTATGGCTTCTTCCTATGTCGCGGAGACGTGGCCAGAGACATTTGCAAAGCCTGCGTGACCACTGCAACCCTGGAAGCAGTCCAACTCTGCAGTACCCGAATACAGGTTGTGATGTGGTACGATAAGTGCTTGTTATGCTACTCGAACCACTCCATTACTTCCAACACTTACAACAACACGCCTCATGTTATCATGCCAACGGCGCCGTATGTAGAGGAAGCACGCCGATTCAAGCAGGTGTTGGCAACTAGTATTAGGGAGCTAACTCGTAAGGTAATTGGCAATGTCAGTGTGGGTGCAGACCTCATTAAGTACTTCGCCACCAAAGAAACGACATATGGTAGTGTTTCGGGATCGAATAATTCTATCACACTGTATAGCCTGGGCCAGTGTACGCCAGACCTATCCATTGCATATTGCAAACGGTGTCTTGGGAGAGCATCAAGATATATTGTTCAAAGGGGTTTCCAAGGGGGACAGTCTCTATCTCCCCGTTGTATTATTATATACCAACCTTCTCCTTTCTACGGCAATTTGACTGCAGCACCACCACCAGACAGCCTTATCCGACCTAAAGGAAGAAGCATACCATCATTCAAAATCATTGTCGCCAGTACTGTTCTCGCTCTTGTTGTTGTCTCGGTGGTGCTTGCAGCTTTGGGCTACTGCTTCGTTGGTAGAAGAAACGAGTGCAGTGCTCATGCACAAGATAATGCCGGAAATGATATAGAGATTACTGTCGAGTCCTTGCAATTAGACTTGGAAACGATCGAGATAGCAACTAAGAAGTTTTCCGACGATAGCAAGTTAGGTGAAGGTGGATTTGGTGAAGTGTTCAAGGCTTGGGAATTATGGAATGAAGGGAAAGAGTTGGAGTTGATTGATCCACTGTTGAAAGATTCATGCAGTCCAAATGAATTTTTGAGATACATCCGGATTGGATTGTTGTGTGTTCAAGAAGACGCAAATAAGAGGCCAACTATGTCATTGGTTGTTCTAATGTTGACAACTGAAACTACTAAGCTTTCCAAACCAGAGAGACCTGCCTTCTTTACAGAAAGGTCTACCGGTCGCCACCATTATCAAATAGGTGATCATCATATTTGCTCCGCAGCCTCTGCCAATGGTTTAACAATTTCTGATTATGTGCCCCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase_Tyr Stress-antifung

Protein Analysis

473

Amino Acids

52.21

Weight (kDa)

8.81

Isoelectric Point (pI)

47.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 44 - 138 1.2e-17 Salt stress response/antifungal
Stress-antifung PF01657 162 - 258 6.5e-06 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 490
Acc36I ACCTGC 2 cut(s) 490, 1315
AccB1I GGYRCC 1 cut(s) 466
AccI GTMKAC 1 cut(s) 1328
AccII CGCG 2 cut(s) 216, 285
AccIII TCCGGA 1 cut(s) 1197
AciI CCGC 5 cut(s) 145, 214, 216, 285, 1374
AclWI GGATC 2 cut(s) 625, 1142
AcoI YGGCCR 1 cut(s) 294
AcsI RAATTY 1 cut(s) 1181
AcyI GRCGYC 1 cut(s) 467
AfaI GTAC 5 cut(s) 358, 383, 578, 658, 880
AfiI CCNNNNNNNGG 2 cut(s) 367, 791
AgeI ACCGGT 1 cut(s) 1331
AgsI TTSAA 8 cut(s) 131, 163, 496, 722, 862, 1102, 1159, 1220
AhlI ACTAGT 1 cut(s) 512
AjiI CACGTC 1 cut(s) 292
AjnI CCWGG 3 cut(s) 58, 333, 645
AjuI GAANNNNNNNTTGG 2 cut(s) 1071, 1103
AluBI AGCT 5 cut(s) 68, 90, 526, 920, 1288
AluI AGCT 5 cut(s) 68, 90, 526, 920, 1288
Alw21I GWGCWC 1 cut(s) 964
Alw26I GTCTC 5 cut(s) 282, 294, 750, 907, 1297
AlwI GGATC 2 cut(s) 625, 1142
AlwNI CAGNNNCTG 1 cut(s) 1382
Aor13HI TCCGGA 1 cut(s) 1197
AoxI GGCC 3 cut(s) 294, 649, 1238
ApeKI GCWGC 6 cut(s) 68, 90, 260, 806, 917, 1376
ApoI RAATTY 1 cut(s) 1181
ArsI GACNNNNNNTTYG 2 cut(s) 855, 887
AsiGI ACCGGT 1 cut(s) 1331
AspLEI GCGC 1 cut(s) 469
AspS9I GGNCC 1 cut(s) 649
AsuHPI GGTGA 4 cut(s) 74, 1088, 1103, 1367
BaeGI GKGCMC 1 cut(s) 1416
BalI TGGCCA 1 cut(s) 296
BanI GGYRCC 1 cut(s) 466
BbsI GAAGAC 2 cut(s) 216, 1230
Bbv12I GWGCWC 1 cut(s) 964
BbvI GCAGC 6 cut(s) 55, 77, 247, 818, 929, 1388
BccI CCATC 1 cut(s) 862
BceAI ACGGC 3 cut(s) 454, 480, 808
BcgI CGANNNNNNTGC 2 cut(s) 941, 975
BciT130I CCWGG 3 cut(s) 60, 335, 647
BclI TGATCA 1 cut(s) 1357
BcoDI GTCTC 5 cut(s) 282, 294, 750, 907, 1297
BcuI ACTAGT 1 cut(s) 512
BfaI CTAG 1 cut(s) 513
BfmI CTRYAG 2 cut(s) 352, 804
BfoI RGCGCY 1 cut(s) 470
BfuAI ACCTGC 2 cut(s) 490, 1315
BisI GCNGC 8 cut(s) 69, 91, 145, 217, 261, 807, 918, 1377
BlsI GCNGC 8 cut(s) 70, 92, 146, 218, 262, 808, 919, 1378
BmcAI AGTACT 2 cut(s) 578, 880
Bme1390I CCNGG 3 cut(s) 60, 335, 647
BmgBI CACGTC 1 cut(s) 292
BmgT120I GGNCC 1 cut(s) 649
BmiI GGNNCC 1 cut(s) 468
BmrFI CCNGG 3 cut(s) 60, 335, 647
BmsI GCATC 2 cut(s) 54, 713
BpiI GAAGAC 2 cut(s) 216, 1230
BsaHI GRCGYC 1 cut(s) 467
BsaI GGTCTC 1 cut(s) 1297
BsaJI CCNNGG 5 cut(s) 201, 214, 333, 646, 733
BsaWI WCCGGW 2 cut(s) 1197, 1331
Bsc4I CCNNNNNNNGG 2 cut(s) 367, 791
Bse118I RCCGGY 1 cut(s) 1331
Bse1I ACTGG 4 cut(s) 28, 256, 652, 876
Bse3DI GCAATG 2 cut(s) 553, 672
BseAI TCCGGA 1 cut(s) 1197
BseBI CCWGG 3 cut(s) 60, 335, 647
BseDI CCNNGG 5 cut(s) 201, 214, 333, 646, 733
BseGI GGATG 1 cut(s) 1194
BseLI CCNNNNNNNGG 2 cut(s) 367, 791
BseMI GCAATG 2 cut(s) 553, 672
BseNI ACTGG 4 cut(s) 28, 256, 652, 876
BseRI GAGGAG 2 cut(s) 142, 173
BseSI GKGCMC 1 cut(s) 1416
BseXI GCAGC 6 cut(s) 55, 77, 247, 818, 929, 1388
BsgI GTGCAG 3 cut(s) 76, 582, 976
Bsh1236I CGCG 2 cut(s) 216, 285
Bsh1285I CGRYCG 2 cut(s) 1035, 1336
BshFI GGCC 3 cut(s) 296, 651, 1240
BshNI GGYRCC 1 cut(s) 466
BshTI ACCGGT 1 cut(s) 1331
BsiEI CGRYCG 2 cut(s) 1035, 1336
BsiHKAI GWGCWC 1 cut(s) 964
BsiSI CCGG 3 cut(s) 981, 1198, 1332
BslFI GGGAC 1 cut(s) 753
BslI CCNNNNNNNGG 2 cut(s) 367, 791
BsmAI GTCTC 5 cut(s) 282, 294, 750, 907, 1297
BsmBI CGTCTC 1 cut(s) 282
BsmFI GGGAC 1 cut(s) 753
BsnI GGCC 3 cut(s) 296, 651, 1240
Bso31I GGTCTC 1 cut(s) 1297
Bsp1286I GDGCHC 2 cut(s) 964, 1416
Bsp13I TCCGGA 1 cut(s) 1197
Bsp143I GATC 5 cut(s) 36, 617, 1032, 1147, 1357
BspACI CCGC 5 cut(s) 145, 214, 216, 285, 1374
BspANI GGCC 3 cut(s) 296, 651, 1240
BspEI TCCGGA 1 cut(s) 1197
BspFNI CGCG 2 cut(s) 216, 285
BspLI GGNNCC 1 cut(s) 468
BspMAI CTGCAG 2 cut(s) 356, 808
BspMI ACCTGC 2 cut(s) 490, 1315
BspPI GGATC 2 cut(s) 625, 1142
BspT107I GGYRCC 1 cut(s) 466
BspTNI GGTCTC 1 cut(s) 1297
BsrDI GCAATG 2 cut(s) 553, 672
BsrFI RCCGGY 1 cut(s) 1331
BsrI ACTGG 4 cut(s) 28, 256, 652, 876
BssAI RCCGGY 1 cut(s) 1331
BssECI CCNNGG 5 cut(s) 201, 214, 333, 646, 733
BssMI GATC 5 cut(s) 36, 617, 1032, 1147, 1357
BssNI GRCGYC 1 cut(s) 467
BssT1I CCWWGG 2 cut(s) 201, 733
Bst2UI CCWGG 3 cut(s) 60, 335, 647
Bst4CI ACNGT 6 cut(s) 639, 690, 744, 883, 1003, 1155
BstACI GRCGYC 1 cut(s) 467
BstAPI GCANNNNNTGC 3 cut(s) 51, 315, 1382
BstC8I GCNNGC 4 cut(s) 56, 316, 487, 915
BstDEI CTNAG 2 cut(s) 1047, 1284
BstDSI CCRYGG 1 cut(s) 214
BstF5I GGATG 1 cut(s) 1194
BstFNI CGCG 2 cut(s) 216, 285
BstH2I RGCGCY 1 cut(s) 470
BstHHI GCGC 1 cut(s) 469
BstKTI GATC 5 cut(s) 39, 620, 1035, 1150, 1360
BstMAI GTCTC 5 cut(s) 282, 294, 750, 907, 1297
BstMBI GATC 5 cut(s) 36, 617, 1032, 1147, 1357
BstMCI CGRYCG 2 cut(s) 1035, 1336
BstMWI GCNNNNNNNGC 6 cut(s) 51, 236, 315, 399, 466, 1382
BstNI CCWGG 3 cut(s) 60, 335, 647
BstSCI CCNGG 3 cut(s) 58, 333, 645
BstSFI CTRYAG 2 cut(s) 352, 804
BstSLI GKGCMC 1 cut(s) 1416
BstUI CGCG 2 cut(s) 216, 285
BstV1I GCAGC 6 cut(s) 55, 77, 247, 818, 929, 1388
BstV2I GAAGAC 2 cut(s) 216, 1230
BsuRI GGCC 3 cut(s) 296, 651, 1240
BtgI CCRYGG 1 cut(s) 214
BtrI CACGTC 1 cut(s) 292
BtsCI GGATG 1 cut(s) 1194
BtsI GCAGTG 2 cut(s) 324, 964
BtsIMutI CAGTG 6 cut(s) 324, 559, 635, 659, 964, 1151
BveI ACCTGC 2 cut(s) 490, 1315
Cac8I GCNNGC 4 cut(s) 56, 316, 487, 915
CaiI CAGNNNCTG 1 cut(s) 1382
CfoI GCGC 1 cut(s) 469
Cfr10I RCCGGY 1 cut(s) 1331
Cfr13I GGNCC 1 cut(s) 649
Cfr42I CCGCGG 1 cut(s) 217
CseI GACGC 1 cut(s) 1235
Csp6I GTAC 5 cut(s) 357, 382, 577, 657, 879
CspAI ACCGGT 1 cut(s) 1331
CviAII CATG 4 cut(s) 449, 457, 965, 1167
CviQI GTAC 5 cut(s) 357, 382, 577, 657, 879
DdeI CTNAG 2 cut(s) 1047, 1284
DinI GGCGCC 1 cut(s) 468
DpnI GATC 5 cut(s) 38, 619, 1034, 1149, 1359
DpnII GATC 5 cut(s) 36, 617, 1032, 1147, 1357
EaeI YGGCCR 1 cut(s) 294
Eco130I CCWWGG 2 cut(s) 201, 733
Eco31I GGTCTC 1 cut(s) 1297
EcoRII CCWGG 3 cut(s) 58, 333, 645
EcoT14I CCWWGG 2 cut(s) 201, 733
EcoT22I ATGCAT 1 cut(s) 47
EgeI GGCGCC 1 cut(s) 468
EheI GGCGCC 1 cut(s) 468
ErhI CCWWGG 2 cut(s) 201, 733
Esp3I CGTCTC 1 cut(s) 282
FaeI CATG 4 cut(s) 452, 460, 968, 1170
FaqI GGGAC 1 cut(s) 753
FatI CATG 4 cut(s) 448, 456, 964, 1166
FauNDI CATATG 2 cut(s) 50, 601
FbaI TGATCA 1 cut(s) 1357
FblI GTMKAC 1 cut(s) 1328
Fnu4HI GCNGC 8 cut(s) 69, 91, 145, 217, 261, 807, 918, 1377
FokI GGATG 1 cut(s) 1181
Fsp4HI GCNGC 8 cut(s) 69, 91, 145, 217, 261, 807, 918, 1377
FspBI CTAG 1 cut(s) 513
GlaI GCGC 1 cut(s) 468
GluI GCNGC 8 cut(s) 69, 91, 145, 217, 261, 807, 918, 1377
HaeII RGCGCY 1 cut(s) 470
HaeIII GGCC 3 cut(s) 296, 651, 1240
HapII CCGG 3 cut(s) 981, 1198, 1332
HgaI GACGC 1 cut(s) 1235
HhaI GCGC 1 cut(s) 469
Hin1I GRCGYC 1 cut(s) 467
Hin1II CATG 4 cut(s) 452, 460, 968, 1170
Hin6I GCGC 1 cut(s) 467
HinP1I GCGC 1 cut(s) 467
HincII GTYRAC 1 cut(s) 1269
HindII GTYRAC 1 cut(s) 1269
HindIII AAGCTT 1 cut(s) 1286
HinfI GANTC 3 cut(s) 492, 1007, 1163
HpaII CCGG 3 cut(s) 981, 1198, 1332
HphI GGTGA 4 cut(s) 74, 1088, 1103, 1367
Hpy166II GTNNAC 3 cut(s) 657, 1269, 1329
Hpy188I TCNGA 3 cut(s) 833, 1060, 1405
Hpy188III TCNNGA 5 cut(s) 615, 708, 1036, 1198, 1220
Hpy8I GTNNAC 3 cut(s) 657, 1269, 1329
Hpy99I CGWCG 1 cut(s) 1064
HpyAV CCTTC 5 cut(s) 169, 789, 1073, 1118, 1321
HpyCH4III ACNGT 6 cut(s) 639, 690, 744, 883, 1003, 1155
HpyCH4IV ACGT 1 cut(s) 291
HpyF10VI GCNNNNNNNGC 6 cut(s) 51, 236, 315, 399, 466, 1382
HpyF3I CTNAG 2 cut(s) 1047, 1284
HpySE526I ACGT 1 cut(s) 291
Hsp92I GRCGYC 1 cut(s) 467
Hsp92II CATG 4 cut(s) 452, 460, 968, 1170
HspAI GCGC 1 cut(s) 467
KasI GGCGCC 1 cut(s) 466
Kpn2I TCCGGA 1 cut(s) 1197
Ksp22I TGATCA 1 cut(s) 1357
KspI CCGCGG 1 cut(s) 217
Kzo9I GATC 5 cut(s) 36, 617, 1032, 1147, 1357
LmnI GCTCC 2 cut(s) 523, 1376
Lsp1109I GCAGC 6 cut(s) 55, 77, 247, 818, 929, 1388
LweI GCATC 2 cut(s) 54, 713
MaeI CTAG 1 cut(s) 513
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 2 cut(s) 116, 319
MalI GATC 5 cut(s) 38, 619, 1034, 1149, 1359
MboI GATC 5 cut(s) 36, 617, 1032, 1147, 1357
MboII GAAGA 5 cut(s) 221, 265, 855, 957, 1235
MhlI GDGCHC 2 cut(s) 964, 1416
MlsI TGGCCA 1 cut(s) 296
MluCI AATT 8 cut(s) 163, 540, 625, 796, 1016, 1112, 1181, 1398
MluNI TGGCCA 1 cut(s) 296
Mly113I GGCGCC 1 cut(s) 467
MlyI GAGTC 1 cut(s) 1016
MmeI TCCRAC 5 cut(s) 370, 450, 856, 1083, 1116
MnlI CCTC 8 cut(s) 163, 194, 208, 456, 472, 578, 1230, 1390
Mox20I TGGCCA 1 cut(s) 296
Mph1103I ATGCAT 1 cut(s) 47
MroI TCCGGA 1 cut(s) 1197
MscI TGGCCA 1 cut(s) 296
MseI TTAA 3 cut(s) 573, 1394, 1420
Msp20I TGGCCA 1 cut(s) 296
MspA1I CMGCKG 1 cut(s) 216
MspI CCGG 3 cut(s) 981, 1198, 1332
MspR9I CCNGG 3 cut(s) 60, 335, 647
MvaI CCWGG 3 cut(s) 60, 335, 647
MvnI CGCG 2 cut(s) 216, 285
MwoI GCNNNNNNNGC 6 cut(s) 51, 236, 315, 399, 466, 1382
NarI GGCGCC 1 cut(s) 467
NdeI CATATG 2 cut(s) 50, 601
NdeII GATC 5 cut(s) 36, 617, 1032, 1147, 1357
NlaIII CATG 4 cut(s) 452, 460, 968, 1170
NlaIV GGNNCC 1 cut(s) 468
NmeAIII GCCGAG 1 cut(s) 236
NmuCI GTSAC 1 cut(s) 319
NsiI ATGCAT 1 cut(s) 47
PaqCI CACCTGC 1 cut(s) 490
PfeI GAWTC 2 cut(s) 492, 1163
PinAI ACCGGT 1 cut(s) 1331
PkrI GCNGC 8 cut(s) 70, 92, 146, 218, 262, 808, 919, 1378
Ple19I CGATCG 1 cut(s) 1035
PleI GAGTC 1 cut(s) 1015
PluTI GGCGCC 1 cut(s) 470
PpsI GAGTC 1 cut(s) 1015
Psp6I CCWGG 3 cut(s) 58, 333, 645
PspGI CCWGG 3 cut(s) 58, 333, 645
PspN4I GGNNCC 1 cut(s) 468
PspPI GGNCC 1 cut(s) 649
PstI CTGCAG 2 cut(s) 356, 808
PstNI CAGNNNCTG 1 cut(s) 1382
PvuI CGATCG 1 cut(s) 1035
RsaI GTAC 5 cut(s) 358, 383, 578, 658, 880
RsaNI GTAC 5 cut(s) 357, 382, 577, 657, 879
SacII CCGCGG 1 cut(s) 217
SaqAI TTAA 3 cut(s) 573, 1394, 1420
SatI GCNGC 8 cut(s) 69, 91, 145, 217, 261, 807, 918, 1377
Sau3AI GATC 5 cut(s) 36, 617, 1032, 1147, 1357
Sau96I GGNCC 1 cut(s) 649
ScaI AGTACT 2 cut(s) 578, 880
SchI GAGTC 1 cut(s) 1016
ScrFI CCNGG 3 cut(s) 60, 335, 647
SduI GDGCHC 2 cut(s) 964, 1416
SfaNI GCATC 2 cut(s) 54, 713
SfcI CTRYAG 2 cut(s) 352, 804
SfoI GGCGCC 1 cut(s) 468
Sfr303I CCGCGG 1 cut(s) 217
SgrBI CCGCGG 1 cut(s) 217
SpeI ACTAGT 1 cut(s) 512
Sse9I AATT 8 cut(s) 163, 540, 625, 796, 1016, 1112, 1181, 1398
SsiI CCGC 5 cut(s) 145, 214, 216, 285, 1374
SspDI GGCGCC 1 cut(s) 466
SspI AATATT 1 cut(s) 19
SspMI CTAG 1 cut(s) 513
StyD4I CCNGG 3 cut(s) 58, 333, 645
StyI CCWWGG 2 cut(s) 201, 733
TaaI ACNGT 6 cut(s) 639, 690, 744, 883, 1003, 1155
TaiI ACGT 1 cut(s) 294
TaqI TCGA 4 cut(s) 407, 620, 1005, 1035
TasI AATT 8 cut(s) 163, 540, 625, 796, 1016, 1112, 1181, 1398
TatI WGTACW 2 cut(s) 576, 878
TauI GCSGC 2 cut(s) 147, 219
TfiI GAWTC 2 cut(s) 492, 1163
Tru1I TTAA 3 cut(s) 573, 1394, 1420
Tru9I TTAA 3 cut(s) 573, 1394, 1420
TscAI CASTG 6 cut(s) 331, 559, 642, 659, 964, 1158
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 6 cut(s) 68, 90, 260, 806, 917, 1376
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 3 cut(s) 1137, 1155, 1194
TspRI CASTG 6 cut(s) 331, 559, 642, 659, 964, 1158
XapI RAATTY 1 cut(s) 1181
XcmI CCANNNNNNNNNTGG 1 cut(s) 331
XmiI GTMKAC 1 cut(s) 1328
XspI CTAG 1 cut(s) 513
ZrmI AGTACT 2 cut(s) 578, 880
Zsp2I ATGCAT 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.