Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

32903659 .. 32906767

Gene Structure 3109 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG189000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGCAGGCCTCCGGCGACGGGATGGGGAAGCAGAGGAAGAGCAGTGCCGCCTCGTACCAAAACGAGGAGGCTCGCCAGAATATGAAAATGTCGGCCAGTTCCATACCGGAAAGCGTCACCAGAGAAGATCCGACTACAAAGTACGAGTTGCTCAATGAGCTTGGGAAGGGGTCTTATGGTGCGGTTTATAAAGCTAGGGACTTAAAGACTTCCGAGCTGGTGGCAATTAAAGTCATTTCATTATCTCAAGGGGAGGAAGGGTATGAAGAGATTTGTGGTGAAATCGAGATGCTGCAGCAATGCAGTCATCCCAATGTCGTTCGGTACTTGGGGAGCTACCAAGGAGAAGAGTATCTTTGGATTGTGATGGAGTACTGTGGTGGTGGAAGTGTTGCTGATTTAATGAATGTTACCGAGGATGCTTTGGAGGAGTATCAAATAGCTTACATTTGCAGGGAAGCATTGAAGGGCCTTGCTTATTTGCACTCAATTTTCAAGGTCCACAGAGATATTAAGGGTGGTAATATTCTGTTAACTGAACAAGGAGATGTCAAGTTGGGTGACTTTGGGGTTGCAGCACAGCTTACAAGGACCATGTCAAAGCGCAATACGTTCATTGGGACTCCACATTGGATGGCTCCAGAAGTTATTCAGGAAAGCCGCTATGATGGAAAGAGTGGTGGCAAAAGAGTATATATGAAGATGCTCAGGAAATTTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006928 GO:0006950 GO:0006996 GO:0007010 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007266 GO:0007346 GO:0008150 GO:0008152 GO:0008219 GO:0008283 GO:0009893 GO:0009966 GO:0009987 GO:0010562 GO:0010604 GO:0010646 GO:0012501 GO:0016043 GO:0016301 GO:0016310 GO:0016477 GO:0016740 GO:0016772 GO:0016773 GO:0017016 GO:0017048 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0023014 GO:0023051 GO:0023052 GO:0030029 GO:0030036 GO:0031098 GO:0031267 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0040011 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043408 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048365 GO:0048518 GO:0048522 GO:0048583 GO:0048870 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051674 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

240

Amino Acids

26.87

Weight (kDa)

6.02

Isoelectric Point (pI)

44.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	48 - 225	3.9e-53	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	50 - 226	3e-39	Protein tyrosine and serine/threonine kinase
ABC1	PF03109	121 - 199	1.7e-07	ABC1 atypical kinase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	189
AciI	CCGC	3 cut(s)	48, 182, 661
AclWI	GGATC	1 cut(s)	122
AcoI	YGGCCR	1 cut(s)	93
AcsI	RAATTY	1 cut(s)	713
AfaI	GTAC	4 cut(s)	56, 143, 326, 374
AfiI	CCNNNNNNNGG	2 cut(s)	18, 64
AgsI	TTSAA	2 cut(s)	466, 496
AluBI	AGCT	6 cut(s)	160, 194, 217, 336, 443, 583
AluI	AGCT	6 cut(s)	160, 194, 217, 336, 443, 583
AlwI	GGATC	1 cut(s)	122
AoxI	GGCC	3 cut(s)	6, 93, 469
ApeKI	GCWGC	3 cut(s)	292, 295, 575
ApoI	RAATTY	1 cut(s)	713
Asp700I	GAANNNNTTC	1 cut(s)	648
AspLEI	GCGC	1 cut(s)	606
AspS9I	GGNCC	3 cut(s)	469, 499, 591
AsuHPI	GGTGA	3 cut(s)	109, 290, 572
AvaII	GGWCC	2 cut(s)	499, 591
BbvI	GCAGC	3 cut(s)	279, 307, 587
BccI	CCATC	4 cut(s)	16, 361, 628, 662
BfaI	CTAG	1 cut(s)	195
BfmI	CTRYAG	1 cut(s)	293
BisI	GCNGC	5 cut(s)	48, 293, 296, 576, 661
BlsI	GCNGC	5 cut(s)	49, 294, 297, 577, 662
BmcAI	AGTACT	1 cut(s)	374
Bme18I	GGWCC	2 cut(s)	499, 591
BmgT120I	GGNCC	3 cut(s)	469, 499, 591
BmiI	GGNNCC	1 cut(s)	639
BmsI	GCATC	3 cut(s)	279, 409, 693
BpmI	CTGGAG	1 cut(s)	624
Bpu10I	CCTNAGC	1 cut(s)	707
BpuEI	CTTGAG	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	340, 414
BsaWI	WCCGGW	1 cut(s)	106
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 64
Bse1I	ACTGG	1 cut(s)	96
Bse3DI	GCAATG	1 cut(s)	305
BseDI	CCNNGG	2 cut(s)	340, 414
BseGI	GGATG	4 cut(s)	27, 307, 424, 639
BseLI	CCNNNNNNNGG	2 cut(s)	18, 64
BseMI	GCAATG	1 cut(s)	305
BseMII	CTCAG	1 cut(s)	721
BseNI	ACTGG	1 cut(s)	96
BseRI	GAGGAG	2 cut(s)	80, 443
BseXI	GCAGC	3 cut(s)	279, 307, 587
BshFI	GGCC	3 cut(s)	8, 95, 471
BsiSI	CCGG	2 cut(s)	12, 107
BslFI	GGGAC	2 cut(s)	212, 634
BslI	CCNNNNNNNGG	2 cut(s)	18, 64
BsmFI	GGGAC	2 cut(s)	212, 634
BsnI	GGCC	3 cut(s)	8, 95, 471
Bsp143I	GATC	1 cut(s)	127
BspACI	CCGC	3 cut(s)	48, 182, 661
BspANI	GGCC	3 cut(s)	8, 95, 471
BspCNI	CTCAG	1 cut(s)	720
BspLI	GGNNCC	1 cut(s)	639
BspMAI	CTGCAG	1 cut(s)	297
BspPI	GGATC	1 cut(s)	122
BspQI	GCTCTTC	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	96
BssECI	CCNNGG	2 cut(s)	340, 414
BssMI	GATC	1 cut(s)	127
BssT1I	CCWWGG	1 cut(s)	340
Bst4CI	ACNGT	1 cut(s)	377
Bst6I	CTCTTC	3 cut(s)	32, 261, 342
BstC8I	GCNNGC	2 cut(s)	6, 73
BstDEI	CTNAG	1 cut(s)	707
BstF5I	GGATG	4 cut(s)	27, 307, 424, 639
BstHHI	GCGC	1 cut(s)	606
BstKTI	GATC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	1 cut(s)	157
BstSFI	CTRYAG	1 cut(s)	293
BstV1I	GCAGC	3 cut(s)	279, 307, 587
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BsuRI	GGCC	3 cut(s)	8, 95, 471
BtsCI	GGATG	4 cut(s)	27, 307, 424, 639
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	49
Cac8I	GCNNGC	2 cut(s)	6, 73
CfoI	GCGC	1 cut(s)	606
Cfr13I	GGNCC	3 cut(s)	469, 499, 591
CseI	GACGC	1 cut(s)	103
Csp6I	GTAC	4 cut(s)	55, 142, 325, 373
CviAII	CATG	1 cut(s)	595
CviQI	GTAC	4 cut(s)	55, 142, 325, 373
DdeI	CTNAG	1 cut(s)	707
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
EaeI	YGGCCR	1 cut(s)	93
Eam1104I	CTCTTC	3 cut(s)	32, 261, 342
EarI	CTCTTC	3 cut(s)	32, 261, 342
Eco130I	CCWWGG	1 cut(s)	340
Eco147I	AGGCCT	1 cut(s)	8
Eco47I	GGWCC	2 cut(s)	499, 591
EcoO109I	RGGNCCY	1 cut(s)	469
EcoT14I	CCWWGG	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	340
FaeI	CATG	1 cut(s)	598
FalI	AAGNNNNNCTT	2 cut(s)	339, 371
FaqI	GGGAC	2 cut(s)	212, 634
FatI	CATG	1 cut(s)	594
Fnu4HI	GCNGC	5 cut(s)	48, 293, 296, 576, 661
FokI	GGATG	4 cut(s)	34, 294, 431, 646
Fsp4HI	GCNGC	5 cut(s)	48, 293, 296, 576, 661
FspBI	CTAG	1 cut(s)	195
GlaI	GCGC	1 cut(s)	605
GluI	GCNGC	5 cut(s)	48, 293, 296, 576, 661
GsuI	CTGGAG	1 cut(s)	624
HaeIII	GGCC	3 cut(s)	8, 95, 471
HapII	CCGG	2 cut(s)	12, 107
HgaI	GACGC	1 cut(s)	103
HhaI	GCGC	1 cut(s)	606
Hin1II	CATG	1 cut(s)	598
Hin6I	GCGC	1 cut(s)	604
HinP1I	GCGC	1 cut(s)	604
HincII	GTYRAC	1 cut(s)	534
HindII	GTYRAC	1 cut(s)	534
HinfI	GANTC	1 cut(s)	622
HpaI	GTTAAC	1 cut(s)	534
HpaII	CCGG	2 cut(s)	12, 107
HphI	GGTGA	3 cut(s)	109, 290, 572
Hpy166II	GTNNAC	2 cut(s)	502, 534
Hpy188I	TCNGA	2 cut(s)	132, 214
Hpy188III	TCNNGA	4 cut(s)	286, 641, 653, 709
Hpy8I	GTNNAC	2 cut(s)	502, 534
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	3 cut(s)	160, 251, 460
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4IV	ACGT	1 cut(s)	611
HpyCH4V	TGCA	6 cut(s)	4, 295, 303, 453, 484, 575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	157
HpyF3I	CTNAG	1 cut(s)	707
HpySE526I	ACGT	1 cut(s)	611
Hsp92II	CATG	1 cut(s)	598
HspAI	GCGC	1 cut(s)	604
KspAI	GTTAAC	1 cut(s)	534
Kzo9I	GATC	1 cut(s)	127
LguI	GCTCTTC	1 cut(s)	32
LmnI	GCTCC	2 cut(s)	333, 643
Lsp1109I	GCAGC	3 cut(s)	279, 307, 587
LweI	GCATC	3 cut(s)	279, 409, 693
MaeI	CTAG	1 cut(s)	195
MaeII	ACGT	1 cut(s)	611
MaeIII	GTNAC	3 cut(s)	115, 409, 560
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MboII	GAAGA	5 cut(s)	49, 137, 278, 359, 712
MflI	RGATCY	1 cut(s)	127
MluCI	AATT	3 cut(s)	225, 489, 713
MlyI	GAGTC	1 cut(s)	616
MmeI	TCCRAC	1 cut(s)	155
MnlI	CCTC	8 cut(s)	19, 27, 58, 61, 61, 247, 409, 421
MroXI	GAANNNNTTC	1 cut(s)	648
MseI	TTAA	5 cut(s)	203, 228, 401, 513, 533
MslI	CAYNNNNRTG	1 cut(s)	312
MspI	CCGG	2 cut(s)	12, 107
MwoI	GCNNNNNNNGC	1 cut(s)	157
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	1 cut(s)	598
NlaIV	GGNNCC	1 cut(s)	639
NmuCI	GTSAC	2 cut(s)	115, 560
PceI	AGGCCT	1 cut(s)	8
PciSI	GCTCTTC	1 cut(s)	32
PdmI	GAANNNNTTC	1 cut(s)	648
PflFI	GACNNNGTC	1 cut(s)	595
PkrI	GCNGC	5 cut(s)	49, 294, 297, 577, 662
PleI	GAGTC	1 cut(s)	616
PpsI	GAGTC	1 cut(s)	616
PsiI	TTATAA	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	639
PspPI	GGNCC	3 cut(s)	469, 499, 591
PstI	CTGCAG	1 cut(s)	297
PsuI	RGATCY	1 cut(s)	127
PsyI	GACNNNGTC	1 cut(s)	595
RsaI	GTAC	4 cut(s)	56, 143, 326, 374
RsaNI	GTAC	4 cut(s)	55, 142, 325, 373
RseI	CAYNNNNRTG	1 cut(s)	312
SapI	GCTCTTC	1 cut(s)	32
SaqAI	TTAA	5 cut(s)	203, 228, 401, 513, 533
SatI	GCNGC	5 cut(s)	48, 293, 296, 576, 661
Sau3AI	GATC	1 cut(s)	127
Sau96I	GGNCC	3 cut(s)	469, 499, 591
ScaI	AGTACT	1 cut(s)	374
SchI	GAGTC	1 cut(s)	616
SetI	ASST	8 cut(s)	162, 196, 219, 338, 445, 501, 585, 614
SfaNI	GCATC	3 cut(s)	279, 409, 693
SfcI	CTRYAG	1 cut(s)	293
SinI	GGWCC	2 cut(s)	499, 591
SmiMI	CAYNNNNRTG	1 cut(s)	312
SmlI	CTYRAG	1 cut(s)	246
SmoI	CTYRAG	1 cut(s)	246
Sse9I	AATT	3 cut(s)	225, 489, 713
SseBI	AGGCCT	1 cut(s)	8
SsiI	CCGC	3 cut(s)	48, 182, 661
SspI	AATATT	1 cut(s)	526
SspMI	CTAG	1 cut(s)	195
StuI	AGGCCT	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	340
TaaI	ACNGT	1 cut(s)	377
TaiI	ACGT	1 cut(s)	614
TaqI	TCGA	1 cut(s)	285
TasI	AATT	3 cut(s)	225, 489, 713
TatI	WGTACW	1 cut(s)	372
TauI	GCSGC	2 cut(s)	50, 663
Tru1I	TTAA	5 cut(s)	203, 228, 401, 513, 533
Tru9I	TTAA	5 cut(s)	203, 228, 401, 513, 533
TscAI	CASTG	1 cut(s)	49
TseFI	GTSAC	2 cut(s)	115, 560
TseI	GCWGC	3 cut(s)	292, 295, 575
Tsp45I	GTSAC	2 cut(s)	115, 560
TspDTI	ATGAA	7 cut(s)	98, 228, 279, 419, 604, 707, 713
TspRI	CASTG	1 cut(s)	49
Tth111I	GACNNNGTC	1 cut(s)	595
VpaK11BI	GGWCC	2 cut(s)	499, 591
XapI	RAATTY	1 cut(s)	713
XmnI	GAANNNNTTC	1 cut(s)	648
XspI	CTAG	1 cut(s)	195
ZrmI	AGTACT	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.