Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

33186930 .. 33199858

Gene Structure 12929 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG192100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGAGGTCAAAAAGTACTCGGGGATTATCACTATTCTCCTGTTTCTGTCAATCCCTTGTGCAACTACATTAACCTTTGATTTGCCCAGATTTCCCTATCGTATCAAGACTATATCTTTGGAGGGAGATGCTTTCATGGATGGCAAATTCCTCTGCCTCACCAAAAGCGCTAAAAAAGAATCTCAAATCGAGAGCGTCAGTCGTGCCAACTACACTCAAAGTCAACCCTTCCTCCTCCGCGAAAGTACCACAGGAAAACTGGCCGATTTCAACACAAGTTTCACATTCATCAACTCGCAAGACAGAGACTCCTACGGTATGGACGGGCTCGCCACTTTCCTAGCACCAGTAGGAACCTTATTACTCAATTGCTCAATAGGAGTTGATGGTAGTCTCGGCCTCCCTGTCAACAATATCCTGCCGAGGAATCAGTACCCATTTGTGCAGCTGGAGTTTGTTATCTTTCAGAATGAAGATACAGCCATTGGAAATCCGAGCTACTCGTACGGTCATGTGGGTATAGATGTCCACTTTTTCAACTCTGTTCTTACTCAGCCTTGCAATGTAAGTATTAAGGAAGAACACCAAAATAGTGTTAGGATATGTTATAATTCTAGCAGAAATGATATTAGTGTTGCCTTCACTAGCTATGATGATGCGAGTGGTATGCAAGTGATGACTCATCTTTCTTACAAAATTGATCTGAGACAAATCTTGCCGGATCTGGTCACTGTTGGGGCTTTGGCTGGGAGACCTATTAGTACTCCGCAGAACATCATTTCGTGGGATTTTACTTCAACTTCTCTGGTTGACAATGAATTGCCCCAGCTTCTGAGAAACCGCAAGAGACAACTGGAGGACAAGGCCCCTATCTTCAAACCAATTGATCAGCCATATCTATTTAGAATGAATGAGTTGTTAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009893 GO:0010310 GO:0010726 GO:0010941 GO:0010942 GO:0016020 GO:0019222 GO:0031323 GO:0031325 GO:0043207 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0051194 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0098542 GO:2000377 GO:2000379

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Lectin_legB Pkinase

Protein Analysis

308

Amino Acids

34.55

Weight (kDa)

5.62

Isoelectric Point (pI)

34.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	24 - 269	8.3e-33	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	609
AccII	CGCG	1 cut(s)	240
AciI	CCGC	3 cut(s)	238, 767, 841
AclWI	GGATC	1 cut(s)	729
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	1 cut(s)	146
AfaI	GTAC	5 cut(s)	17, 247, 434, 506, 763
AfeI	AGCGCT	1 cut(s)	169
AgsI	TTSAA	4 cut(s)	271, 538, 798, 877
AluBI	AGCT	5 cut(s)	448, 498, 648, 829, 923
AluI	AGCT	5 cut(s)	448, 498, 648, 829, 923
Alw26I	GTCTC	5 cut(s)	300, 398, 700, 745, 841
AlwI	GGATC	1 cut(s)	729
AlwNI	CAGNNNCTG	1 cut(s)	832
Ama87I	CYCGRG	1 cut(s)	19
Aor51HI	AGCGCT	1 cut(s)	169
AoxI	GGCC	3 cut(s)	261, 397, 864
ApeKI	GCWGC	1 cut(s)	445
ApoI	RAATTY	1 cut(s)	146
ArsI	GACNNNNNNTTYG	2 cut(s)	100, 132
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	865
AsuHPI	GGTGA	1 cut(s)	151
AvaI	CYCGRG	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	330
BbvI	GCAGC	1 cut(s)	457
BccI	CCATC	2 cut(s)	134, 380
BcgI	CGANNNNNNTGC	2 cut(s)	649, 683
BclI	TGATCA	1 cut(s)	886
BcoDI	GTCTC	5 cut(s)	300, 398, 700, 745, 841
BfaI	CTAG	3 cut(s)	341, 615, 645
BfoI	RGCGCY	1 cut(s)	171
BisI	GCNGC	1 cut(s)	446
BlsI	GCNGC	1 cut(s)	447
BmcAI	AGTACT	2 cut(s)	17, 763
BmeT110I	CYCGRG	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	865
BmiI	GGNNCC	2 cut(s)	355, 867
BmsI	GCATC	2 cut(s)	118, 646
BpmI	CTGGAG	2 cut(s)	470, 875
BsaI	GGTCTC	1 cut(s)	745
BsaJI	CCNNGG	1 cut(s)	422
BsaXI	ACNNNNNCTCC	4 cut(s)	216, 246, 293, 323
Bse1I	ACTGG	3 cut(s)	264, 347, 858
Bse3DI	GCAATG	1 cut(s)	568
BseDI	CCNNGG	1 cut(s)	422
BseGI	GGATG	1 cut(s)	145
BseMI	GCAATG	1 cut(s)	568
BseMII	CTCAG	3 cut(s)	566, 695, 824
BseNI	ACTGG	3 cut(s)	264, 347, 858
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	457
BseYI	CCCAGC	2 cut(s)	746, 825
BsgI	GTGCAG	1 cut(s)	464
Bsh1236I	CGCG	1 cut(s)	240
BshFI	GGCC	3 cut(s)	263, 399, 866
BsiHKCI	CYCGRG	1 cut(s)	19
BsiSI	CCGG	1 cut(s)	719
BsiWI	CGTACG	1 cut(s)	504
BsmAI	GTCTC	5 cut(s)	300, 398, 700, 745, 841
BsnI	GGCC	3 cut(s)	263, 399, 866
Bso31I	GGTCTC	1 cut(s)	745
BsoBI	CYCGRG	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	3 cut(s)	700, 721, 886
BspACI	CCGC	3 cut(s)	238, 767, 841
BspANI	GGCC	3 cut(s)	263, 399, 866
BspCNI	CTCAG	3 cut(s)	565, 696, 825
BspFNI	CGCG	1 cut(s)	240
BspLI	GGNNCC	2 cut(s)	355, 867
BspPI	GGATC	1 cut(s)	729
BspTNI	GGTCTC	1 cut(s)	745
BsrDI	GCAATG	1 cut(s)	568
BsrI	ACTGG	3 cut(s)	264, 347, 858
BssECI	CCNNGG	1 cut(s)	422
BssMI	GATC	3 cut(s)	700, 721, 886
Bst4CI	ACNGT	3 cut(s)	317, 509, 733
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	3 cut(s)	552, 704, 833
BstF5I	GGATG	1 cut(s)	145
BstFNI	CGCG	1 cut(s)	240
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	3 cut(s)	703, 724, 889
BstMAI	GTCTC	5 cut(s)	300, 398, 700, 745, 841
BstMBI	GATC	3 cut(s)	700, 721, 886
BstUI	CGCG	1 cut(s)	240
BstV1I	GCAGC	1 cut(s)	457
BstX2I	RGATCY	1 cut(s)	721
BstYI	RGATCY	1 cut(s)	721
BsuRI	GGCC	3 cut(s)	263, 399, 866
BtsCI	GGATG	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	729
Cac8I	GCNNGC	1 cut(s)	330
CaiI	CAGNNNCTG	1 cut(s)	832
CfoI	GCGC	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	865
CseI	GACGC	1 cut(s)	184
Csp6I	GTAC	5 cut(s)	16, 246, 433, 505, 762
CviAII	CATG	2 cut(s)	136, 512
CviQI	GTAC	5 cut(s)	16, 246, 433, 505, 762
DdeI	CTNAG	3 cut(s)	552, 704, 833
DpnI	GATC	3 cut(s)	702, 723, 888
DpnII	GATC	3 cut(s)	700, 721, 886
EaeI	YGGCCR	1 cut(s)	261
Eco24I	GRGCYC	1 cut(s)	330
Eco31I	GGTCTC	1 cut(s)	745
Eco47III	AGCGCT	1 cut(s)	169
Eco88I	CYCGRG	1 cut(s)	19
EcoO109I	RGGNCCY	1 cut(s)	865
EcoT38I	GRGCYC	1 cut(s)	330
FaeI	CATG	2 cut(s)	139, 515
FatI	CATG	2 cut(s)	135, 511
FbaI	TGATCA	1 cut(s)	886
Fnu4HI	GCNGC	1 cut(s)	446
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	1 cut(s)	446
FspBI	CTAG	3 cut(s)	341, 615, 645
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	1 cut(s)	446
GsaI	CCCAGC	2 cut(s)	750, 829
GsuI	CTGGAG	2 cut(s)	470, 875
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	3 cut(s)	263, 399, 866
HapII	CCGG	1 cut(s)	719
HgaI	GACGC	1 cut(s)	184
HhaI	GCGC	1 cut(s)	170
Hin1II	CATG	2 cut(s)	139, 515
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HincII	GTYRAC	3 cut(s)	224, 409, 811
HindII	GTYRAC	3 cut(s)	224, 409, 811
HinfI	GANTC	4 cut(s)	179, 308, 427, 679
HpaII	CCGG	1 cut(s)	719
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	4 cut(s)	224, 409, 529, 811
Hpy188I	TCNGA	4 cut(s)	468, 495, 705, 834
Hpy188III	TCNNGA	2 cut(s)	106, 190
Hpy8I	GTNNAC	4 cut(s)	224, 409, 529, 811
HpyAV	CCTTC	2 cut(s)	238, 649
HpyCH4III	ACNGT	3 cut(s)	317, 509, 733
HpyCH4V	TGCA	4 cut(s)	62, 445, 561, 670
HpyF3I	CTNAG	3 cut(s)	552, 704, 833
Hsp92II	CATG	2 cut(s)	139, 515
HspAI	GCGC	1 cut(s)	168
Ksp22I	TGATCA	1 cut(s)	886
Kzo9I	GATC	3 cut(s)	700, 721, 886
Lsp1109I	GCAGC	1 cut(s)	457
LweI	GCATC	2 cut(s)	118, 646
MaeI	CTAG	3 cut(s)	341, 615, 645
MaeIII	GTNAC	1 cut(s)	727
MalI	GATC	3 cut(s)	702, 723, 888
MboI	GATC	3 cut(s)	700, 721, 886
MboII	GAAGA	3 cut(s)	485, 590, 865
MfeI	CAATTG	2 cut(s)	367, 882
MflI	RGATCY	1 cut(s)	721
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	6 cut(s)	146, 367, 610, 696, 818, 882
MlyI	GAGTC	2 cut(s)	302, 673
MnlI	CCTC	8 cut(s)	115, 161, 167, 242, 245, 410, 417, 850
MseI	TTAA	3 cut(s)	71, 573, 925
MspA1I	CMGCKG	1 cut(s)	448
MspI	CCGG	1 cut(s)	719
MunI	CAATTG	2 cut(s)	367, 882
MvnI	CGCG	1 cut(s)	240
NdeII	GATC	3 cut(s)	700, 721, 886
NlaIII	CATG	2 cut(s)	139, 515
NlaIV	GGNNCC	2 cut(s)	355, 867
NmeAIII	GCCGAG	2 cut(s)	375, 447
NmuCI	GTSAC	1 cut(s)	727
PfeI	GAWTC	2 cut(s)	179, 427
Pfl23II	CGTACG	1 cut(s)	504
PkrI	GCNGC	1 cut(s)	447
PleI	GAGTC	2 cut(s)	302, 673
PpsI	GAGTC	2 cut(s)	302, 673
PsiI	TTATAA	1 cut(s)	609
PspFI	CCCAGC	2 cut(s)	746, 825
PspLI	CGTACG	1 cut(s)	504
PspN4I	GGNNCC	2 cut(s)	355, 867
PspPI	GGNCC	1 cut(s)	865
PstNI	CAGNNNCTG	1 cut(s)	832
PsuI	RGATCY	1 cut(s)	721
PvuII	CAGCTG	1 cut(s)	448
RsaI	GTAC	5 cut(s)	17, 247, 434, 506, 763
RsaNI	GTAC	5 cut(s)	16, 246, 433, 505, 762
SaqAI	TTAA	3 cut(s)	71, 573, 925
SatI	GCNGC	1 cut(s)	446
Sau3AI	GATC	3 cut(s)	700, 721, 886
Sau96I	GGNCC	1 cut(s)	865
ScaI	AGTACT	2 cut(s)	17, 763
SchI	GAGTC	2 cut(s)	302, 673
SduI	GDGCHC	1 cut(s)	330
SetI	ASST	9 cut(s)	9, 77, 359, 450, 500, 650, 757, 831, 925
SfaNI	GCATC	2 cut(s)	118, 646
Sse9I	AATT	6 cut(s)	146, 367, 610, 696, 818, 882
SsiI	CCGC	3 cut(s)	238, 767, 841
SspMI	CTAG	3 cut(s)	341, 615, 645
TaaI	ACNGT	3 cut(s)	317, 509, 733
TaqI	TCGA	1 cut(s)	189
TasI	AATT	6 cut(s)	146, 367, 610, 696, 818, 882
TatI	WGTACW	2 cut(s)	15, 761
TfiI	GAWTC	2 cut(s)	179, 427
Tru1I	TTAA	3 cut(s)	71, 573, 925
Tru9I	TTAA	3 cut(s)	71, 573, 925
TscAI	CASTG	1 cut(s)	736
TseFI	GTSAC	1 cut(s)	727
TseI	GCWGC	1 cut(s)	445
Tsp45I	GTSAC	1 cut(s)	727
TspDTI	ATGAA	5 cut(s)	124, 277, 486, 831, 923
TspRI	CASTG	1 cut(s)	736
XapI	RAATTY	1 cut(s)	146
XcmI	CCANNNNNNNNNTGG	1 cut(s)	256
XspI	CTAG	3 cut(s)	341, 615, 645
ZrmI	AGTACT	2 cut(s)	17, 763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.