Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

37225091 .. 37231719

Gene Structure 6629 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG214100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGACAAAAGTTTACCTGCGAAAGAAAAAGATACCTATTTCCTTGTGTGGTTGCTTCTTCCCTGATTCCAATTGTTCGTGGGGGTTGGACTGGCATCGGTCACTGAGACCTCGTTTAACTGATTCTGGAGGGCTATGGCTTTTTTCTTCTGCACTGGAGTGCTCCATCACATGGGACACCACTGCTTACTGCTTCAGGATTTATGGTCTTCCTCAAGAGCTATTGAGCAAATGCATGTTAGATCACAGGAGCGAGCAGGGAAGAGAAGGATCGCTCAGAGTATGGGGACTTTGGGGAGAATTTGGAGTGATGAAGTACAAAGGTCCTCAAGTTCTAGAGCTTCCTAGAGGAACAAGGAGATATCTGATCACTTGTTATGTATGGTCAGGACCTTTAGCTTCTCAACTCTTGTGCTTGTATTTGTGTGAGAAGGGATTTCAAGATATGAAACTAATGCTGAATCTTTTAAAATTGAATCATTGGTTCTACTTTTCTGAGCCAAAGGCTGTAGTTGAAGTTGAACTTGGGAAGCAGACCACAACTTTATCTGGGATTGTATCACTGAGTCAAAATGAGTGGACCGCGAGCTACAATGATGAAAACAAAGCAGCTGTGAAGCTGCCGATTGAGGAGACTCATCAAGACTTGCTGGAATGGTTCTTGAACCATAGAGCCAGAGAGCCTCAGACGCTCACTAAGTCACTGCCTCACTCTCTGCCCTCACTCCATTCTCTAACCCAGACGATCGAAAGATTCAAAACCCAGACGAGCAAGACGATCGCACTCAAAGATCGGACGATCGCCCAGACGAGCAAGACCATTGCGTCTTCGATTTGTGATTTGGCTGAGGTTGACTTTCTGGGACAGCTCCACCATCCAAATCTTGTAAAGCTTATTGGGTACTGCATTGAAGATGATCAACGTATTCAAGGGCTACTTGACATGGTTGTTTTGGAATACAATAGCACTCAGTATAAAATGATGCAATTCATCAACAATCAAGGATGCATAAAGGAGACTTTGAATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

343

Amino Acids

39.48

Weight (kDa)

8.19

Isoelectric Point (pI)

31.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	823
Acc36I	ACCTGC	1 cut(s)	24
AccB7I	CCANNNNNTGG	1 cut(s)	171
AccII	CGCG	1 cut(s)	584
AciI	CCGC	1 cut(s)	582
AclWI	GGATC	1 cut(s)	277
AcsI	RAATTY	2 cut(s)	299, 1024
AcuI	CTGAAG	1 cut(s)	178
AfaI	GTAC	2 cut(s)	317, 902
AfiI	CCNNNNNNNGG	1 cut(s)	171
AgsI	TTSAA	9 cut(s)	440, 475, 515, 521, 664, 757, 911, 929, 1024
AjuI	GAANNNNNNNTTGG	2 cut(s)	507, 539
AleI	CACNNNNGTG	1 cut(s)	157
AluBI	AGCT	8 cut(s)	220, 340, 398, 588, 611, 619, 868, 892
AluI	AGCT	8 cut(s)	220, 340, 398, 588, 611, 619, 868, 892
Alw21I	GWGCWC	1 cut(s)	164
Alw26I	GTCTC	3 cut(s)	100, 626, 1010
AlwI	GGATC	1 cut(s)	277
ApeKI	GCWGC	2 cut(s)	608, 619
ApoI	RAATTY	2 cut(s)	299, 1024
AspS9I	GGNCC	3 cut(s)	323, 389, 579
AvaII	GGWCC	3 cut(s)	323, 389, 579
BbsI	GAAGAC	2 cut(s)	200, 819
Bbv12I	GWGCWC	1 cut(s)	164
BbvCI	CCTCAGC	1 cut(s)	846
BbvI	GCAGC	2 cut(s)	606, 620
BccI	CCATC	2 cut(s)	173, 882
BcgI	CGANNNNNNTGC	2 cut(s)	760, 794
BclI	TGATCA	2 cut(s)	366, 916
BcoDI	GTCTC	3 cut(s)	100, 626, 1010
BfaI	CTAG	2 cut(s)	335, 345
BfmI	CTRYAG	1 cut(s)	507
BfuAI	ACCTGC	1 cut(s)	24
BisI	GCNGC	2 cut(s)	609, 620
BlsI	GCNGC	2 cut(s)	610, 621
Bme18I	GGWCC	3 cut(s)	323, 389, 579
BmgT120I	GGNCC	3 cut(s)	323, 389, 579
BmsI	GCATC	3 cut(s)	103, 972, 995
BpiI	GAAGAC	2 cut(s)	200, 819
BpmI	CTGGAG	2 cut(s)	147, 176
Bpu10I	CCTNAGC	1 cut(s)	846
BpuEI	CTTGAG	2 cut(s)	198, 312
BsaI	GGTCTC	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	1 cut(s)	171
Bse1I	ACTGG	2 cut(s)	95, 159
Bse3DI	GCAATG	1 cut(s)	819
BseGI	GGATG	2 cut(s)	874, 1010
BseLI	CCNNNNNNNGG	1 cut(s)	171
BseMI	GCAATG	1 cut(s)	819
BseMII	CTCAG	7 cut(s)	95, 289, 486, 554, 698, 837, 983
BseNI	ACTGG	2 cut(s)	95, 159
BseRI	GAGGAG	1 cut(s)	644
BseXI	GCAGC	2 cut(s)	606, 620
BsgI	GTGCAG	1 cut(s)	135
Bsh1236I	CGCG	1 cut(s)	584
Bsh1285I	CGRYCG	3 cut(s)	747, 780, 801
BsiEI	CGRYCG	3 cut(s)	747, 780, 801
BsiHKAI	GWGCWC	1 cut(s)	164
BslFI	GGGAC	3 cut(s)	188, 300, 876
BslI	CCNNNNNNNGG	1 cut(s)	171
BsmAI	GTCTC	3 cut(s)	100, 626, 1010
BsmFI	GGGAC	3 cut(s)	188, 300, 876
Bso31I	GGTCTC	1 cut(s)	100
Bsp1286I	GDGCHC	1 cut(s)	164
Bsp143I	GATC	8 cut(s)	241, 269, 366, 744, 777, 790, 798, 916
BspACI	CCGC	1 cut(s)	582
BspCNI	CTCAG	7 cut(s)	96, 288, 487, 555, 697, 838, 982
BspFNI	CGCG	1 cut(s)	584
BspMI	ACCTGC	1 cut(s)	24
BspPI	GGATC	1 cut(s)	277
BspTNI	GGTCTC	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	819
BsrI	ACTGG	2 cut(s)	95, 159
BssMI	GATC	8 cut(s)	241, 269, 366, 744, 777, 790, 798, 916
Bst6I	CTCTTC	1 cut(s)	256
BstC8I	GCNNGC	2 cut(s)	254, 586
BstDEI	CTNAG	8 cut(s)	104, 275, 495, 563, 684, 696, 846, 969
BstF5I	GGATG	2 cut(s)	874, 1010
BstFNI	CGCG	1 cut(s)	584
BstKTI	GATC	8 cut(s)	244, 272, 369, 747, 780, 793, 801, 919
BstMAI	GTCTC	3 cut(s)	100, 626, 1010
BstMBI	GATC	8 cut(s)	241, 269, 366, 744, 777, 790, 798, 916
BstMCI	CGRYCG	3 cut(s)	747, 780, 801
BstMWI	GCNNNNNNNGC	1 cut(s)	688
BstNSI	RCATGY	1 cut(s)	238
BstSFI	CTRYAG	1 cut(s)	507
BstUI	CGCG	1 cut(s)	584
BstV1I	GCAGC	2 cut(s)	606, 620
BstV2I	GAAGAC	2 cut(s)	200, 819
BtsCI	GGATG	2 cut(s)	874, 1010
BtsI	GCAGTG	2 cut(s)	180, 701
BtsIMutI	CAGTG	5 cut(s)	101, 152, 180, 560, 701
BveI	ACCTGC	1 cut(s)	24
Cac8I	GCNNGC	2 cut(s)	254, 586
Cfr13I	GGNCC	3 cut(s)	323, 389, 579
CseI	GACGC	2 cut(s)	697, 813
Csp6I	GTAC	2 cut(s)	316, 901
CspCI	CAANNNNNGTGG	2 cut(s)	557, 592
CviAII	CATG	3 cut(s)	171, 235, 943
CviQI	GTAC	2 cut(s)	316, 901
DdeI	CTNAG	8 cut(s)	104, 275, 495, 563, 684, 696, 846, 969
DpnI	GATC	8 cut(s)	243, 271, 368, 746, 779, 792, 800, 918
DpnII	GATC	8 cut(s)	241, 269, 366, 744, 777, 790, 798, 916
DraI	TTTAAA	1 cut(s)	468
DrdI	GACNNNNNNGTC	1 cut(s)	823
DseDI	GACNNNNNNGTC	1 cut(s)	823
Eam1104I	CTCTTC	1 cut(s)	256
EarI	CTCTTC	1 cut(s)	256
Eco31I	GGTCTC	1 cut(s)	100
Eco32I	GATATC	1 cut(s)	362
Eco47I	GGWCC	3 cut(s)	323, 389, 579
Eco57I	CTGAAG	1 cut(s)	178
EcoO109I	RGGNCCY	2 cut(s)	323, 389
EcoRV	GATATC	1 cut(s)	362
EcoT22I	ATGCAT	2 cut(s)	236, 1010
FaeI	CATG	3 cut(s)	174, 238, 946
FalI	AAGNNNNNCTT	4 cut(s)	507, 539, 921, 953
FaqI	GGGAC	3 cut(s)	188, 300, 876
FatI	CATG	3 cut(s)	170, 234, 942
FbaI	TGATCA	2 cut(s)	366, 916
Fnu4HI	GCNGC	2 cut(s)	609, 620
FokI	GGATG	2 cut(s)	861, 1017
Fsp4HI	GCNGC	2 cut(s)	609, 620
FspBI	CTAG	2 cut(s)	335, 345
GluI	GCNGC	2 cut(s)	609, 620
GsuI	CTGGAG	2 cut(s)	147, 176
HgaI	GACGC	2 cut(s)	697, 813
Hin1II	CATG	3 cut(s)	174, 238, 946
HincII	GTYRAC	1 cut(s)	853
HindII	GTYRAC	1 cut(s)	853
HindIII	AAGCTT	1 cut(s)	890
HinfI	GANTC	7 cut(s)	65, 122, 460, 475, 565, 634, 753
Hpy166II	GTNNAC	3 cut(s)	13, 579, 853
Hpy188I	TCNGA	5 cut(s)	278, 366, 496, 687, 795
Hpy188III	TCNNGA	8 cut(s)	126, 196, 215, 335, 387, 440, 641, 661
Hpy8I	GTNNAC	3 cut(s)	13, 579, 853
HpyAV	CCTTC	2 cut(s)	260, 424
HpyCH4IV	ACGT	1 cut(s)	922
HpyCH4V	TGCA	5 cut(s)	152, 234, 906, 985, 1008
HpyF10VI	GCNNNNNNNGC	1 cut(s)	688
HpyF3I	CTNAG	8 cut(s)	104, 275, 495, 563, 684, 696, 846, 969
HpySE526I	ACGT	1 cut(s)	922
Hsp92II	CATG	3 cut(s)	174, 238, 946
Ksp22I	TGATCA	2 cut(s)	366, 916
Kzo9I	GATC	8 cut(s)	241, 269, 366, 744, 777, 790, 798, 916
LmnI	GCTCC	3 cut(s)	167, 249, 873
Lsp1109I	GCAGC	2 cut(s)	606, 620
LweI	GCATC	3 cut(s)	103, 972, 995
MaeI	CTAG	2 cut(s)	335, 345
MaeII	ACGT	1 cut(s)	922
MaeIII	GTNAC	2 cut(s)	99, 699
MalI	GATC	8 cut(s)	243, 271, 368, 746, 779, 792, 800, 918
MboI	GATC	8 cut(s)	241, 269, 366, 744, 777, 790, 798, 916
MboII	GAAGA	6 cut(s)	49, 138, 200, 273, 819, 923
MfeI	CAATTG	1 cut(s)	70
MhlI	GDGCHC	1 cut(s)	164
MluCI	AATT	5 cut(s)	70, 299, 470, 986, 1024
MlyI	GAGTC	2 cut(s)	574, 628
MmeI	TCCRAC	1 cut(s)	66
Mph1103I	ATGCAT	2 cut(s)	236, 1010
MseI	TTAA	2 cut(s)	116, 467
MslI	CAYNNNNRTG	1 cut(s)	157
MspA1I	CMGCKG	1 cut(s)	611
MunI	CAATTG	1 cut(s)	70
MvnI	CGCG	1 cut(s)	584
MwoI	GCNNNNNNNGC	1 cut(s)	688
NdeII	GATC	8 cut(s)	241, 269, 366, 744, 777, 790, 798, 916
NlaIII	CATG	3 cut(s)	174, 238, 946
NmuCI	GTSAC	2 cut(s)	99, 699
NsiI	ATGCAT	2 cut(s)	236, 1010
NspI	RCATGY	1 cut(s)	238
OliI	CACNNNNGTG	1 cut(s)	157
PcsI	WCGNNNNNNNCGW	1 cut(s)	773
PfeI	GAWTC	5 cut(s)	65, 122, 460, 475, 753
PflMI	CCANNNNNTGG	1 cut(s)	171
PkrI	GCNGC	2 cut(s)	610, 621
Ple19I	CGATCG	3 cut(s)	747, 780, 801
PleI	GAGTC	2 cut(s)	573, 628
PpsI	GAGTC	2 cut(s)	573, 628
PpuMI	RGGWCCY	2 cut(s)	323, 389
Psp5II	RGGWCCY	2 cut(s)	323, 389
PspPI	GGNCC	3 cut(s)	323, 389, 579
PspPPI	RGGWCCY	2 cut(s)	323, 389
PvuI	CGATCG	3 cut(s)	747, 780, 801
PvuII	CAGCTG	1 cut(s)	611
RsaI	GTAC	2 cut(s)	317, 902
RsaNI	GTAC	2 cut(s)	316, 901
RseI	CAYNNNNRTG	1 cut(s)	157
SaqAI	TTAA	2 cut(s)	116, 467
SatI	GCNGC	2 cut(s)	609, 620
Sau3AI	GATC	8 cut(s)	241, 269, 366, 744, 777, 790, 798, 916
Sau96I	GGNCC	3 cut(s)	323, 389, 579
SchI	GAGTC	2 cut(s)	574, 628
SduI	GDGCHC	1 cut(s)	164
SfaNI	GCATC	3 cut(s)	103, 972, 995
SfcI	CTRYAG	1 cut(s)	507
SinI	GGWCC	3 cut(s)	323, 389, 579
SmiMI	CAYNNNNRTG	1 cut(s)	157
SmlI	CTYRAG	2 cut(s)	213, 327
SmoI	CTYRAG	2 cut(s)	213, 327
Sse9I	AATT	5 cut(s)	70, 299, 470, 986, 1024
SsiI	CCGC	1 cut(s)	582
SspMI	CTAG	2 cut(s)	335, 345
TaiI	ACGT	1 cut(s)	925
TaqI	TCGA	2 cut(s)	747, 830
TaqII	GACCGA	1 cut(s)	87
TasI	AATT	5 cut(s)	70, 299, 470, 986, 1024
TatI	WGTACW	1 cut(s)	315
TfiI	GAWTC	5 cut(s)	65, 122, 460, 475, 753
Tru1I	TTAA	2 cut(s)	116, 467
Tru9I	TTAA	2 cut(s)	116, 467
TscAI	CASTG	5 cut(s)	108, 159, 187, 567, 708
TseFI	GTSAC	2 cut(s)	99, 699
TseI	GCWGC	2 cut(s)	608, 619
Tsp45I	GTSAC	2 cut(s)	99, 699
TspDTI	ATGAA	4 cut(s)	326, 461, 612, 979
TspRI	CASTG	5 cut(s)	108, 159, 187, 567, 708
Van91I	CCANNNNNTGG	1 cut(s)	171
VpaK11BI	GGWCC	3 cut(s)	323, 389, 579
XapI	RAATTY	2 cut(s)	299, 1024
XbaI	TCTAGA	1 cut(s)	334
XceI	RCATGY	1 cut(s)	238
XspI	CTAG	2 cut(s)	335, 345
Zsp2I	ATGCAT	2 cut(s)	236, 1010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.