Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

45324964 .. 45329290

Gene Structure 4327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG279200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGGCATCCGATCTTAATACTGAATTAGCCAAGAAGACATTTGTTTTTGGCTTAAAAGTTTGGGTATTAACAGGGATCCTTGTGGGAGTTTTTATTGTGACGATTCTACTGGTGCTATCAATTTGTCTTACTTCGCGAAAGAAATCCAGAAAGTCAAATGACATGCTTCCTCTTAACCAAATTCCAAATGTTTCAAGGGAAATTAAAGAGATTAGGGTTGATCAAGCTTCAGCAAATAACCATATGCCCCGTGGTTCTCTCCTGACCCTTAATGAGAAATTCAGTGACAGAGAATCAGAGAAAGTTTTGATTCATAAAAATGGAGATAGTAGCAGTCGATCAGGCTCATTTAATAATGCAGAGAAGGAAAATGTTGGCTCTCAATCTGGAGACGAGGGTGGTGCAGGGTCAGCTTATACACAGAAGCCATCTTCACATCCTATAACTGCCCCTTCACCTCTTTGTGGTCTACCGGAATTCTCTCACCTTGGTTGGGGTCACTGGTTTACATTACGGGATCTTGAATTTGCAACAAACCGGTTTTCAAAGGAAAATGTCATTGGTGAGGGTGGATATGGAGTTGTTTATCGCGGTAATCTGATTAATGGAACTCCTGTGGCTGTGAAGAAGCTACTCAACAACCTAGGACAAGCAGAGAAGGAATTTAGGGTGGAAGTTGAGGCCATTGGGCATGTACGACACAAAAACTTGGTTCGTCTTCTAGGATACTGCATCGAAGGCACCCATAGGATGCTGGTTTATGAGTATGTCAACAATGGAAATCTGGAGCAATGGCTTCATGGAGCTATGCGACATCATGGATATCTAACATGGGAGGCGCGCATGAAAGTGCTCCTTGGCACTGCTAAAGCGCTGGCTTATTTGCATGAGGCCATCGAGCCAAAAGTAGTGCATCGAGATATCAAGTCGAGTAATATCTTGCTTGATGATGACTTCAATGCTAAAATATCTGACTTTGGTCTGGCAAAGATGCTAATGGCTGGAAAGAGCCATATTACGACTAGAGTTATGGGAACCTTTGGATATGTAGCCCCCGAATATGCCAATTCTGGCCTTTTAAACGAGAAGAGTGATGTTTATAGCTTTGGCGTTGTGATTTTGGAAGCAATTACTGGAAGAGACCCAGTGGACTATGGTCGGCAAGCACAAGAGGTAAATTTGGTAGACTGGCTCAAGATGATGGTTGGAAGTCGGCGTTCAGAGGAGGTGGTGGATCCAAACATTGAGACCAGACCATCGACAAGCGCCCTTAAACGAGCCCTCTTGACTGCATTGAGGTGTGTAGATCCTGATTCTGATAAAAGACCAAAGATGGGTCAAGTTGTTCGCATGCTTGAATCCGAGGAATATCCTGTACTTCGAGAGGTATGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

465

Amino Acids

51.75

Weight (kDa)

8.41

Isoelectric Point (pI)

36.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	182 - 449	1.8e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	184 - 452	9.9e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	740
AccI	GTMKAC	2 cut(s)	469, 1185
AccII	CGCG	3 cut(s)	136, 591, 841
AciI	CCGC	1 cut(s)	591
AclWI	GGATC	6 cut(s)	70, 83, 525, 1229, 1242, 1301
AcsI	RAATTY	6 cut(s)	180, 278, 476, 524, 662, 1177
AcuI	CTGAAG	1 cut(s)	213
AfaI	GTAC	2 cut(s)	696, 1377
AfeI	AGCGCT	1 cut(s)	873
AfiI	CCNNNNNNNGG	3 cut(s)	464, 493, 1334
AgeI	ACCGGT	1 cut(s)	537
AgsI	TTSAA	5 cut(s)	195, 524, 546, 958, 1358
AjuI	GAANNNNNNNTTGG	2 cut(s)	543, 575
AluBI	AGCT	5 cut(s)	227, 413, 631, 806, 1104
AluI	AGCT	5 cut(s)	227, 413, 631, 806, 1104
Alw21I	GWGCWC	1 cut(s)	855
Alw26I	GTCTC	3 cut(s)	384, 1134, 1241
AlwI	GGATC	6 cut(s)	70, 83, 525, 1229, 1242, 1301
Aor51HI	AGCGCT	1 cut(s)	873
AoxI	GGCC	3 cut(s)	681, 891, 1072
ApoI	RAATTY	6 cut(s)	180, 278, 476, 524, 662, 1177
AseI	ATTAAT	1 cut(s)	603
AsiGI	ACCGGT	1 cut(s)	537
AspA2I	CCTAGG	1 cut(s)	643
AspLEI	GCGC	4 cut(s)	841, 843, 874, 1268
AsuHPI	GGTGA	3 cut(s)	447, 476, 575
AvrII	CCTAGG	1 cut(s)	643
BamHI	GGATCC	2 cut(s)	75, 1234
BanI	GGYRCC	1 cut(s)	740
BanII	GRGCYC	1 cut(s)	1282
BbsI	GAAGAC	2 cut(s)	41, 710
Bbv12I	GWGCWC	1 cut(s)	855
BccI	CCATC	5 cut(s)	436, 902, 1195, 1264, 1327
BcgI	CGANNNNNNTGC	2 cut(s)	383, 417
BciVI	GTATCC	1 cut(s)	719
BclI	TGATCA	1 cut(s)	220
BcoDI	GTCTC	3 cut(s)	384, 1134, 1241
BfaI	CTAG	3 cut(s)	644, 722, 1023
BfoI	RGCGCY	2 cut(s)	875, 1269
BfuI	GTATCC	1 cut(s)	719
BlnI	CCTAGG	1 cut(s)	643
BmiI	GGNNCC	4 cut(s)	77, 742, 1036, 1236
BmrI	ACTGGG	1 cut(s)	1139
BmsI	GCATC	5 cut(s)	14, 741, 741, 922, 981
BmuI	ACTGGG	1 cut(s)	1139
BoxI	GACNNNNGTC	2 cut(s)	978, 1155
BpiI	GAAGAC	2 cut(s)	41, 710
BpmI	CTGGAG	2 cut(s)	408, 806
BpuEI	CTTGAG	1 cut(s)	1178
BsaI	GGTCTC	2 cut(s)	1134, 1241
BsaJI	CCNNGG	5 cut(s)	250, 487, 643, 856, 1362
BsaWI	WCCGGW	2 cut(s)	472, 537
Bsc4I	CCNNNNNNNGG	3 cut(s)	464, 493, 1334
Bse118I	RCCGGY	1 cut(s)	537
Bse1I	ACTGG	5 cut(s)	114, 506, 1138, 1145, 1193
Bse3DI	GCAATG	1 cut(s)	797
BseDI	CCNNGG	5 cut(s)	250, 487, 643, 856, 1362
BseGI	GGATG	3 cut(s)	5, 436, 756
BseLI	CCNNNNNNNGG	3 cut(s)	464, 493, 1334
BseMI	GCAATG	1 cut(s)	797
BseNI	ACTGG	5 cut(s)	114, 506, 1138, 1145, 1193
BsePI	GCGCGC	1 cut(s)	839
BseRI	GAGGAG	1 cut(s)	1238
BsgI	GTGCAG	1 cut(s)	423
Bsh1236I	CGCG	3 cut(s)	136, 591, 841
BshFI	GGCC	3 cut(s)	683, 893, 1074
BshNI	GGYRCC	1 cut(s)	740
BshTI	ACCGGT	1 cut(s)	537
BsiHKAI	GWGCWC	1 cut(s)	855
BsiSI	CCGG	2 cut(s)	473, 538
BslI	CCNNNNNNNGG	3 cut(s)	464, 493, 1334
BsmAI	GTCTC	3 cut(s)	384, 1134, 1241
BsmBI	CGTCTC	1 cut(s)	384
BsnI	GGCC	3 cut(s)	683, 893, 1074
Bso31I	GGTCTC	2 cut(s)	1134, 1241
Bsp1286I	GDGCHC	2 cut(s)	855, 1282
Bsp143I	GATC	7 cut(s)	10, 75, 220, 338, 517, 1234, 1306
Bsp68I	TCGCGA	1 cut(s)	136
BspACI	CCGC	1 cut(s)	591
BspANI	GGCC	3 cut(s)	683, 893, 1074
BspFNI	CGCG	3 cut(s)	136, 591, 841
BspLI	GGNNCC	4 cut(s)	77, 742, 1036, 1236
BspPI	GGATC	6 cut(s)	70, 83, 525, 1229, 1242, 1301
BspT107I	GGYRCC	1 cut(s)	740
BspTNI	GGTCTC	2 cut(s)	1134, 1241
BsrDI	GCAATG	1 cut(s)	797
BsrFI	RCCGGY	1 cut(s)	537
BsrI	ACTGG	5 cut(s)	114, 506, 1138, 1145, 1193
BssAI	RCCGGY	1 cut(s)	537
BssECI	CCNNGG	5 cut(s)	250, 487, 643, 856, 1362
BssHII	GCGCGC	1 cut(s)	839
BssMI	GATC	7 cut(s)	10, 75, 220, 338, 517, 1234, 1306
BssT1I	CCWWGG	3 cut(s)	487, 643, 856
Bst6I	CTCTTC	2 cut(s)	1082, 1132
BstC8I	GCNNGC	4 cut(s)	841, 876, 1164, 1352
BstDSI	CCRYGG	1 cut(s)	250
BstF5I	GGATG	3 cut(s)	5, 436, 756
BstFNI	CGCG	3 cut(s)	136, 591, 841
BstH2I	RGCGCY	2 cut(s)	875, 1269
BstHHI	GCGC	4 cut(s)	841, 843, 874, 1268
BstKTI	GATC	7 cut(s)	13, 78, 223, 341, 520, 1237, 1309
BstMAI	GTCTC	3 cut(s)	384, 1134, 1241
BstMBI	GATC	7 cut(s)	10, 75, 220, 338, 517, 1234, 1306
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 738
BstNSI	RCATGY	3 cut(s)	166, 695, 1354
BstPAI	GACNNNNGTC	2 cut(s)	978, 1155
BstUI	CGCG	3 cut(s)	136, 591, 841
BstV2I	GAAGAC	2 cut(s)	41, 710
BstX2I	RGATCY	4 cut(s)	75, 517, 1234, 1306
BstYI	RGATCY	4 cut(s)	75, 517, 1234, 1306
BsuI	GTATCC	1 cut(s)	719
BsuRI	GGCC	3 cut(s)	683, 893, 1074
BtgI	CCRYGG	1 cut(s)	250
BtsCI	GGATG	3 cut(s)	5, 436, 756
BtsI	GCAGTG	1 cut(s)	861
BtsIMutI	CAGTG	4 cut(s)	289, 499, 861, 1152
BtuMI	TCGCGA	1 cut(s)	136
Cac8I	GCNNGC	4 cut(s)	841, 876, 1164, 1352
CfoI	GCGC	4 cut(s)	841, 843, 874, 1268
Cfr10I	RCCGGY	1 cut(s)	537
Csp6I	GTAC	2 cut(s)	695, 1376
CspAI	ACCGGT	1 cut(s)	537
CviAII	CATG	8 cut(s)	163, 692, 800, 818, 831, 844, 887, 1351
CviQI	GTAC	2 cut(s)	695, 1376
DpnI	GATC	7 cut(s)	12, 77, 222, 340, 519, 1236, 1308
DpnII	GATC	7 cut(s)	10, 75, 220, 338, 517, 1234, 1306
DraI	TTTAAA	1 cut(s)	1080
Eam1104I	CTCTTC	2 cut(s)	1082, 1132
EarI	CTCTTC	2 cut(s)	1082, 1132
Eco130I	CCWWGG	3 cut(s)	487, 643, 856
Eco24I	GRGCYC	1 cut(s)	1282
Eco31I	GGTCTC	2 cut(s)	1134, 1241
Eco32I	GATATC	2 cut(s)	824, 922
Eco47III	AGCGCT	1 cut(s)	873
Eco57I	CTGAAG	1 cut(s)	213
EcoRI	GAATTC	1 cut(s)	476
EcoRV	GATATC	2 cut(s)	824, 922
EcoT14I	CCWWGG	3 cut(s)	487, 643, 856
EcoT38I	GRGCYC	1 cut(s)	1282
ErhI	CCWWGG	3 cut(s)	487, 643, 856
Esp3I	CGTCTC	1 cut(s)	384
FaeI	CATG	8 cut(s)	166, 695, 803, 821, 834, 847, 890, 1354
FalI	AAGNNNNNCTT	2 cut(s)	840, 872
FatI	CATG	8 cut(s)	162, 691, 799, 817, 830, 843, 886, 1350
FauNDI	CATATG	1 cut(s)	243
FbaI	TGATCA	1 cut(s)	220
FblI	GTMKAC	2 cut(s)	469, 1185
FokI	GGATG	2 cut(s)	423, 763
FriOI	GRGCYC	1 cut(s)	1282
FspBI	CTAG	3 cut(s)	644, 722, 1023
GlaI	GCGC	4 cut(s)	840, 842, 873, 1267
GsuI	CTGGAG	2 cut(s)	408, 806
HaeII	RGCGCY	2 cut(s)	875, 1269
HaeIII	GGCC	3 cut(s)	683, 893, 1074
HapII	CCGG	2 cut(s)	473, 538
HhaI	GCGC	4 cut(s)	841, 843, 874, 1268
Hin1II	CATG	8 cut(s)	166, 695, 803, 821, 834, 847, 890, 1354
Hin6I	GCGC	4 cut(s)	839, 841, 872, 1266
HinP1I	GCGC	4 cut(s)	839, 841, 872, 1266
HincII	GTYRAC	1 cut(s)	772
HindII	GTYRAC	1 cut(s)	772
HindIII	AAGCTT	1 cut(s)	225
HinfI	GANTC	5 cut(s)	103, 293, 310, 1313, 1358
HpaII	CCGG	2 cut(s)	473, 538
HphI	GGTGA	3 cut(s)	447, 476, 575
Hpy166II	GTNNAC	5 cut(s)	470, 507, 772, 1150, 1186
Hpy188I	TCNGA	7 cut(s)	10, 298, 600, 973, 1222, 1318, 1363
Hpy8I	GTNNAC	5 cut(s)	470, 507, 772, 1150, 1186
HpyAV	CCTTC	4 cut(s)	358, 462, 652, 731
HpyCH4V	TGCA	7 cut(s)	359, 404, 530, 732, 886, 913, 1292
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 738
Hsp92II	CATG	8 cut(s)	166, 695, 803, 821, 834, 847, 890, 1354
HspAI	GCGC	4 cut(s)	839, 841, 872, 1266
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	7 cut(s)	10, 75, 220, 338, 517, 1234, 1306
LmnI	GCTCC	3 cut(s)	787, 803, 858
LweI	GCATC	5 cut(s)	14, 741, 741, 922, 981
MaeI	CTAG	3 cut(s)	644, 722, 1023
MaeIII	GTNAC	3 cut(s)	97, 284, 497
MalI	GATC	7 cut(s)	12, 77, 222, 340, 519, 1236, 1308
MboI	GATC	7 cut(s)	10, 75, 220, 338, 517, 1234, 1306
MboII	GAAGA	6 cut(s)	46, 423, 637, 710, 1099, 1149
MflI	RGATCY	4 cut(s)	75, 517, 1234, 1306
MhlI	GDGCHC	2 cut(s)	855, 1282
MmeI	TCCRAC	1 cut(s)	1186
MslI	CAYNNNNRTG	3 cut(s)	318, 848, 1297
MspI	CCGG	2 cut(s)	473, 538
MvnI	CGCG	3 cut(s)	136, 591, 841
MwoI	GCNNNNNNNGC	2 cut(s)	410, 738
NdeI	CATATG	1 cut(s)	243
NdeII	GATC	7 cut(s)	10, 75, 220, 338, 517, 1234, 1306
NlaIII	CATG	8 cut(s)	166, 695, 803, 821, 834, 847, 890, 1354
NlaIV	GGNNCC	4 cut(s)	77, 742, 1036, 1236
NmuCI	GTSAC	3 cut(s)	97, 284, 497
NruI	TCGCGA	1 cut(s)	136
NspI	RCATGY	3 cut(s)	166, 695, 1354
PaeI	GCATGC	1 cut(s)	1354
PauI	GCGCGC	1 cut(s)	839
PfeI	GAWTC	5 cut(s)	103, 293, 310, 1313, 1358
PinAI	ACCGGT	1 cut(s)	537
PshAI	GACNNNNGTC	2 cut(s)	978, 1155
PshBI	ATTAAT	1 cut(s)	603
PspN4I	GGNNCC	4 cut(s)	77, 742, 1036, 1236
PsuI	RGATCY	4 cut(s)	75, 517, 1234, 1306
PteI	GCGCGC	1 cut(s)	839
RruI	TCGCGA	1 cut(s)	136
RsaI	GTAC	2 cut(s)	696, 1377
RsaNI	GTAC	2 cut(s)	695, 1376
RseI	CAYNNNNRTG	3 cut(s)	318, 848, 1297
Sau3AI	GATC	7 cut(s)	10, 75, 220, 338, 517, 1234, 1306
SduI	GDGCHC	2 cut(s)	855, 1282
SfaNI	GCATC	5 cut(s)	14, 741, 741, 922, 981
SmiMI	CAYNNNNRTG	3 cut(s)	318, 848, 1297
SmlI	CTYRAG	1 cut(s)	1193
SmoI	CTYRAG	1 cut(s)	1193
SphI	GCATGC	1 cut(s)	1354
SsiI	CCGC	1 cut(s)	591
SspMI	CTAG	3 cut(s)	644, 722, 1023
StyI	CCWWGG	3 cut(s)	487, 643, 856
TaqI	TCGA	7 cut(s)	337, 735, 897, 916, 929, 1259, 1381
TatI	WGTACW	1 cut(s)	1375
TfiI	GAWTC	5 cut(s)	103, 293, 310, 1313, 1358
TscAI	CASTG	4 cut(s)	289, 506, 868, 1152
TseFI	GTSAC	3 cut(s)	97, 284, 497
Tsp45I	GTSAC	3 cut(s)	97, 284, 497
TspDTI	ATGAA	3 cut(s)	302, 788, 860
TspRI	CASTG	4 cut(s)	289, 506, 868, 1152
VspI	ATTAAT	1 cut(s)	603
XapI	RAATTY	6 cut(s)	180, 278, 476, 524, 662, 1177
XceI	RCATGY	3 cut(s)	166, 695, 1354
XcmI	CCANNNNNNNNNTGG	1 cut(s)	248
XmaJI	CCTAGG	1 cut(s)	643
XmiI	GTMKAC	2 cut(s)	469, 1185
XspI	CTAG	3 cut(s)	644, 722, 1023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.