Rh4BG342400

Wall-associated receptor kinase C-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
N/A
Physical Location & Seq
Forward (+)
50564245 .. 50574523
10279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG342400.1

Sequence Viewer

Length: 501 bp
ATGTACAAGCCTAGCTGCTTTGAGCCAAACAGAAGTACTAGTACTTCAGTTTTGGCGGTGCCTGAGGTACTGTTTGATAATGTATCTGACACACAGTGGTGGTGGGTTTTGGATTATGCCACTAACAATCGGTGGGCTAGTGAAGAGGTGTTGAGTAGAGGGTTTATGCTGAAATGGCTTGCTAGCAACTGCAGCCGGTGCAAGCTCAGCGGAGGGAAGTGTGGCTTCGATTTCAAGACATCTCGTTTTAGCTGTTTGTGCCCAGATAGGCCTCATTCTGTCAGCTGTGGAGTTAAAGAAACCCAATGCTCAGAGAGAGAAAATAATGGAGCTCTCTCTTCATTTCAGAATCGTTTCTTCCCTAGTTCTTTTGAGATTGGTTGGCTTCTTTCTTCATCTCTACAACATAGTCTGGTTGAAGTCCGTGAGGCTCCGAAGGAAGCTCCAAATGCAAGGCATCAAAGGCCCTACAACTTCTTTACTATATGGGAATCTCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

166

Amino Acids

19.08

Weight (kDa)

8.13

Isoelectric Point (pI)

50.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WAK_assoc PF14380 43 - 90 1.2e-12 Wall-associated receptor kinase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 58
AciI CCGC 2 cut(s) 56, 210
AcuI CTGAAG 1 cut(s) 30
AdeI CACNNNGTG 1 cut(s) 96
AfaI GTAC 4 cut(s) 5, 37, 43, 69
AgsI TTSAA 2 cut(s) 235, 419
AhlI ACTAGT 1 cut(s) 38
AleI CACNNNNGTG 1 cut(s) 97
AluBI AGCT 6 cut(s) 15, 205, 252, 285, 332, 443
AluI AGCT 6 cut(s) 15, 205, 252, 285, 332, 443
Alw21I GWGCWC 1 cut(s) 334
AoxI GGCC 2 cut(s) 269, 464
ApeKI GCWGC 2 cut(s) 15, 192
Asp700I GAANNNNTTC 1 cut(s) 353
AspS9I GGNCC 1 cut(s) 465
AsuNHI GCTAGC 1 cut(s) 182
AxyI CCTNAGG 1 cut(s) 63
BaeGI GKGCMC 1 cut(s) 263
BanI GGYRCC 1 cut(s) 58
BanII GRGCYC 1 cut(s) 334
BarI GAAGNNNNNNTAC 4 cut(s) 25, 28, 57, 60
Bbv12I GWGCWC 1 cut(s) 334
BbvI GCAGC 2 cut(s) 2, 204
BcuI ACTAGT 1 cut(s) 38
BfaI CTAG 5 cut(s) 12, 39, 138, 183, 363
BfmI CTRYAG 1 cut(s) 190
BisI GCNGC 2 cut(s) 16, 193
BlpI GCTNAGC 1 cut(s) 206
BlsI GCNGC 2 cut(s) 17, 194
BmcAI AGTACT 2 cut(s) 37, 43
BmgT120I GGNCC 1 cut(s) 465
BmiI GGNNCC 2 cut(s) 60, 432
BmsI GCATC 1 cut(s) 466
BmtI GCTAGC 1 cut(s) 186
Bpu1102I GCTNAGC 1 cut(s) 206
Bse118I RCCGGY 1 cut(s) 195
Bse21I CCTNAGG 1 cut(s) 63
BseMII CTCAG 3 cut(s) 54, 220, 324
BseSI GKGCMC 1 cut(s) 263
BseXI GCAGC 2 cut(s) 2, 204
BshFI GGCC 2 cut(s) 271, 466
BshNI GGYRCC 1 cut(s) 58
BsiHKAI GWGCWC 1 cut(s) 334
BsiSI CCGG 1 cut(s) 196
BsnI GGCC 2 cut(s) 271, 466
Bsp1286I GDGCHC 2 cut(s) 263, 334
Bsp1407I TGTACA 1 cut(s) 3
Bsp1720I GCTNAGC 1 cut(s) 206
BspACI CCGC 2 cut(s) 56, 210
BspANI GGCC 2 cut(s) 271, 466
BspCNI CTCAG 3 cut(s) 55, 219, 323
BspLI GGNNCC 2 cut(s) 60, 432
BspMAI CTGCAG 1 cut(s) 194
BspOI GCTAGC 1 cut(s) 186
BspT107I GGYRCC 1 cut(s) 58
BsrFI RCCGGY 1 cut(s) 195
BsrGI TGTACA 1 cut(s) 3
BssAI RCCGGY 1 cut(s) 195
Bst4CI ACNGT 2 cut(s) 72, 96
Bst6I CTCTTC 2 cut(s) 138, 343
BstAPI GCANNNNNTGC 1 cut(s) 198
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 3 cut(s) 180, 184, 203
BstDEI CTNAG 3 cut(s) 63, 206, 310
BstMWI GCNNNNNNNGC 7 cut(s) 175, 192, 198, 207, 258, 449, 463
BstSFI CTRYAG 1 cut(s) 190
BstSLI GKGCMC 1 cut(s) 263
BstV1I GCAGC 2 cut(s) 2, 204
Bsu36I CCTNAGG 1 cut(s) 63
BsuRI GGCC 2 cut(s) 271, 466
BtsIMutI CAGTG 1 cut(s) 101
Cac8I GCNNGC 3 cut(s) 180, 184, 203
Cfr10I RCCGGY 1 cut(s) 195
Cfr13I GGNCC 1 cut(s) 465
Csp6I GTAC 4 cut(s) 4, 36, 42, 68
CviQI GTAC 4 cut(s) 4, 36, 42, 68
DdeI CTNAG 3 cut(s) 63, 206, 310
DraIII CACNNNGTG 1 cut(s) 96
Eam1104I CTCTTC 2 cut(s) 138, 343
EarI CTCTTC 2 cut(s) 138, 343
Ecl136II GAGCTC 1 cut(s) 332
Eco147I AGGCCT 1 cut(s) 271
Eco24I GRGCYC 1 cut(s) 334
Eco53kI GAGCTC 1 cut(s) 332
Eco57I CTGAAG 1 cut(s) 30
Eco81I CCTNAGG 1 cut(s) 63
EcoICRI GAGCTC 1 cut(s) 332
EcoO109I RGGNCCY 1 cut(s) 465
EcoT38I GRGCYC 1 cut(s) 334
FaiI YATR 5 cut(s) 117, 167, 408, 485, 487
FalI AAGNNNNNCTT 2 cut(s) 209, 241
Fnu4HI GCNGC 2 cut(s) 16, 193
FriOI GRGCYC 1 cut(s) 334
Fsp4HI GCNGC 2 cut(s) 16, 193
FspBI CTAG 5 cut(s) 12, 39, 138, 183, 363
GluI GCNGC 2 cut(s) 16, 193
HaeIII GGCC 2 cut(s) 271, 466
HapII CCGG 1 cut(s) 196
HinfI GANTC 2 cut(s) 349, 491
HpaII CCGG 1 cut(s) 196
Hpy188I TCNGA 4 cut(s) 88, 313, 348, 435
Hpy188III TCNNGA 1 cut(s) 235
HpyAV CCTTC 1 cut(s) 430
HpyCH4III ACNGT 2 cut(s) 72, 96
HpyCH4V TGCA 3 cut(s) 192, 201, 452
HpyF10VI GCNNNNNNNGC 7 cut(s) 175, 192, 198, 207, 258, 449, 463
HpyF3I CTNAG 3 cut(s) 63, 206, 310
LmnI GCTCC 3 cut(s) 329, 436, 448
LpnPI CCDG 4 cut(s) 75, 209, 276, 398
Lsp1109I GCAGC 2 cut(s) 2, 204
LweI GCATC 1 cut(s) 466
MaeI CTAG 5 cut(s) 12, 39, 138, 183, 363
MboII GAAGA 4 cut(s) 155, 330, 349, 384
MhlI GDGCHC 2 cut(s) 263, 334
MnlI CCTC 6 cut(s) 58, 139, 152, 206, 282, 421
MroXI GAANNNNTTC 1 cut(s) 353
MseI TTAA 1 cut(s) 294
MslI CAYNNNNRTG 1 cut(s) 97
MspA1I CMGCKG 2 cut(s) 210, 285
MspI CCGG 1 cut(s) 196
MwoI GCNNNNNNNGC 7 cut(s) 175, 192, 198, 207, 258, 449, 463
NheI GCTAGC 1 cut(s) 182
NlaIV GGNNCC 2 cut(s) 60, 432
OliI CACNNNNGTG 1 cut(s) 97
PceI AGGCCT 1 cut(s) 271
PdmI GAANNNNTTC 1 cut(s) 353
PfeI GAWTC 2 cut(s) 349, 491
PkrI GCNGC 2 cut(s) 17, 194
Psp124BI GAGCTC 1 cut(s) 334
PspN4I GGNNCC 2 cut(s) 60, 432
PspPI GGNCC 1 cut(s) 465
PstI CTGCAG 1 cut(s) 194
PvuII CAGCTG 1 cut(s) 285
RsaI GTAC 4 cut(s) 5, 37, 43, 69
RsaNI GTAC 4 cut(s) 4, 36, 42, 68
RseI CAYNNNNRTG 1 cut(s) 97
SacI GAGCTC 1 cut(s) 334
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 2 cut(s) 16, 193
Sau96I GGNCC 1 cut(s) 465
ScaI AGTACT 2 cut(s) 37, 43
SduI GDGCHC 2 cut(s) 263, 334
SetI ASST 8 cut(s) 17, 69, 150, 207, 254, 287, 334, 445
SfaNI GCATC 1 cut(s) 466
SfcI CTRYAG 1 cut(s) 190
SmiMI CAYNNNNRTG 1 cut(s) 97
SpeI ACTAGT 1 cut(s) 38
SseBI AGGCCT 1 cut(s) 271
SsiI CCGC 2 cut(s) 56, 210
SspMI CTAG 5 cut(s) 12, 39, 138, 183, 363
SstI GAGCTC 1 cut(s) 334
StuI AGGCCT 1 cut(s) 271
TaaI ACNGT 2 cut(s) 72, 96
TaqI TCGA 1 cut(s) 228
TatI WGTACW 3 cut(s) 3, 35, 41
TfiI GAWTC 2 cut(s) 349, 491
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TscAI CASTG 1 cut(s) 101
TseI GCWGC 2 cut(s) 15, 192
TspDTI ATGAA 2 cut(s) 330, 384
TspGWI ACGGA 1 cut(s) 413
TspRI CASTG 1 cut(s) 101
XmnI GAANNNNTTC 1 cut(s) 353
XspI CTAG 5 cut(s) 12, 39, 138, 183, 363
ZrmI AGTACT 2 cut(s) 37, 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.