Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

54382136 .. 54383271

Gene Structure 1136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG390900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGATCAGCTGGCTAGTAGTGTGAAATCAGAACTCGTGACTAGCCCTAGTAAGCGTCCAATTTGCATGATCGAAGTCGATGCTTTGGTTAACAAGTGTGTCAAGAGAAGGAGGAGGGATTCATCCACGGCTGTTTCACCAACAGAAGAAGCAGTGGCTTTTCAAGAGGTGTATCCAAGTACAGAGGAGTTGCAAGGCATCATCACAATGGGAGATGGGAAGCAAGGATTGGGAGAGTGTTTGGAAACAAGTATCTGTATCTCGGCACTTACGGTACCCAAGAAGAGGCAGCTCACGCCTATGATATTGCAGCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006109 GO:0006110 GO:0006140 GO:0006355 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019220 GO:0019222 GO:0019432 GO:0030808 GO:0030811 GO:0031323 GO:0031326 GO:0031329 GO:0034285 GO:0042221 GO:0042325 GO:0043467 GO:0043470 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0048518 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051193 GO:0051196 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900371 GO:1900542 GO:1901363 GO:1901576 GO:1901700 GO:1901957 GO:1901959 GO:1903506 GO:1903578 GO:2000112 GO:2001141 GO:2001169

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

105

Amino Acids

11.53

Weight (kDa)

7.63

Isoelectric Point (pI)

91.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	274
AccB1I	GGYRCC	1 cut(s)	274
AclWI	GGATC	1 cut(s)	12
AfaI	GTAC	2 cut(s)	181, 276
AfiI	CCNNNNNNNGG	1 cut(s)	285
AgsI	TTSAA	1 cut(s)	164
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AluBI	AGCT	2 cut(s)	10, 292
AluI	AGCT	2 cut(s)	10, 292
AlwI	GGATC	1 cut(s)	12
ApeKI	GCWGC	2 cut(s)	289, 310
Asp718I	GGTACC	1 cut(s)	274
AsuHPI	GGTGA	1 cut(s)	129
BanI	GGYRCC	1 cut(s)	274
BauI	CACGAG	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	301
BccI	CCATC	1 cut(s)	209
BceAI	ACGGC	1 cut(s)	144
BcgI	CGANNNNNNTGC	2 cut(s)	62, 96
BciVI	GTATCC	1 cut(s)	183
BfaI	CTAG	3 cut(s)	15, 42, 48
BfuI	GTATCC	1 cut(s)	183
BisI	GCNGC	2 cut(s)	290, 311
BlsI	GCNGC	2 cut(s)	291, 312
BmiI	GGNNCC	1 cut(s)	276
BmsI	GCATC	2 cut(s)	70, 207
BsaJI	CCNNGG	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	1 cut(s)	122
BseLI	CCNNNNNNNGG	1 cut(s)	285
BseRI	GAGGAG	2 cut(s)	127, 200
BseXI	GCAGC	1 cut(s)	301
BshNI	GGYRCC	1 cut(s)	274
BslI	CCNNNNNNNGG	1 cut(s)	285
Bsp143I	GATC	2 cut(s)	4, 69
BspLI	GGNNCC	1 cut(s)	276
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	274
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	2 cut(s)	4, 69
BssSI	CACGAG	1 cut(s)	35
Bst2BI	CACGAG	1 cut(s)	35
Bst4CI	ACNGT	1 cut(s)	274
Bst6I	CTCTTC	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	12
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	122
BstKTI	GATC	2 cut(s)	7, 72
BstMBI	GATC	2 cut(s)	4, 69
BstMWI	GCNNNNNNNGC	1 cut(s)	295
BstV1I	GCAGC	1 cut(s)	301
BsuI	GTATCC	1 cut(s)	183
BtgI	CCRYGG	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	122
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	1 cut(s)	159
Cac8I	GCNNGC	1 cut(s)	12
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	2 cut(s)	180, 275
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	6 cut(s)	10, 14, 45, 131, 158, 292
CviKI_1	RGCY	6 cut(s)	10, 14, 45, 131, 158, 292
CviQI	GTAC	2 cut(s)	180, 275
DpnI	GATC	2 cut(s)	6, 71
DpnII	GATC	2 cut(s)	4, 69
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
FaeI	CATG	1 cut(s)	70
FaiI	YATR	2 cut(s)	68, 302
FatI	CATG	1 cut(s)	66
Fnu4HI	GCNGC	2 cut(s)	290, 311
FokI	GGATG	1 cut(s)	109
Fsp4HI	GCNGC	2 cut(s)	290, 311
FspBI	CTAG	3 cut(s)	15, 42, 48
GluI	GCNGC	2 cut(s)	290, 311
HgaI	GACGC	1 cut(s)	44
Hin1II	CATG	1 cut(s)	70
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	1 cut(s)	119
HpaI	GTTAAC	1 cut(s)	91
HphI	GGTGA	1 cut(s)	129
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	1 cut(s)	31
Hpy188III	TCNNGA	3 cut(s)	37, 103, 164
Hpy8I	GTNNAC	1 cut(s)	91
HpyAV	CCTTC	1 cut(s)	102
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4V	TGCA	3 cut(s)	66, 193, 310
HpyF10VI	GCNNNNNNNGC	1 cut(s)	295
Hsp92II	CATG	1 cut(s)	70
KpnI	GGTACC	1 cut(s)	278
KspAI	GTTAAC	1 cut(s)	91
Kzo9I	GATC	2 cut(s)	4, 69
Lsp1109I	GCAGC	1 cut(s)	301
LweI	GCATC	2 cut(s)	70, 207
MaeI	CTAG	3 cut(s)	15, 42, 48
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	2 cut(s)	6, 71
MboI	GATC	2 cut(s)	4, 69
MboII	GAAGA	2 cut(s)	158, 295
MluCI	AATT	1 cut(s)	60
MnlI	CCTC	5 cut(s)	105, 108, 160, 178, 279
MseI	TTAA	1 cut(s)	90
MslI	CAYNNNNRTG	2 cut(s)	206, 299
MspA1I	CMGCKG	1 cut(s)	10
MwoI	GCNNNNNNNGC	1 cut(s)	295
NdeII	GATC	2 cut(s)	4, 69
NlaIII	CATG	1 cut(s)	70
NlaIV	GGNNCC	1 cut(s)	276
NmeAIII	GCCGAG	1 cut(s)	242
NmuCI	GTSAC	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	2 cut(s)	291, 312
PspN4I	GGNNCC	1 cut(s)	276
PvuII	CAGCTG	1 cut(s)	10
RsaI	GTAC	2 cut(s)	181, 276
RsaNI	GTAC	2 cut(s)	180, 275
RseI	CAYNNNNRTG	2 cut(s)	206, 299
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	2 cut(s)	290, 311
Sau3AI	GATC	2 cut(s)	4, 69
SetI	ASST	3 cut(s)	12, 171, 294
SfaNI	GCATC	2 cut(s)	70, 207
SmiMI	CAYNNNNRTG	2 cut(s)	206, 299
Sse9I	AATT	1 cut(s)	60
SspMI	CTAG	3 cut(s)	15, 42, 48
TaaI	ACNGT	1 cut(s)	274
TaqI	TCGA	2 cut(s)	72, 78
TasI	AATT	1 cut(s)	60
TatI	WGTACW	1 cut(s)	179
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TscAI	CASTG	1 cut(s)	159
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	2 cut(s)	289, 310
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	1 cut(s)	111
TspRI	CASTG	1 cut(s)	159
XspI	CTAG	3 cut(s)	15, 42, 48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.