Rh4BG415800

Leucine-rich repeats, typical (most populated) subfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
N/A
Physical Location & Seq
Reverse (-)
56368431 .. 56368781
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG415800.1

Sequence Viewer

Length: 351 bp
ATGTGCTTACTAGAGTTGGAATGGAGTCTCTGCTTTTTGTCAGTTCCTTTCACATGCAAATCATGGTACACTACAAGTCTCAATCCCTTGAGCTTTCAAAATCTCTTATTTCTAGATTTTATGCCTTCTCCTTTGTTCACAGTTGCTAATAAGCCTCTTCCTCGGAGTTTCGGTCCCTTTTATGATAAGTTCATAGACCAATATGGAATTGATAAGACTCGTTTCTCGATCACTGCGTTTGTGAAATTTGCAGTTAATCGTAGCAATGGACTAGTTACTCAACTTAAGCTACCGGAATTTTGTACCCAAGAAGGATTGATGTTTGTTTCGGATGCATGCCCTTTCCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

116

Amino Acids

13.33

Weight (kDa)

6.13

Isoelectric Point (pI)

43.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 245, 296
AfaI GTAC 2 cut(s) 68, 304
AflII CTTAAG 1 cut(s) 284
AgsI TTSAA 1 cut(s) 98
AhlI ACTAGT 1 cut(s) 271
AluBI AGCT 2 cut(s) 93, 289
AluI AGCT 2 cut(s) 93, 289
Alw26I GTCTC 2 cut(s) 32, 83
ApoI RAATTY 2 cut(s) 245, 296
AspS9I GGNCC 1 cut(s) 173
AvaII GGWCC 1 cut(s) 173
BcoDI GTCTC 2 cut(s) 32, 83
BcuI ACTAGT 1 cut(s) 271
BfaI CTAG 3 cut(s) 11, 113, 272
BfrI CTTAAG 1 cut(s) 284
Bme18I GGWCC 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 175
BmsI GCATC 1 cut(s) 322
BpuEI CTTGAG 1 cut(s) 109
BsaJI CCNNGG 1 cut(s) 161
BsaWI WCCGGW 1 cut(s) 292
BsaXI ACNNNNNCTCC 2 cut(s) 157, 187
Bse3DI GCAATG 1 cut(s) 271
BseDI CCNNGG 1 cut(s) 161
BseGI GGATG 1 cut(s) 337
BseMI GCAATG 1 cut(s) 271
BsiSI CCGG 1 cut(s) 293
BslFI GGGAC 1 cut(s) 159
BsmAI GTCTC 2 cut(s) 32, 83
BsmFI GGGAC 1 cut(s) 159
Bsp143I GATC 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 175
BspTI CTTAAG 1 cut(s) 284
BsrDI GCAATG 1 cut(s) 271
BssECI CCNNGG 1 cut(s) 161
BssMI GATC 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 142
Bst6I CTCTTC 1 cut(s) 162
BstAFI CTTAAG 1 cut(s) 284
BstC8I GCNNGC 1 cut(s) 337
BstF5I GGATG 1 cut(s) 337
BstKTI GATC 1 cut(s) 231
BstMAI GTCTC 2 cut(s) 32, 83
BstMBI GATC 1 cut(s) 228
BstNSI RCATGY 2 cut(s) 57, 339
BtsCI GGATG 1 cut(s) 337
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 1 cut(s) 231
Cac8I GCNNGC 1 cut(s) 337
Cfr13I GGNCC 1 cut(s) 173
Csp6I GTAC 2 cut(s) 67, 303
CviAII CATG 3 cut(s) 54, 63, 336
CviJI RGCY 3 cut(s) 93, 154, 289
CviKI_1 RGCY 3 cut(s) 93, 154, 289
CviQI GTAC 2 cut(s) 67, 303
DpnI GATC 1 cut(s) 230
DpnII GATC 1 cut(s) 228
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 173
EcoT22I ATGCAT 1 cut(s) 337
FaeI CATG 3 cut(s) 57, 66, 339
FaiI YATR 8 cut(s) 55, 64, 122, 183, 194, 204, 337, 349
FaqI GGGAC 1 cut(s) 159
FatI CATG 3 cut(s) 53, 62, 335
FokI GGATG 1 cut(s) 344
FspBI CTAG 3 cut(s) 11, 113, 272
HapII CCGG 1 cut(s) 293
Hin1II CATG 3 cut(s) 57, 66, 339
HinfI GANTC 2 cut(s) 25, 217
HpaII CCGG 1 cut(s) 293
Hpy166II GTNNAC 2 cut(s) 69, 138
Hpy188I TCNGA 2 cut(s) 165, 331
Hpy188III TCNNGA 2 cut(s) 113, 226
Hpy8I GTNNAC 2 cut(s) 69, 138
HpyAV CCTTC 2 cut(s) 135, 305
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4V TGCA 3 cut(s) 57, 251, 335
Hsp92II CATG 3 cut(s) 57, 66, 339
Kzo9I GATC 1 cut(s) 228
LpnPI CCDG 1 cut(s) 306
LweI GCATC 1 cut(s) 322
MaeI CTAG 3 cut(s) 11, 113, 272
MaeIII GTNAC 1 cut(s) 274
MalI GATC 1 cut(s) 230
MboI GATC 1 cut(s) 228
MboII GAAGA 1 cut(s) 149
MluCI AATT 3 cut(s) 207, 245, 296
MlyI GAGTC 2 cut(s) 34, 211
MnlI CCTC 2 cut(s) 165, 171
Mph1103I ATGCAT 1 cut(s) 337
MseI TTAA 2 cut(s) 255, 285
MspCI CTTAAG 1 cut(s) 284
MspI CCGG 1 cut(s) 293
NdeII GATC 1 cut(s) 228
NlaIII CATG 3 cut(s) 57, 66, 339
NlaIV GGNNCC 1 cut(s) 175
NsiI ATGCAT 1 cut(s) 337
NspI RCATGY 2 cut(s) 57, 339
PaeI GCATGC 1 cut(s) 339
PcsI WCGNNNNNNNCGW 1 cut(s) 233
PleI GAGTC 2 cut(s) 33, 211
PpsI GAGTC 2 cut(s) 33, 211
PspN4I GGNNCC 1 cut(s) 175
PspPI GGNCC 1 cut(s) 173
RsaI GTAC 2 cut(s) 68, 304
RsaNI GTAC 2 cut(s) 67, 303
SaqAI TTAA 2 cut(s) 255, 285
Sau3AI GATC 1 cut(s) 228
Sau96I GGNCC 1 cut(s) 173
SchI GAGTC 2 cut(s) 34, 211
SetI ASST 2 cut(s) 95, 291
SfaNI GCATC 1 cut(s) 322
SinI GGWCC 1 cut(s) 173
SmlI CTYRAG 2 cut(s) 88, 284
SmoI CTYRAG 2 cut(s) 88, 284
SpeI ACTAGT 1 cut(s) 271
SphI GCATGC 1 cut(s) 339
Sse9I AATT 3 cut(s) 207, 245, 296
SspMI CTAG 3 cut(s) 11, 113, 272
TaaI ACNGT 1 cut(s) 142
TaqI TCGA 1 cut(s) 227
TaqII GACCGA 1 cut(s) 161
TasI AATT 3 cut(s) 207, 245, 296
Tru1I TTAA 2 cut(s) 255, 285
Tru9I TTAA 2 cut(s) 255, 285
TscAI CASTG 1 cut(s) 238
TspDTI ATGAA 1 cut(s) 181
TspRI CASTG 1 cut(s) 238
Vha464I CTTAAG 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 173
XapI RAATTY 2 cut(s) 245, 296
XbaI TCTAGA 1 cut(s) 112
XceI RCATGY 2 cut(s) 57, 339
XspI CTAG 3 cut(s) 11, 113, 272
Zsp2I ATGCAT 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.