Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

55366561 .. 55370317

Gene Structure 3757 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG294300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGAAACAGGGACACCCTTGCAACTCAAAGTTCCATTGAAAACCATTCAATATGATGTCAATGAAAAGAGCCAGAACGCTTTCTTCCTATGTGCATGCCTTCTGCTGTTAACTGCTGACTCAGCCCTTCTTCTTCTGCGAAACCATAGACGGCTTCACTTTTCTCACTTCAATCCAACACTCTTAGTGAAAACCCAATTCCCAAAATCATCAGAGCACACCAAAGGAGATAATATCATGGGCTGCTTCAGTTGTTGTGTACAAGATGATACCGATACAGCTGCGGATCATGGACCATATGTACCGCATGGCTCAGCAGGCAATGGCTACCATCCCAGAGAAGCTGCGCAGAGGGATACTCAGATTGTAAATATACAACCAATTGCTGTTGCTGCCATTCCAGTAGATGAATTGAAAGATCTGACTGATAATTTTGGCACAAAGGCCTTAATTGGTGAGGGTTCATATGGAAGAGTATATTATGGTGTTCTTAAGAGTGGGCCTGCTGCTGCTATTAAGAAGCTAGATGCCAGTAAACAACCACACCAAGAATTTTTGTCACAGGCTACACCTAAACTGAGTGAGGATAAGGTGAAGCAGTGCGCTGATGCTAGACTCAATGGTGACTACCCTCCCAAGGCAGTTGCAAAGTTGGCTGCTGTTGCTGCCTTGTGCGTCCAATATGAAGCTGATTTTCGGCCAAACATGAGCATTGTGGTCAAGGCTCTACAGCCTCTATTGAATGCTCGGTCTGGTCCTGCCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

255

Amino Acids

27.71

Weight (kDa)

8.11

Isoelectric Point (pI)

26.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	348
AciI	CCGC	2 cut(s)	284, 305
AclWI	GGATC	1 cut(s)	294
AcoI	YGGCCR	1 cut(s)	698
AcsI	RAATTY	1 cut(s)	551
AcuI	CTGAAG	1 cut(s)	232
AfaI	GTAC	2 cut(s)	261, 303
AfiI	CCNNNNNNNGG	1 cut(s)	637
AflII	CTTAAG	1 cut(s)	491
AgsI	TTSAA	5 cut(s)	40, 50, 172, 415, 742
AluBI	AGCT	4 cut(s)	281, 344, 523, 689
AluI	AGCT	4 cut(s)	281, 344, 523, 689
Alw21I	GWGCWC	1 cut(s)	219
AlwI	GGATC	1 cut(s)	294
AoxI	GGCC	3 cut(s)	444, 500, 698
ApeKI	GCWGC	8 cut(s)	243, 281, 344, 392, 506, 509, 656, 665
ApoI	RAATTY	1 cut(s)	551
Asp700I	GAANNNNTTC	1 cut(s)	80
AspLEI	GCGC	2 cut(s)	349, 605
AspS9I	GGNCC	3 cut(s)	293, 500, 755
AsuHPI	GGTGA	3 cut(s)	467, 604, 635
AvaII	GGWCC	2 cut(s)	293, 755
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	8 cut(s)	230, 268, 331, 379, 493, 496, 643, 652
BccI	CCATC	1 cut(s)	339
BceAI	ACGGC	1 cut(s)	167
BcgI	CGANNNNNNTGC	2 cut(s)	263, 297
BciVI	GTATCC	1 cut(s)	349
BfaI	CTAG	2 cut(s)	524, 612
BfmI	CTRYAG	1 cut(s)	728
BfrI	CTTAAG	1 cut(s)	491
BfuI	GTATCC	1 cut(s)	349
BglII	AGATCT	1 cut(s)	418
BisI	GCNGC	8 cut(s)	244, 282, 345, 393, 507, 510, 657, 666
BlpI	GCTNAGC	1 cut(s)	313
BlsI	GCNGC	8 cut(s)	245, 283, 346, 394, 508, 511, 658, 667
Bme18I	GGWCC	2 cut(s)	293, 755
BmgT120I	GGNCC	3 cut(s)	293, 500, 755
BmsI	GCATC	2 cut(s)	517, 598
BplI	GAGNNNNNCTC	2 cut(s)	343, 375
Bpu1102I	GCTNAGC	1 cut(s)	313
BsaJI	CCNNGG	1 cut(s)	636
Bsc4I	CCNNNNNNNGG	1 cut(s)	637
Bse1I	ACTGG	2 cut(s)	401, 531
Bse3DI	GCAATG	1 cut(s)	328
BseDI	CCNNGG	1 cut(s)	636
BseGI	GGATG	1 cut(s)	331
BseLI	CCNNNNNNNGG	1 cut(s)	637
BseMI	GCAATG	1 cut(s)	328
BseMII	CTCAG	4 cut(s)	135, 327, 374, 569
BseNI	ACTGG	2 cut(s)	401, 531
BseXI	GCAGC	8 cut(s)	230, 268, 331, 379, 493, 496, 643, 652
BshFI	GGCC	3 cut(s)	446, 502, 700
BsiHKAI	GWGCWC	1 cut(s)	219
BslFI	GGGAC	1 cut(s)	25
BslI	CCNNNNNNNGG	1 cut(s)	637
BsmFI	GGGAC	1 cut(s)	25
BsmI	GAATGC	1 cut(s)	748
BsnI	GGCC	3 cut(s)	446, 502, 700
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp1407I	TGTACA	1 cut(s)	259
Bsp143I	GATC	2 cut(s)	286, 418
Bsp1720I	GCTNAGC	1 cut(s)	313
BspACI	CCGC	2 cut(s)	284, 305
BspANI	GGCC	3 cut(s)	446, 502, 700
BspCNI	CTCAG	4 cut(s)	134, 326, 373, 570
BspPI	GGATC	1 cut(s)	294
BspTI	CTTAAG	1 cut(s)	491
BsrDI	GCAATG	1 cut(s)	328
BsrGI	TGTACA	1 cut(s)	259
BsrI	ACTGG	2 cut(s)	401, 531
BssECI	CCNNGG	1 cut(s)	636
BssMI	GATC	2 cut(s)	286, 418
BssT1I	CCWWGG	1 cut(s)	636
Bst6I	CTCTTC	1 cut(s)	466
BstAFI	CTTAAG	1 cut(s)	491
BstAUI	TGTACA	1 cut(s)	259
BstC8I	GCNNGC	3 cut(s)	97, 319, 504
BstDEI	CTNAG	5 cut(s)	121, 184, 313, 360, 578
BstF5I	GGATG	1 cut(s)	331
BstHHI	GCGC	2 cut(s)	349, 605
BstKTI	GATC	2 cut(s)	289, 421
BstMBI	GATC	2 cut(s)	286, 418
BstMWI	GCNNNNNNNGC	6 cut(s)	122, 318, 392, 653, 662, 665
BstNSI	RCATGY	1 cut(s)	99
BstSFI	CTRYAG	1 cut(s)	728
BstV1I	GCAGC	8 cut(s)	230, 268, 331, 379, 493, 496, 643, 652
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
BsuI	GTATCC	1 cut(s)	349
BsuRI	GGCC	3 cut(s)	446, 502, 700
BtsCI	GGATG	1 cut(s)	331
BtsI	GCAGTG	1 cut(s)	605
BtsIMutI	CAGTG	1 cut(s)	605
Cac8I	GCNNGC	3 cut(s)	97, 319, 504
CfoI	GCGC	2 cut(s)	349, 605
Cfr13I	GGNCC	3 cut(s)	293, 500, 755
CseI	GACGC	1 cut(s)	664
Csp6I	GTAC	2 cut(s)	260, 302
CviAII	CATG	5 cut(s)	96, 238, 290, 308, 706
CviQI	GTAC	2 cut(s)	260, 302
DdeI	CTNAG	5 cut(s)	121, 184, 313, 360, 578
DpnI	GATC	2 cut(s)	288, 420
DpnII	GATC	2 cut(s)	286, 418
EaeI	YGGCCR	1 cut(s)	698
Eam1104I	CTCTTC	1 cut(s)	466
EarI	CTCTTC	1 cut(s)	466
Eco130I	CCWWGG	1 cut(s)	636
Eco147I	AGGCCT	1 cut(s)	446
Eco47I	GGWCC	2 cut(s)	293, 755
Eco57I	CTGAAG	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	636
ErhI	CCWWGG	1 cut(s)	636
FaeI	CATG	5 cut(s)	99, 241, 293, 311, 709
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	5 cut(s)	95, 237, 289, 307, 705
FauNDI	CATATG	2 cut(s)	298, 466
Fnu4HI	GCNGC	8 cut(s)	244, 282, 345, 393, 507, 510, 657, 666
FokI	GGATG	1 cut(s)	318
Fsp4HI	GCNGC	8 cut(s)	244, 282, 345, 393, 507, 510, 657, 666
FspBI	CTAG	2 cut(s)	524, 612
FspI	TGCGCA	1 cut(s)	348
GlaI	GCGC	2 cut(s)	348, 604
GluI	GCNGC	8 cut(s)	244, 282, 345, 393, 507, 510, 657, 666
HaeIII	GGCC	3 cut(s)	446, 502, 700
HgaI	GACGC	1 cut(s)	664
HhaI	GCGC	2 cut(s)	349, 605
Hin1II	CATG	5 cut(s)	99, 241, 293, 311, 709
Hin6I	GCGC	2 cut(s)	347, 603
HinP1I	GCGC	2 cut(s)	347, 603
HincII	GTYRAC	1 cut(s)	111
HindII	GTYRAC	1 cut(s)	111
HinfI	GANTC	2 cut(s)	119, 615
HpaI	GTTAAC	1 cut(s)	111
HphI	GGTGA	3 cut(s)	467, 604, 635
Hpy166II	GTNNAC	3 cut(s)	111, 260, 536
Hpy188I	TCNGA	3 cut(s)	214, 363, 423
Hpy8I	GTNNAC	3 cut(s)	111, 260, 536
HpyAV	CCTTC	2 cut(s)	110, 137
HpyCH4V	TGCA	3 cut(s)	22, 95, 647
HpyF10VI	GCNNNNNNNGC	6 cut(s)	122, 318, 392, 653, 662, 665
HpyF3I	CTNAG	5 cut(s)	121, 184, 313, 360, 578
Hsp92II	CATG	5 cut(s)	99, 241, 293, 311, 709
HspAI	GCGC	2 cut(s)	347, 603
KspAI	GTTAAC	1 cut(s)	111
Kzo9I	GATC	2 cut(s)	286, 418
LpnPI	CCDG	8 cut(s)	86, 303, 349, 414, 516, 544, 548, 738
Lsp1109I	GCAGC	8 cut(s)	230, 268, 331, 379, 493, 496, 643, 652
LweI	GCATC	2 cut(s)	517, 598
MaeI	CTAG	2 cut(s)	524, 612
MaeIII	GTNAC	2 cut(s)	558, 623
MalI	GATC	2 cut(s)	288, 420
MboI	GATC	2 cut(s)	286, 418
MboII	GAAGA	4 cut(s)	76, 122, 125, 483
MfeI	CAATTG	1 cut(s)	381
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	6 cut(s)	197, 381, 410, 430, 450, 551
MlyI	GAGTC	2 cut(s)	113, 609
MmeI	TCCRAC	1 cut(s)	200
MnlI	CCTC	5 cut(s)	345, 451, 577, 642, 744
MroXI	GAANNNNTTC	1 cut(s)	80
MseI	TTAA	4 cut(s)	110, 449, 492, 516
MspA1I	CMGCKG	1 cut(s)	281
MspCI	CTTAAG	1 cut(s)	491
MunI	CAATTG	1 cut(s)	381
Mva1269I	GAATGC	1 cut(s)	748
MwoI	GCNNNNNNNGC	6 cut(s)	122, 318, 392, 653, 662, 665
NdeI	CATATG	2 cut(s)	298, 466
NdeII	GATC	2 cut(s)	286, 418
NlaIII	CATG	5 cut(s)	99, 241, 293, 311, 709
NmuCI	GTSAC	2 cut(s)	558, 623
NsbI	TGCGCA	1 cut(s)	348
NspI	RCATGY	1 cut(s)	99
PaeI	GCATGC	1 cut(s)	99
PceI	AGGCCT	1 cut(s)	446
PctI	GAATGC	1 cut(s)	748
PdmI	GAANNNNTTC	1 cut(s)	80
PkrI	GCNGC	8 cut(s)	245, 283, 346, 394, 508, 511, 658, 667
PleI	GAGTC	2 cut(s)	113, 609
PpsI	GAGTC	2 cut(s)	113, 609
PspPI	GGNCC	3 cut(s)	293, 500, 755
PsuI	RGATCY	1 cut(s)	418
PvuII	CAGCTG	1 cut(s)	281
RsaI	GTAC	2 cut(s)	261, 303
RsaNI	GTAC	2 cut(s)	260, 302
SaqAI	TTAA	4 cut(s)	110, 449, 492, 516
SatI	GCNGC	8 cut(s)	244, 282, 345, 393, 507, 510, 657, 666
Sau3AI	GATC	2 cut(s)	286, 418
Sau96I	GGNCC	3 cut(s)	293, 500, 755
SchI	GAGTC	2 cut(s)	113, 609
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	6 cut(s)	283, 346, 525, 574, 594, 691
SfaNI	GCATC	2 cut(s)	517, 598
SfcI	CTRYAG	1 cut(s)	728
SinI	GGWCC	2 cut(s)	293, 755
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
SphI	GCATGC	1 cut(s)	99
Sse9I	AATT	6 cut(s)	197, 381, 410, 430, 450, 551
SseBI	AGGCCT	1 cut(s)	446
SsiI	CCGC	2 cut(s)	284, 305
SspMI	CTAG	2 cut(s)	524, 612
StuI	AGGCCT	1 cut(s)	446
StyI	CCWWGG	1 cut(s)	636
TaqII	GACCGA	1 cut(s)	738
TasI	AATT	6 cut(s)	197, 381, 410, 430, 450, 551
TatI	WGTACW	1 cut(s)	259
Tru1I	TTAA	4 cut(s)	110, 449, 492, 516
Tru9I	TTAA	4 cut(s)	110, 449, 492, 516
TscAI	CASTG	1 cut(s)	605
TseFI	GTSAC	2 cut(s)	558, 623
TseI	GCWGC	8 cut(s)	243, 281, 344, 392, 506, 509, 656, 665
Tsp45I	GTSAC	2 cut(s)	558, 623
TspDTI	ATGAA	4 cut(s)	78, 423, 453, 699
TspRI	CASTG	1 cut(s)	605
Vha464I	CTTAAG	1 cut(s)	491
VpaK11BI	GGWCC	2 cut(s)	293, 755
XapI	RAATTY	1 cut(s)	551
XceI	RCATGY	1 cut(s)	99
XmnI	GAANNNNTTC	1 cut(s)	80
XspI	CTAG	2 cut(s)	524, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.