Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

55371282 .. 55371825

Gene Structure 544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG294400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGATGGTTGGAAGTCGGCGTTCAGAGGAGGTGGTGGATCCAAACATTGAGACCAGACCATCGACAAGTGCCCTTAAACGAGCCCTCTTGACTGCGTTAAGGTGTGTAGATCCTGATTCTGATAAAAGACCAAAGATGGGTCAAGTTGTTCGCATGCTTGAATCCGAGGAATATCCTGTACTTCGAGAGGATCGAAGACGCCGAAAAATTCAAGCAGGCAATGTGGAGGGCGAGTCTCAGAAAGACAATTCTGATACAGATAGGAGTGACAATCCAGATACAAGGACCAACAACAGAAGGAACAATCGAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

104

Amino Acids

12.0

Weight (kDa)

9.41

Isoelectric Point (pI)

81.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	32, 45, 104, 198
AcsI	RAATTY	1 cut(s)	207
AcyI	GRCGYC	1 cut(s)	199
AfaI	GTAC	1 cut(s)	180
AfiI	CCNNNNNNNGG	1 cut(s)	137
AgsI	TTSAA	2 cut(s)	161, 212
Alw26I	GTCTC	2 cut(s)	44, 240
AlwI	GGATC	4 cut(s)	32, 45, 104, 198
ApoI	RAATTY	1 cut(s)	207
AspS9I	GGNCC	1 cut(s)	285
AvaII	GGWCC	1 cut(s)	285
BaeGI	GKGCMC	1 cut(s)	73
BamHI	GGATCC	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	85
BbsI	GAAGAC	1 cut(s)	202
BccI	CCATC	2 cut(s)	67, 130
BcoDI	GTCTC	2 cut(s)	44, 240
Bme18I	GGWCC	1 cut(s)	285
BmgT120I	GGNCC	1 cut(s)	285
BmiI	GGNNCC	1 cut(s)	39
BpiI	GAAGAC	1 cut(s)	202
BsaHI	GRCGYC	1 cut(s)	199
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	165
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse3DI	GCAATG	1 cut(s)	226
BseDI	CCNNGG	1 cut(s)	165
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMI	GCAATG	1 cut(s)	226
BseMII	CTCAG	1 cut(s)	251
BseRI	GAGGAG	1 cut(s)	41
BseSI	GKGCMC	1 cut(s)	73
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmAI	GTCTC	2 cut(s)	44, 240
Bso31I	GGTCTC	1 cut(s)	44
Bsp1286I	GDGCHC	2 cut(s)	73, 85
Bsp143I	GATC	3 cut(s)	37, 109, 190
BspCNI	CTCAG	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	39
BspPI	GGATC	4 cut(s)	32, 45, 104, 198
BspTNI	GGTCTC	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	226
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	3 cut(s)	37, 109, 190
BssNI	GRCGYC	1 cut(s)	199
BstACI	GRCGYC	1 cut(s)	199
BstC8I	GCNNGC	2 cut(s)	155, 217
BstDEI	CTNAG	1 cut(s)	237
BstKTI	GATC	3 cut(s)	40, 112, 193
BstMAI	GTCTC	2 cut(s)	44, 240
BstMBI	GATC	3 cut(s)	37, 109, 190
BstNSI	RCATGY	1 cut(s)	157
BstSLI	GKGCMC	1 cut(s)	73
BstV2I	GAAGAC	1 cut(s)	202
BstX2I	RGATCY	2 cut(s)	37, 109
BstYI	RGATCY	2 cut(s)	37, 109
Cac8I	GCNNGC	2 cut(s)	155, 217
Cfr13I	GGNCC	1 cut(s)	285
CseI	GACGC	1 cut(s)	207
Csp6I	GTAC	1 cut(s)	179
CviAII	CATG	1 cut(s)	154
CviJI	RGCY	1 cut(s)	83
CviKI_1	RGCY	1 cut(s)	83
CviQI	GTAC	1 cut(s)	179
DdeI	CTNAG	1 cut(s)	237
DpnI	GATC	3 cut(s)	39, 111, 192
DpnII	GATC	3 cut(s)	37, 109, 190
Eco24I	GRGCYC	1 cut(s)	85
Eco31I	GGTCTC	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	285
EcoT38I	GRGCYC	1 cut(s)	85
FaeI	CATG	1 cut(s)	157
FaiI	YATR	2 cut(s)	155, 313
FatI	CATG	1 cut(s)	153
FriOI	GRGCYC	1 cut(s)	85
HgaI	GACGC	1 cut(s)	207
Hin1I	GRCGYC	1 cut(s)	199
Hin1II	CATG	1 cut(s)	157
HinfI	GANTC	3 cut(s)	116, 161, 233
Hpy188I	TCNGA	5 cut(s)	25, 121, 166, 240, 253
Hpy188III	TCNNGA	4 cut(s)	88, 113, 185, 275
HpyAV	CCTTC	1 cut(s)	291
HpyF3I	CTNAG	1 cut(s)	237
Hsp92I	GRCGYC	1 cut(s)	199
Hsp92II	CATG	1 cut(s)	157
Kzo9I	GATC	3 cut(s)	37, 109, 190
LpnPI	CCDG	5 cut(s)	67, 126, 189, 201, 288
MaeIII	GTNAC	1 cut(s)	266
MalI	GATC	3 cut(s)	39, 111, 192
MboI	GATC	3 cut(s)	37, 109, 190
MboII	GAAGA	1 cut(s)	207
MflI	RGATCY	2 cut(s)	37, 109
MhlI	GDGCHC	2 cut(s)	73, 85
MluCI	AATT	2 cut(s)	207, 247
MlyI	GAGTC	1 cut(s)	242
MnlI	CCTC	6 cut(s)	19, 22, 95, 160, 181, 220
MseI	TTAA	2 cut(s)	75, 98
NdeII	GATC	3 cut(s)	37, 109, 190
NlaIII	CATG	1 cut(s)	157
NlaIV	GGNNCC	1 cut(s)	39
NmuCI	GTSAC	1 cut(s)	266
NspI	RCATGY	1 cut(s)	157
PaeI	GCATGC	1 cut(s)	157
PcsI	WCGNNNNNNNCGW	2 cut(s)	190, 199
PfeI	GAWTC	2 cut(s)	116, 161
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	285
PsuI	RGATCY	2 cut(s)	37, 109
RsaI	GTAC	1 cut(s)	180
RsaNI	GTAC	1 cut(s)	179
SaqAI	TTAA	2 cut(s)	75, 98
Sau3AI	GATC	3 cut(s)	37, 109, 190
Sau96I	GGNCC	1 cut(s)	285
SchI	GAGTC	1 cut(s)	242
SduI	GDGCHC	2 cut(s)	73, 85
SetI	ASST	2 cut(s)	33, 104
SinI	GGWCC	1 cut(s)	285
SphI	GCATGC	1 cut(s)	157
Sse9I	AATT	2 cut(s)	207, 247
TaqI	TCGA	4 cut(s)	62, 184, 193, 307
TasI	AATT	2 cut(s)	207, 247
TatI	WGTACW	1 cut(s)	178
TfiI	GAWTC	2 cut(s)	116, 161
Tru1I	TTAA	2 cut(s)	75, 98
Tru9I	TTAA	2 cut(s)	75, 98
TseFI	GTSAC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	266
VpaK11BI	GGWCC	1 cut(s)	285
XapI	RAATTY	1 cut(s)	207
XceI	RCATGY	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.