Rh4CG336000
TCP Family

TCP-1/cpn60 chaperonin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
N/A
Physical Location & Seq
Reverse (-)
59593962 .. 59598422
4461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG336000.1

Sequence Viewer

Length: 1257 bp
ATGGCGCTGGCTTTCGATGAGTTCGGCCGGCCATTCATAATCCTGAGGGAGCAGGAGCAGAAGTCCCGATTGAGAGGCCTCGATGCTCAGAAGGCCAACATTGCCGCCGGCAAGGCCGTCGCCAAAATCCTCCGAACCTCGCTCGGACCCAAAGGCATGGACAAGATGCTCCAGAGCCCCGACGGCGAGGTCACCGTCACAAATGATGGTGCCACGATCTTGGAGCAGATGGATGTTGACAATCAAATTGCAAAGCTGATGGTTGAACTGTCGCAGAGTCAGGACTATGAAATTGGTGATGGGACAACTGGAGTTGTTGTGTTGGCTGGTTCACTTCTAGAGCAGGCTGAGCGGCTCTTGGAGCGCGGTATTCATCCCATTAGGGTTGCAGAGGGATATGAGATGGCATCCAGGATTGCTGTTGATCATTTGCAGCATATATCAAAGAAATTTGAATTTGGACTGGAAAATATTGAGCCTTTGGTTCAGACTTGCATGACTACTTTGTCATCAAAGATTGTCAATCGGTGCAAGCGTCCCCTTGCTGAGATTGCTGTCAGAGCAGTTCTTGCTGTTGCTGATTTAGAGAGGAAGGATGTGAACCTAGATTTGATTAAAGTAGAGGGGAAAGTAGGGGGAAAATTAGAGGATACTGAGCTGGTTTATGGTATTCTTATTGACAAGGATATGAGCCATCCACAAATGCCCAAGCGTATTGAAGATGCAAAAATTGCTATCTTGACTTGTCCCTTTGAGCCCCCGAAGCCAAAGACAAAGCATAAGGTCGATATTGATACTGTGGAAAAGTTTCAGACTCTGCGTGTGCAAGAACAGGAATACTTTGATCAGATGGTTCAAAAATGCAAGGATGCCGGTGCTACCTTGGTCATCTGCCAATGGGGGTTTGATGATGAAGCCAATCACCTATTGATGCACAGGAACTTGCCTGCTGTCAGATGGGTTGGTGGTGTTGAGTTGGAACTAATTGCAATAGCTACAGGGGGAAGAATTGTGCCCAGGTTCCAAGAGTTGACACCAGATAAGTTGGGGAAGGCTGGCTTGGTTCGTGAAAAATCATTTGGTACTACAAAAGATCGAATGCTGTACATTGAACACTGTGCAAATTCAAGGGCTGTAACCATATTTATCCGCGGAGGTATGGTTCTATTTTACTTTTTGTGTTCCTTTTACCTCCAACTTGAATCAGCATGTCAATTGAGTGGAAATGGTGCGTATAAGATGAACCCTTTTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cpn60_TCP1

Protein Analysis

418

Amino Acids

46.69

Weight (kDa)

6.14

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 40 - 386 9.7e-115 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 188, 505
AccB1I GGYRCC 1 cut(s) 209
AccBSI CCGCTC 1 cut(s) 352
AccII CGCG 2 cut(s) 366, 1152
AciI CCGC 5 cut(s) 105, 352, 366, 1150, 1152
AcoI YGGCCR 2 cut(s) 25, 29
AcsI RAATTY 3 cut(s) 449, 455, 1123
AfaI GTAC 2 cut(s) 1084, 1106
AgsI TTSAA 7 cut(s) 266, 455, 719, 857, 1112, 1128, 1202
AjnI CCWGG 2 cut(s) 410, 1016
AjuI GAANNNNNNNTTGG 4 cut(s) 1043, 1062, 1075, 1094
AloI GAACNNNNNNTCC 2 cut(s) 1146, 1178
AluBI AGCT 3 cut(s) 256, 658, 995
AluI AGCT 3 cut(s) 256, 658, 995
AlwNI CAGNNNCTG 1 cut(s) 817
AoxI GGCC 5 cut(s) 25, 29, 76, 93, 114
ApeKI GCWGC 1 cut(s) 433
ApoI RAATTY 3 cut(s) 449, 455, 1123
Asp700I GAANNNNTTC 1 cut(s) 807
AspLEI GCGC 2 cut(s) 7, 366
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 3 cut(s) 184, 308, 914
AvaII GGWCC 1 cut(s) 146
AxyI CCTNAGG 1 cut(s) 44
BaeGI GKGCMC 1 cut(s) 1017
BanI GGYRCC 1 cut(s) 209
BanII GRGCYC 2 cut(s) 179, 759
BbvI GCAGC 1 cut(s) 445
BccI CCATC 8 cut(s) 200, 223, 253, 293, 397, 702, 844, 951
BceAI ACGGC 2 cut(s) 101, 199
BcgI CGANNNNNNTGC 2 cut(s) 100, 134
BciT130I CCWGG 2 cut(s) 412, 1018
BciVI GTATCC 1 cut(s) 643
BclI TGATCA 2 cut(s) 424, 844
BfaI CTAG 2 cut(s) 338, 605
BfmI CTRYAG 1 cut(s) 996
BfoI RGCGCY 1 cut(s) 8
BfuI GTATCC 1 cut(s) 643
BglI GCCNNNNNGGC 2 cut(s) 113, 183
BisI GCNGC 3 cut(s) 105, 353, 434
BlpI GCTNAGC 1 cut(s) 348
BlsI GCNGC 3 cut(s) 106, 354, 435
Bme1390I CCNGG 2 cut(s) 412, 1018
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 3 cut(s) 148, 211, 1022
BmrFI CCNGG 2 cut(s) 412, 1018
BmsI GCATC 6 cut(s) 73, 156, 416, 712, 859, 921
BpmI CTGGAG 2 cut(s) 155, 330
Bpu1102I GCTNAGC 1 cut(s) 348
BsaJI CCNNGG 3 cut(s) 882, 1016, 1150
BsaXI ACNNNNNCTCC 6 cut(s) 47, 77, 303, 333, 1146, 1176
Bse118I RCCGGY 3 cut(s) 27, 107, 872
Bse1I ACTGG 2 cut(s) 313, 468
Bse21I CCTNAGG 1 cut(s) 44
Bse3DI GCAATG 1 cut(s) 99
BseBI CCWGG 2 cut(s) 412, 1018
BseDI CCNNGG 3 cut(s) 882, 1016, 1150
BseGI GGATG 6 cut(s) 238, 373, 407, 601, 694, 874
BseMI GCAATG 1 cut(s) 99
BseMII CTCAG 5 cut(s) 35, 101, 339, 537, 645
BseNI ACTGG 2 cut(s) 313, 468
BseSI GKGCMC 1 cut(s) 1017
BseX3I CGGCCG 1 cut(s) 25
BseXI GCAGC 1 cut(s) 445
Bsh1236I CGCG 2 cut(s) 366, 1152
Bsh1285I CGRYCG 1 cut(s) 28
BshFI GGCC 5 cut(s) 27, 31, 78, 95, 116
BshNI GGYRCC 1 cut(s) 209
BsiEI CGRYCG 1 cut(s) 28
BsiSI CCGG 3 cut(s) 28, 108, 873
BslFI GGGAC 4 cut(s) 49, 316, 522, 732
BsmFI GGGAC 4 cut(s) 49, 316, 522, 732
BsmI GAATGC 1 cut(s) 1104
BsnI GGCC 5 cut(s) 27, 31, 78, 95, 116
Bsp1286I GDGCHC 3 cut(s) 179, 759, 1017
Bsp1407I TGTACA 1 cut(s) 1104
Bsp143I GATC 4 cut(s) 216, 424, 844, 1093
Bsp1720I GCTNAGC 1 cut(s) 348
BspACI CCGC 5 cut(s) 105, 352, 366, 1150, 1152
BspANI GGCC 5 cut(s) 27, 31, 78, 95, 116
BspCNI CTCAG 5 cut(s) 36, 100, 340, 538, 646
BspFNI CGCG 2 cut(s) 366, 1152
BspLI GGNNCC 3 cut(s) 148, 211, 1022
BspT107I GGYRCC 1 cut(s) 209
BsrBI CCGCTC 1 cut(s) 352
BsrDI GCAATG 1 cut(s) 99
BsrFI RCCGGY 3 cut(s) 27, 107, 872
BsrGI TGTACA 1 cut(s) 1104
BsrI ACTGG 2 cut(s) 313, 468
BssAI RCCGGY 3 cut(s) 27, 107, 872
BssECI CCNNGG 3 cut(s) 882, 1016, 1150
BssMI GATC 4 cut(s) 216, 424, 844, 1093
BssT1I CCWWGG 1 cut(s) 882
Bst2UI CCWGG 2 cut(s) 412, 1018
Bst4CI ACNGT 4 cut(s) 196, 270, 799, 1118
BstAPI GCANNNNNTGC 2 cut(s) 569, 731
BstAUI TGTACA 1 cut(s) 1104
BstC8I GCNNGC 7 cut(s) 9, 29, 109, 345, 533, 948, 1057
BstDEI CTNAG 5 cut(s) 44, 87, 348, 546, 654
BstDSI CCRYGG 1 cut(s) 1150
BstEII GGTNACC 1 cut(s) 190
BstF5I GGATG 6 cut(s) 238, 373, 407, 601, 694, 874
BstFNI CGCG 2 cut(s) 366, 1152
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 366
BstKTI GATC 4 cut(s) 219, 427, 847, 1096
BstMBI GATC 4 cut(s) 216, 424, 844, 1093
BstMCI CGRYCG 1 cut(s) 28
BstNI CCWGG 2 cut(s) 412, 1018
BstNSI RCATGY 1 cut(s) 1212
BstPI GGTNACC 1 cut(s) 190
BstSCI CCNGG 2 cut(s) 410, 1016
BstSFI CTRYAG 1 cut(s) 996
BstSLI GKGCMC 1 cut(s) 1017
BstUI CGCG 2 cut(s) 366, 1152
BstV1I GCAGC 1 cut(s) 445
BstXI CCANNNNNNTGG 2 cut(s) 157, 220
BstZI CGGCCG 1 cut(s) 25
Bsu36I CCTNAGG 1 cut(s) 44
BsuI GTATCC 1 cut(s) 643
BsuRI GGCC 5 cut(s) 27, 31, 78, 95, 116
BtgI CCRYGG 1 cut(s) 1150
BtsCI GGATG 6 cut(s) 238, 373, 407, 601, 694, 874
BtsIMutI CAGTG 1 cut(s) 1114
Cac8I GCNNGC 7 cut(s) 9, 29, 109, 345, 533, 948, 1057
CaiI CAGNNNCTG 1 cut(s) 817
CfoI GCGC 2 cut(s) 7, 366
Cfr10I RCCGGY 3 cut(s) 27, 107, 872
Cfr13I GGNCC 1 cut(s) 146
Cfr42I CCGCGG 1 cut(s) 1153
CseI GACGC 1 cut(s) 524
Csp6I GTAC 2 cut(s) 1083, 1105
CviAII CATG 3 cut(s) 157, 496, 1209
CviQI GTAC 2 cut(s) 1083, 1105
DdeI CTNAG 5 cut(s) 44, 87, 348, 546, 654
DpnI GATC 4 cut(s) 218, 426, 846, 1095
DpnII GATC 4 cut(s) 216, 424, 844, 1093
DrdI GACNNNNNNGTC 2 cut(s) 188, 505
DseDI GACNNNNNNGTC 2 cut(s) 188, 505
EaeI YGGCCR 2 cut(s) 25, 29
EagI CGGCCG 1 cut(s) 25
EclXI CGGCCG 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 882
Eco147I AGGCCT 1 cut(s) 78
Eco24I GRGCYC 2 cut(s) 179, 759
Eco47I GGWCC 1 cut(s) 146
Eco52I CGGCCG 1 cut(s) 25
Eco81I CCTNAGG 1 cut(s) 44
Eco91I GGTNACC 1 cut(s) 190
EcoO65I GGTNACC 1 cut(s) 190
EcoRII CCWGG 2 cut(s) 410, 1016
EcoT14I CCWWGG 1 cut(s) 882
EcoT38I GRGCYC 2 cut(s) 179, 759
ErhI CCWWGG 1 cut(s) 882
FaeI CATG 3 cut(s) 160, 499, 1212
FalI AAGNNNNNCTT 2 cut(s) 1043, 1075
FaqI GGGAC 4 cut(s) 49, 316, 522, 732
FatI CATG 3 cut(s) 156, 495, 1208
FbaI TGATCA 2 cut(s) 424, 844
Fnu4HI GCNGC 3 cut(s) 105, 353, 434
FokI GGATG 6 cut(s) 245, 360, 394, 608, 681, 881
FriOI GRGCYC 2 cut(s) 179, 759
FseI GGCCGGCC 1 cut(s) 31
Fsp4HI GCNGC 3 cut(s) 105, 353, 434
FspBI CTAG 2 cut(s) 338, 605
GlaI GCGC 2 cut(s) 6, 365
GluI GCNGC 3 cut(s) 105, 353, 434
GsuI CTGGAG 2 cut(s) 155, 330
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 5 cut(s) 27, 31, 78, 95, 116
HapII CCGG 3 cut(s) 28, 108, 873
HgaI GACGC 1 cut(s) 524
HhaI GCGC 2 cut(s) 7, 366
Hin1II CATG 3 cut(s) 160, 499, 1212
Hin6I GCGC 2 cut(s) 5, 364
HinP1I GCGC 2 cut(s) 5, 364
HincII GTYRAC 2 cut(s) 238, 1032
HindII GTYRAC 2 cut(s) 238, 1032
HinfI GANTC 3 cut(s) 277, 814, 1202
HpaII CCGG 3 cut(s) 28, 108, 873
HphI GGTGA 3 cut(s) 184, 308, 914
Hpy166II GTNNAC 4 cut(s) 238, 332, 601, 1032
Hpy188I TCNGA 8 cut(s) 90, 134, 146, 489, 560, 813, 849, 956
Hpy188III TCNNGA 7 cut(s) 43, 66, 172, 281, 338, 739, 1067
Hpy8I GTNNAC 4 cut(s) 238, 332, 601, 1032
Hpy99I CGWCG 2 cut(s) 122, 185
HpyAV CCTTC 3 cut(s) 85, 586, 1045
HpyCH4III ACNGT 4 cut(s) 196, 270, 799, 1118
HpyF3I CTNAG 5 cut(s) 44, 87, 348, 546, 654
Hsp92II CATG 3 cut(s) 160, 499, 1212
HspAI GCGC 2 cut(s) 5, 364
KroI GCCGGC 2 cut(s) 27, 107
KroNI GCCGGC 2 cut(s) 29, 109
Ksp22I TGATCA 2 cut(s) 424, 844
KspI CCGCGG 1 cut(s) 1153
Kzo9I GATC 4 cut(s) 216, 424, 844, 1093
LmnI GCTCC 5 cut(s) 49, 55, 174, 223, 361
Lsp1109I GCAGC 1 cut(s) 445
LweI GCATC 6 cut(s) 73, 156, 416, 712, 859, 921
MaeI CTAG 2 cut(s) 338, 605
MaeIII GTNAC 3 cut(s) 190, 196, 1135
MalI GATC 4 cut(s) 218, 426, 846, 1095
MbiI CCGCTC 1 cut(s) 352
MboI GATC 4 cut(s) 216, 424, 844, 1093
MboII GAAGA 2 cut(s) 731, 1017
MfeI CAATTG 1 cut(s) 1214
MhlI GDGCHC 3 cut(s) 179, 759, 1017
MlyI GAGTC 2 cut(s) 286, 808
MmeI TCCRAC 2 cut(s) 957, 1219
MroNI GCCGGC 2 cut(s) 27, 107
MroXI GAANNNNTTC 1 cut(s) 807
MseI TTAA 1 cut(s) 615
MspA1I CMGCKG 1 cut(s) 1152
MspI CCGG 3 cut(s) 28, 108, 873
MspR9I CCNGG 2 cut(s) 412, 1018
MunI CAATTG 1 cut(s) 1214
Mva1269I GAATGC 1 cut(s) 1104
MvaI CCWGG 2 cut(s) 412, 1018
MvnI CGCG 2 cut(s) 366, 1152
NaeI GCCGGC 2 cut(s) 29, 109
NdeII GATC 4 cut(s) 216, 424, 844, 1093
NgoMIV GCCGGC 2 cut(s) 27, 107
NlaIII CATG 3 cut(s) 160, 499, 1212
NlaIV GGNNCC 3 cut(s) 148, 211, 1022
NmuCI GTSAC 2 cut(s) 190, 196
NspI RCATGY 1 cut(s) 1212
PceI AGGCCT 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 532
PctI GAATGC 1 cut(s) 1104
PdiI GCCGGC 2 cut(s) 29, 109
PdmI GAANNNNTTC 1 cut(s) 807
PfeI GAWTC 1 cut(s) 1202
PfoI TCCNGGA 1 cut(s) 410
PkrI GCNGC 3 cut(s) 106, 354, 435
PleI GAGTC 2 cut(s) 285, 808
PpsI GAGTC 2 cut(s) 285, 808
Psp6I CCWGG 2 cut(s) 410, 1016
PspEI GGTNACC 1 cut(s) 190
PspGI CCWGG 2 cut(s) 410, 1016
PspN4I GGNNCC 3 cut(s) 148, 211, 1022
PspPI GGNCC 1 cut(s) 146
PstNI CAGNNNCTG 1 cut(s) 817
RigI GGCCGGCC 1 cut(s) 31
RsaI GTAC 2 cut(s) 1084, 1106
RsaNI GTAC 2 cut(s) 1083, 1105
SacII CCGCGG 1 cut(s) 1153
SaqAI TTAA 1 cut(s) 615
SatI GCNGC 3 cut(s) 105, 353, 434
Sau3AI GATC 4 cut(s) 216, 424, 844, 1093
Sau96I GGNCC 1 cut(s) 146
SchI GAGTC 2 cut(s) 286, 808
ScrFI CCNGG 2 cut(s) 412, 1018
SduI GDGCHC 3 cut(s) 179, 759, 1017
SfaNI GCATC 6 cut(s) 73, 156, 416, 712, 859, 921
SfcI CTRYAG 1 cut(s) 996
Sfr303I CCGCGG 1 cut(s) 1153
SgrBI CCGCGG 1 cut(s) 1153
SinI GGWCC 1 cut(s) 146
SseBI AGGCCT 1 cut(s) 78
SsiI CCGC 5 cut(s) 105, 352, 366, 1150, 1152
SspI AATATT 1 cut(s) 472
SspMI CTAG 2 cut(s) 338, 605
StuI AGGCCT 1 cut(s) 78
StyD4I CCNGG 2 cut(s) 410, 1016
StyI CCWWGG 1 cut(s) 882
TaaI ACNGT 4 cut(s) 196, 270, 799, 1118
TaqI TCGA 4 cut(s) 15, 81, 786, 1096
TatI WGTACW 1 cut(s) 1104
TauI GCSGC 2 cut(s) 107, 355
TfiI GAWTC 1 cut(s) 1202
Tru1I TTAA 1 cut(s) 615
Tru9I TTAA 1 cut(s) 615
TscAI CASTG 1 cut(s) 1121
TseFI GTSAC 2 cut(s) 190, 196
TseI GCWGC 1 cut(s) 433
Tsp45I GTSAC 2 cut(s) 190, 196
TspDTI ATGAA 5 cut(s) 25, 303, 362, 927, 1256
TspRI CASTG 1 cut(s) 1121
VpaK11BI GGWCC 1 cut(s) 146
XapI RAATTY 3 cut(s) 449, 455, 1123
XbaI TCTAGA 1 cut(s) 337
XceI RCATGY 1 cut(s) 1212
XmnI GAANNNNTTC 1 cut(s) 807
XspI CTAG 2 cut(s) 338, 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.