Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

67604758 .. 67605426

Gene Structure 669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG438100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCCTTTCGGTTTAGTCTCAGCATGGAACAAGCGCAGAAGGTCCAAATCCTACGACCACACAGACCCTTGGACTTACAAGCCAGTGGAGTTCTGGCAACTAAATGATCAAACACCTCAACAAACGAAAAGGCAGCATCATGGCTCTTCAGTGTTTACACTCAAAGAAATGGACGAGGCAACATCTTCATTCAGTGACAAGAACTTTCTTGGGAAAGGAGGATTTGGCCGCGTATATAGAGGAACTTTGCGCTCAGGAGAGGTTGTAGCAATTAAAAAGATGGAGCAGCCTCCCTTTAAAGCAGCTGACGGAGAACGAGAATTTCGGGTAGAAGTAGACATCTTGAGCAGACTTGATCACCCAAATTTGGTTTCTTTGATAGGCTATTGTGCTGATGGCAAGCACCGGTTTTTAGTATATGAATACCTGCAGAAAGGGAACCTGCAAGATCACTTAAATGGTAATTCGCAGCTCAAATATGCAGACTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase

Protein Analysis

163

Amino Acids

18.86

Weight (kDa)

9.14

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	65 - 158	4.2e-17	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	68 - 155	6.8e-17	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	435, 450
AccI	GTMKAC	1 cut(s)	336
AccII	CGCG	1 cut(s)	231
AciI	CCGC	1 cut(s)	229
AcoI	YGGCCR	1 cut(s)	226
AcsI	RAATTY	2 cut(s)	320, 364
AcuI	CTGAAG	1 cut(s)	132
AfiI	CCNNNNNNNGG	1 cut(s)	367
AgeI	ACCGGT	1 cut(s)	405
AjuI	GAANNNNNNNTTGG	2 cut(s)	355, 387
AluBI	AGCT	2 cut(s)	305, 472
AluI	AGCT	2 cut(s)	305, 472
Alw26I	GTCTC	1 cut(s)	22
AoxI	GGCC	1 cut(s)	226
ApeKI	GCWGC	4 cut(s)	133, 286, 302, 469
ApoI	RAATTY	2 cut(s)	320, 364
AsiGI	ACCGGT	1 cut(s)	405
AspLEI	GCGC	2 cut(s)	36, 252
AspS9I	GGNCC	1 cut(s)	42
AsuHPI	GGTGA	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	42
BbvI	GCAGC	4 cut(s)	145, 298, 314, 481
BccI	CCATC	2 cut(s)	274, 389
BclI	TGATCA	2 cut(s)	106, 355
BcoDI	GTCTC	1 cut(s)	22
BfmI	CTRYAG	1 cut(s)	428
BfuAI	ACCTGC	2 cut(s)	435, 450
BisI	GCNGC	5 cut(s)	134, 229, 287, 303, 470
BlsI	GCNGC	5 cut(s)	135, 230, 288, 304, 471
Bme18I	GGWCC	1 cut(s)	42
BmgT120I	GGNCC	1 cut(s)	42
BmiI	GGNNCC	1 cut(s)	440
BmsI	GCATC	1 cut(s)	145
Bpu10I	CCTNAGC	1 cut(s)	253
BpuEI	CTTGAG	1 cut(s)	364
BsaJI	CCNNGG	1 cut(s)	68
BsaWI	WCCGGW	1 cut(s)	405
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
Bse118I	RCCGGY	1 cut(s)	405
Bse1I	ACTGG	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	68
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseMII	CTCAG	2 cut(s)	33, 267
BseNI	ACTGG	1 cut(s)	83
BseXI	GCAGC	4 cut(s)	145, 298, 314, 481
Bsh1236I	CGCG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	228
BshTI	ACCGGT	1 cut(s)	405
BsiSI	CCGG	1 cut(s)	406
BslI	CCNNNNNNNGG	1 cut(s)	367
BsmAI	GTCTC	1 cut(s)	22
BsnI	GGCC	1 cut(s)	228
Bsp143I	GATC	3 cut(s)	106, 355, 448
BspACI	CCGC	1 cut(s)	229
BspANI	GGCC	1 cut(s)	228
BspCNI	CTCAG	2 cut(s)	32, 266
BspFNI	CGCG	1 cut(s)	231
BspLI	GGNNCC	1 cut(s)	440
BspMAI	CTGCAG	1 cut(s)	432
BspMI	ACCTGC	2 cut(s)	435, 450
BspQI	GCTCTTC	1 cut(s)	151
BsrFI	RCCGGY	1 cut(s)	405
BsrI	ACTGG	1 cut(s)	83
BssAI	RCCGGY	1 cut(s)	405
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	3 cut(s)	106, 355, 448
BssT1I	CCWWGG	1 cut(s)	68
Bst6I	CTCTTC	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	401
BstDEI	CTNAG	2 cut(s)	19, 253
BstFNI	CGCG	1 cut(s)	231
BstHHI	GCGC	2 cut(s)	36, 252
BstKTI	GATC	3 cut(s)	109, 358, 451
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	3 cut(s)	106, 355, 448
BstSFI	CTRYAG	1 cut(s)	428
BstUI	CGCG	1 cut(s)	231
BstV1I	GCAGC	4 cut(s)	145, 298, 314, 481
BsuRI	GGCC	1 cut(s)	228
BtsIMutI	CAGTG	3 cut(s)	90, 156, 199
BveI	ACCTGC	2 cut(s)	435, 450
Cac8I	GCNNGC	1 cut(s)	401
CfoI	GCGC	2 cut(s)	36, 252
Cfr10I	RCCGGY	1 cut(s)	405
Cfr13I	GGNCC	1 cut(s)	42
CspAI	ACCGGT	1 cut(s)	405
CviAII	CATG	2 cut(s)	24, 140
CviJI	RGCY	7 cut(s)	82, 144, 228, 289, 305, 384, 472
CviKI_1	RGCY	7 cut(s)	82, 144, 228, 289, 305, 384, 472
DdeI	CTNAG	2 cut(s)	19, 253
DpnI	GATC	3 cut(s)	108, 357, 450
DpnII	GATC	3 cut(s)	106, 355, 448
DraI	TTTAAA	1 cut(s)	298
EaeI	YGGCCR	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	68
Eco47I	GGWCC	1 cut(s)	42
Eco57I	CTGAAG	1 cut(s)	132
EcoT14I	CCWWGG	1 cut(s)	68
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	2 cut(s)	27, 143
FaiI	YATR	7 cut(s)	25, 141, 235, 237, 418, 420, 480
FatI	CATG	2 cut(s)	23, 139
FbaI	TGATCA	2 cut(s)	106, 355
FblI	GTMKAC	1 cut(s)	336
Fnu4HI	GCNGC	5 cut(s)	134, 229, 287, 303, 470
Fsp4HI	GCNGC	5 cut(s)	134, 229, 287, 303, 470
GlaI	GCGC	2 cut(s)	35, 251
GluI	GCNGC	5 cut(s)	134, 229, 287, 303, 470
HaeIII	GGCC	1 cut(s)	228
HapII	CCGG	1 cut(s)	406
HhaI	GCGC	2 cut(s)	36, 252
Hin1II	CATG	2 cut(s)	27, 143
Hin6I	GCGC	2 cut(s)	34, 250
HinP1I	GCGC	2 cut(s)	34, 250
HpaII	CCGG	1 cut(s)	406
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	2 cut(s)	156, 337
Hpy188III	TCNNGA	2 cut(s)	255, 343
Hpy8I	GTNNAC	2 cut(s)	156, 337
HpyAV	CCTTC	1 cut(s)	33
HpyCH4V	TGCA	3 cut(s)	430, 445, 482
HpyF3I	CTNAG	2 cut(s)	19, 253
Hsp92II	CATG	2 cut(s)	27, 143
HspAI	GCGC	2 cut(s)	34, 250
Ksp22I	TGATCA	2 cut(s)	106, 355
Kzo9I	GATC	3 cut(s)	106, 355, 448
LguI	GCTCTTC	1 cut(s)	151
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	6 cut(s)	79, 96, 240, 419, 440, 455
Lsp1109I	GCAGC	4 cut(s)	145, 298, 314, 481
LweI	GCATC	1 cut(s)	145
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	3 cut(s)	108, 357, 450
MboI	GATC	3 cut(s)	106, 355, 448
MboII	GAAGA	2 cut(s)	138, 177
MluCI	AATT	4 cut(s)	270, 320, 364, 463
MnlI	CCTC	6 cut(s)	126, 169, 212, 233, 253, 300
MseI	TTAA	3 cut(s)	273, 297, 455
MslI	CAYNNNNRTG	1 cut(s)	456
MspA1I	CMGCKG	1 cut(s)	305
MspI	CCGG	1 cut(s)	406
MvnI	CGCG	1 cut(s)	231
NdeII	GATC	3 cut(s)	106, 355, 448
NlaIII	CATG	2 cut(s)	27, 143
NlaIV	GGNNCC	1 cut(s)	440
NmuCI	GTSAC	1 cut(s)	194
PciSI	GCTCTTC	1 cut(s)	151
PinAI	ACCGGT	1 cut(s)	405
PkrI	GCNGC	5 cut(s)	135, 230, 288, 304, 471
PspN4I	GGNNCC	1 cut(s)	440
PspPI	GGNCC	1 cut(s)	42
PstI	CTGCAG	1 cut(s)	432
PvuII	CAGCTG	1 cut(s)	305
RseI	CAYNNNNRTG	1 cut(s)	456
SapI	GCTCTTC	1 cut(s)	151
SaqAI	TTAA	3 cut(s)	273, 297, 455
SatI	GCNGC	5 cut(s)	134, 229, 287, 303, 470
Sau3AI	GATC	3 cut(s)	106, 355, 448
Sau96I	GGNCC	1 cut(s)	42
SetI	ASST	7 cut(s)	44, 118, 264, 307, 429, 444, 474
SfaNI	GCATC	1 cut(s)	145
SfcI	CTRYAG	1 cut(s)	428
SinI	GGWCC	1 cut(s)	42
SmiMI	CAYNNNNRTG	1 cut(s)	456
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
Sse9I	AATT	4 cut(s)	270, 320, 364, 463
SsiI	CCGC	1 cut(s)	229
StyI	CCWWGG	1 cut(s)	68
TasI	AATT	4 cut(s)	270, 320, 364, 463
TauI	GCSGC	1 cut(s)	231
Tru1I	TTAA	3 cut(s)	273, 297, 455
Tru9I	TTAA	3 cut(s)	273, 297, 455
TscAI	CASTG	3 cut(s)	90, 156, 199
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	4 cut(s)	133, 286, 302, 469
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	2 cut(s)	177, 435
TspGWI	ACGGA	1 cut(s)	324
TspRI	CASTG	3 cut(s)	90, 156, 199
VpaK11BI	GGWCC	1 cut(s)	42
XapI	RAATTY	2 cut(s)	320, 364
XcmI	CCANNNNNNNNNTGG	1 cut(s)	90
XmiI	GTMKAC	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.